Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 C 1.50701 * 109.46497 * 119.99685 * 2 1 3 5 5 C 1.33821 * 124.51979 * 120.00312 * 4 2 1 6 6 C 1.37475 * 115.09744 * 179.72692 * 5 4 2 7 7 C 1.36644 * 113.29901 * 0.02562 * 6 5 4 8 8 C 1.46588 * 125.45673 * 179.97438 * 7 6 5 9 9 O 1.21697 * 120.00122 * 352.13349 * 8 7 6 10 10 N 1.34773 * 119.99703 * 172.12886 * 8 7 6 11 11 C 1.46501 * 120.00300 * 1.93268 * 10 8 7 12 12 C 1.50704 * 109.46878 * 82.15486 * 11 10 8 13 13 H 1.07996 * 120.00189 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99814 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99754 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00271 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47128 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47331 * 120.00180 * 16 14 12 19 19 H 1.48504 * 109.47314 * 240.00506 * 16 14 12 20 20 C 1.46504 * 119.99655 * 181.92770 * 10 8 7 21 21 C 1.52995 * 109.46885 * 114.96531 * 20 10 8 22 22 C 1.53007 * 109.46974 * 234.96274 * 20 10 8 23 23 S 1.70613 * 124.52543 * 299.69273 * 4 2 1 24 24 H 1.09000 * 109.47369 * 300.00560 * 1 2 3 25 25 H 1.09001 * 109.46891 * 60.00067 * 1 2 3 26 26 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46885 * 239.99248 * 2 1 3 28 28 H 1.09008 * 109.46947 * 299.99490 * 3 2 1 29 29 H 1.09000 * 109.47279 * 59.99384 * 3 2 1 30 30 H 1.08999 * 109.47182 * 180.02562 * 3 2 1 31 31 H 1.07998 * 122.44898 * 359.70700 * 5 4 2 32 32 H 1.08007 * 123.34735 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.46860 * 202.15207 * 11 10 8 34 34 H 1.08998 * 109.47186 * 322.15912 * 11 10 8 35 35 H 0.96999 * 119.99441 * 179.97438 * 15 14 12 36 36 H 1.08992 * 109.47474 * 354.95995 * 20 10 8 37 37 H 1.09001 * 109.47542 * 60.00073 * 21 20 10 38 38 H 1.09008 * 109.47346 * 179.97438 * 21 20 10 39 39 H 1.08999 * 109.47082 * 300.00002 * 21 20 10 40 40 H 1.09002 * 109.46966 * 60.00489 * 22 20 10 41 41 H 1.08999 * 109.46707 * 180.02562 * 22 20 10 42 42 H 1.09002 * 109.46858 * 300.00170 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.8047 -1.8029 1.2133 6 6 3.1554 -2.2887 2.4506 7 6 2.6427 -1.5563 3.4840 8 6 2.8477 -1.8359 4.9083 9 8 3.4000 -2.8640 5.2533 10 7 2.4247 -0.9542 5.8357 11 6 1.7224 0.2632 5.4225 12 6 0.2688 -0.0529 5.1810 13 1 -0.0955 -1.0598 5.3216 14 6 -0.5963 0.9436 4.7815 15 7 -0.1528 2.1700 4.6108 16 14 -2.3981 0.5521 4.4828 17 1 -2.6412 -0.8896 4.7434 18 1 -3.2398 1.3681 5.3943 19 1 -2.7460 0.8663 3.0737 20 6 2.6672 -1.2134 7.2571 21 6 3.6150 -0.1498 7.8150 22 6 1.3407 -1.1642 8.0180 23 16 1.6979 -0.2247 2.8316 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 3.1287 -2.2691 0.2946 32 1 3.7739 -3.1629 2.5918 33 1 1.8051 1.0146 6.2078 34 1 2.1682 0.6462 4.5046 35 1 -0.7613 2.8709 4.3293 36 1 3.1173 -2.1990 7.3751 37 1 3.1648 0.8359 7.6970 38 1 3.7951 -0.3423 8.8727 39 1 4.5599 -0.1849 7.2728 40 1 0.6655 -1.9220 7.6206 41 1 1.5212 -1.3566 9.0756 42 1 0.8906 -0.1784 7.9000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545518779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = -34.641057 kcal Electronic energy + Delta-G solvation = -22778.504778 eV Core-core repulsion = 19656.143488 eV Total energy + Delta-G solvation = -3122.361290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91136 -38.93542 -37.39300 -35.86398 -35.02906 -33.17478 -29.63219 -29.28253 -28.02036 -27.99366 -25.81562 -25.05602 -23.02287 -21.98633 -20.63852 -19.37760 -18.89167 -18.51379 -17.32818 -16.53614 -16.35041 -16.06172 -15.64026 -15.19246 -14.91374 -14.59589 -14.55263 -14.29995 -14.09862 -13.96608 -13.87847 -13.36384 -13.34215 -12.98996 -12.84811 -12.82121 -12.74428 -12.56896 -12.30197 -12.13680 -12.06721 -12.02126 -11.90265 -11.66618 -11.56919 -10.95684 -10.63375 -10.53959 -9.67903 -9.27280 -9.06807 -8.20535 -6.25465 -0.16467 0.99857 1.37021 1.44867 1.52062 1.53878 1.62180 2.23455 2.37711 2.44912 3.11617 3.77236 3.82267 4.06175 4.14068 4.25117 4.27924 4.40183 4.50550 4.63665 4.66147 4.77010 4.77441 4.80860 4.84983 4.90681 4.96941 4.97188 5.03317 5.10129 5.11638 5.24415 5.35166 5.36298 5.39349 5.46321 5.51260 5.67449 5.72646 5.85549 5.96671 6.48667 6.76880 7.23984 7.37521 8.83736 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.008449 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.225637 B = 3313.031207 C = 4800.652451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.020 4.020 3 C -0.145 4.145 4 C -0.273 4.273 5 C -0.171 4.171 6 C -0.075 4.075 7 C -0.330 4.330 8 C 0.581 3.419 9 O -0.598 6.598 10 N -0.593 5.593 11 C 0.239 3.761 12 C -0.530 4.530 13 H 0.048 0.952 14 C 0.053 3.947 15 N -0.894 5.894 16 Si 0.924 3.076 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.270 1.270 20 C 0.126 3.874 21 C -0.149 4.149 22 C -0.141 4.141 23 S 0.366 5.634 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.272 0.728 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 0.046 -4.970 5.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 C -0.203 4.203 4 C -0.393 4.393 5 C -0.200 4.200 6 C -0.111 4.111 7 C -0.450 4.450 8 C 0.371 3.629 9 O -0.484 6.484 10 N -0.322 5.322 11 C 0.116 3.884 12 C -0.571 4.571 13 H 0.066 0.934 14 C -0.151 4.151 15 N -0.532 5.532 16 Si 0.750 3.250 17 H -0.202 1.202 18 H -0.202 1.202 19 H -0.195 1.195 20 C 0.023 3.977 21 C -0.207 4.207 22 C -0.199 4.199 23 S 0.643 5.357 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.916 0.955 -4.227 4.738 hybrid contribution -0.203 -1.446 -0.633 1.592 sum 1.713 -0.491 -4.860 5.176 Atomic orbital electron populations 1.21941 0.94351 1.02021 1.02232 1.19714 0.95524 0.95715 0.93049 1.21916 1.01369 0.94598 1.02390 1.26059 1.03985 1.02608 1.06641 1.19855 1.03496 0.98621 0.98067 1.20644 0.99685 0.99672 0.91091 1.24765 1.14668 1.08624 0.96980 1.17358 0.77645 0.82724 0.85143 1.90636 1.47651 1.27683 1.82427 1.48225 1.55144 1.22404 1.06444 1.19399 0.91262 0.82419 0.95293 1.21386 0.93479 0.95512 1.46723 0.93373 1.25224 1.00986 0.94544 0.94317 1.69956 1.36691 1.01137 1.45372 0.86004 0.81970 0.78363 0.78672 1.20203 1.20161 1.19522 1.21164 0.97097 1.00050 0.79359 1.22065 0.98144 0.98490 1.01995 1.21964 0.95702 1.02273 0.99965 1.85935 1.40112 1.20387 0.89289 0.94427 0.89815 0.92662 0.88288 0.89946 0.94025 0.92230 0.83178 0.84266 0.93718 0.94724 0.91867 0.90110 0.92502 0.88877 0.93388 0.94417 0.89489 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.09 71.98 0.65 -3.40 16 2 C -0.02 -0.55 3.25 -11.54 -0.04 -0.59 16 3 C -0.14 -3.73 9.08 71.98 0.65 -3.08 16 4 C -0.27 -9.38 4.94 24.68 0.12 -9.26 16 5 C -0.17 -5.72 9.95 21.09 0.21 -5.51 16 6 C -0.08 -2.91 10.02 21.72 0.22 -2.69 16 7 C -0.33 -14.44 6.23 24.08 0.15 -14.29 16 8 C 0.58 27.32 7.56 86.42 0.65 27.98 16 9 O -0.60 -30.05 16.19 -4.34 -0.07 -30.12 16 10 N -0.59 -26.04 2.38 -806.93 -1.92 -27.96 16 11 C 0.24 10.98 3.87 85.63 0.33 11.31 16 12 C -0.53 -25.69 6.15 25.60 0.16 -25.53 16 13 H 0.05 2.51 7.81 -2.91 -0.02 2.48 16 14 C 0.05 2.55 5.01 84.65 0.42 2.98 16 15 N -0.89 -43.77 13.29 21.45 0.28 -43.49 16 16 Si 0.92 39.20 29.54 68.60 2.03 41.22 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.13 4.70 3.22 44.99 0.14 4.84 16 21 C -0.15 -4.59 9.26 71.98 0.67 -3.93 16 22 C -0.14 -4.88 8.69 71.98 0.63 -4.25 16 23 S 0.37 15.16 15.06 -56.49 -0.85 14.31 16 24 H 0.04 1.21 7.91 -2.39 -0.02 1.20 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 2.24 8.07 -2.39 -0.02 2.22 16 28 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.04 1.25 7.89 -2.39 -0.02 1.23 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 33 H 0.04 2.12 6.45 -2.39 -0.02 2.10 16 34 H 0.04 1.70 4.51 -21.16 -0.10 1.60 16 35 H 0.27 12.66 8.31 -92.71 -0.77 11.88 16 36 H 0.08 3.14 6.91 -2.39 -0.02 3.13 16 37 H 0.06 1.82 6.93 -2.39 -0.02 1.80 16 38 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.18 7.10 -2.39 -0.02 2.17 16 Total: -1.00 -56.63 347.22 5.35 -51.28 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.91 Total: 20.18 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.97 Total: -25.43 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.63 Total: -71.44 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.07 Total: -30.12 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 15.16 SS G_CDS: -0.85 Total: 14.31 kcal Total: -56.63 5.35 -51.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545518779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.641 kcal (2) G-P(sol) polarization free energy of solvation -56.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds