Wall clock time and date at job start Tue Mar 31 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47145 * 2 1 4 4 C 1.38368 * 119.84535 * 89.99846 * 3 2 1 5 5 C 1.37953 * 120.14221 * 180.02562 * 4 3 2 6 6 C 1.39598 * 119.85500 * 0.02562 * 5 4 3 7 7 C 1.47789 * 120.15043 * 179.97438 * 6 5 4 8 8 O 1.21563 * 119.99964 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.39012 * 119.99866 * 174.42331 * 9 7 6 11 11 C 1.38681 * 120.28780 * 335.15209 * 10 9 7 12 12 C 1.38203 * 120.02628 * 179.97438 * 11 10 9 13 13 C 1.38878 * 120.62376 * 0.02562 * 12 11 10 14 14 C 1.36451 * 120.58355 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94566 * 359.97438 * 14 13 12 16 16 C 1.41053 * 120.30376 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00084 * 145.07420 * 16 15 14 18 18 C 1.39965 * 119.99774 * 325.07288 * 16 15 14 19 19 N 1.30848 * 120.00227 * 4.80621 * 18 16 15 20 20 Si 1.86804 * 120.00147 * 184.80182 * 18 16 15 21 21 H 1.48497 * 109.46930 * 89.99955 * 20 18 16 22 22 H 1.48500 * 109.47409 * 210.00435 * 20 18 16 23 23 H 1.48501 * 109.46901 * 330.00293 * 20 18 16 24 24 C 1.39604 * 119.70333 * 0.24767 * 6 5 4 25 25 C 1.37948 * 119.85118 * 359.49850 * 24 6 5 26 26 H 1.08996 * 109.47096 * 59.99849 * 1 2 3 27 27 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46898 * 299.99531 * 1 2 3 29 29 H 1.09001 * 109.47619 * 240.00611 * 2 1 3 30 30 H 1.09000 * 109.47554 * 120.00291 * 2 1 3 31 31 H 1.08000 * 119.93312 * 0.05011 * 4 3 2 32 32 H 1.08008 * 120.07009 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99946 * 354.42497 * 9 7 6 34 34 H 1.07994 * 119.98741 * 0.02926 * 11 10 9 35 35 H 1.08010 * 119.68454 * 180.28437 * 12 11 10 36 36 H 1.08003 * 119.70691 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.02530 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00513 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.07306 * 179.72965 * 24 6 5 40 40 H 1.07995 * 119.92752 * 180.25509 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0701 1.2002 5 6 2.7212 3.3709 1.2073 6 6 2.9539 4.0323 0.0002 7 6 3.4455 5.4261 0.0003 8 8 3.6485 5.9989 1.0530 9 7 3.6696 6.0616 -1.1669 10 6 4.0200 7.4069 -1.1696 11 6 3.6593 8.2257 -0.1101 12 6 4.0110 9.5623 -0.1182 13 6 4.7253 10.0995 -1.1811 14 6 5.0931 9.3168 -2.2366 15 6 4.7487 7.9523 -2.2529 16 6 5.1256 7.1361 -3.3399 17 1 5.3919 6.1030 -3.1725 18 6 5.1543 7.6652 -4.6353 19 7 4.9234 8.9388 -4.8272 20 14 5.5224 6.5533 -6.0905 21 1 4.2531 5.9896 -6.6163 22 1 6.1942 7.3391 -7.1566 23 1 6.4125 5.4471 -5.6555 24 6 2.7148 3.3733 -1.2070 25 6 2.2605 2.0708 -1.2000 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0814 1.5573 2.1334 32 1 2.8995 3.8767 2.1448 33 1 3.5865 5.5804 -2.0050 34 1 3.1042 7.8187 0.7220 35 1 3.7312 10.1940 0.7121 36 1 4.9919 11.1460 -1.1723 37 1 5.6488 9.7438 -3.0583 38 1 4.9436 9.3056 -5.7249 39 1 2.8887 3.8808 -2.1444 40 1 2.0791 1.5584 -2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555514558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:18 Heat of formation + Delta-G solvation = -0.567775 kcal Electronic energy + Delta-G solvation = -22394.375425 eV Core-core repulsion = 19138.047712 eV Total energy + Delta-G solvation = -3256.327713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12891 -38.76410 -37.08087 -34.24057 -33.83492 -33.61163 -30.96650 -29.97175 -29.57134 -28.13118 -25.35273 -24.52213 -22.66819 -22.18400 -21.19836 -20.58730 -19.37812 -17.81624 -17.17111 -16.27927 -15.69227 -15.37699 -15.04036 -14.75804 -14.50571 -14.17563 -13.87148 -13.74090 -13.39856 -13.27414 -13.00337 -12.68971 -12.49680 -12.26576 -11.92130 -11.73372 -11.42465 -11.32398 -11.17602 -11.13311 -10.96311 -10.91271 -10.50093 -10.14148 -9.76446 -9.42843 -9.23753 -8.98349 -8.84986 -8.70231 -7.30879 -6.91141 -6.61910 -4.45284 0.92334 1.38692 2.64559 2.88394 3.03088 3.06079 3.17935 3.36452 3.86059 3.89632 4.08451 4.56204 4.65430 4.67310 4.93753 4.98712 5.11946 5.21171 5.33521 5.37118 5.47492 5.61379 5.65323 5.76165 5.86069 5.97375 6.00092 6.29525 6.35387 6.42876 6.50812 6.54126 6.59159 6.87438 6.93828 7.05911 7.18022 7.27562 7.66446 7.70944 7.98973 8.09020 8.11086 8.42037 8.56402 8.81021 8.83735 9.00469 10.21836 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.004372 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.121937 B = 6402.877415 C = 8085.132408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.067 4.067 4 C -0.129 4.129 5 C -0.060 4.060 6 C -0.126 4.126 7 C 0.536 3.464 8 O -0.537 6.537 9 N -0.628 5.628 10 C 0.027 3.973 11 C -0.103 4.103 12 C -0.212 4.212 13 C -0.122 4.122 14 C -0.138 4.138 15 C 0.093 3.907 16 C -0.473 4.473 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.807 5.807 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.085 4.085 25 C -0.125 4.125 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.404 0.596 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.129 0.871 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -14.309 3.638 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.068 4.068 4 C -0.147 4.147 5 C -0.079 4.079 6 C -0.129 4.129 7 C 0.325 3.675 8 O -0.417 6.417 9 N -0.270 5.270 10 C -0.067 4.067 11 C -0.123 4.123 12 C -0.232 4.232 13 C -0.141 4.141 14 C -0.158 4.158 15 C 0.089 3.911 16 C -0.504 4.504 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.434 5.434 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.104 4.104 25 C -0.143 4.143 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.241 0.759 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.978 -13.750 4.160 15.559 hybrid contribution 0.113 -0.562 -1.246 1.372 sum -5.864 -14.312 2.914 15.739 Atomic orbital electron populations 1.21751 0.94594 1.01665 1.02442 1.20583 0.96271 0.92588 1.02952 1.20070 0.97363 0.96102 0.93240 1.20971 1.01295 0.94772 0.97621 1.21259 0.94979 0.93838 0.97857 1.20102 1.03734 0.94720 0.94327 1.18264 0.79263 0.85739 0.84278 1.90689 1.52363 1.67262 1.31364 1.42866 1.65420 1.10376 1.08301 1.17907 1.05677 0.82324 1.00770 1.20796 1.00616 0.93029 0.97899 1.20396 1.08242 0.94857 0.99696 1.20556 1.00401 0.98018 0.95156 1.21180 1.02617 0.94064 0.97901 1.17414 0.89435 0.93247 0.90955 1.19275 1.42114 0.97992 0.91047 0.90803 1.25833 0.92595 0.95278 1.00429 1.69757 1.37303 1.12600 1.23735 0.86257 0.79312 0.80536 0.80270 1.19502 1.20205 1.18694 1.21424 0.96704 0.94749 0.97484 1.20944 1.01005 0.94689 0.97704 0.92411 0.92420 0.92456 0.90897 0.90944 0.85706 0.84715 0.75909 0.86511 0.89089 0.89268 0.85064 0.91029 0.85274 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.07 -0.72 5.14 -104.53 -0.54 -1.26 16 4 C -0.13 -1.48 9.68 -39.64 -0.38 -1.86 16 5 C -0.06 -0.86 9.60 -39.18 -0.38 -1.24 16 6 C -0.13 -2.03 5.87 -104.97 -0.62 -2.64 16 7 C 0.54 10.84 7.57 -12.35 -0.09 10.75 16 8 O -0.54 -12.35 13.51 5.31 0.07 -12.28 16 9 N -0.63 -13.32 5.06 -10.35 -0.05 -13.37 16 10 C 0.03 0.67 6.46 -83.20 -0.54 0.13 16 11 C -0.10 -2.54 8.71 -39.43 -0.34 -2.88 16 12 C -0.21 -5.01 10.04 -39.36 -0.39 -5.40 16 13 C -0.12 -2.93 9.96 -39.99 -0.40 -3.33 16 14 C -0.14 -3.57 8.62 -39.28 -0.34 -3.90 16 15 C 0.09 2.43 5.56 -106.65 -0.59 1.83 16 16 C -0.47 -11.89 8.17 -37.87 -0.31 -12.20 16 17 H 0.07 1.76 7.46 -52.49 -0.39 1.37 16 18 C 0.07 1.80 5.42 -17.32 -0.09 1.70 16 19 N -0.81 -20.25 10.60 55.55 0.59 -19.66 16 20 Si 0.91 17.98 29.56 -169.99 -5.03 12.96 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.08 -1.17 9.54 -39.18 -0.37 -1.54 16 25 C -0.13 -1.44 9.68 -39.64 -0.38 -1.82 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.93 7.65 -52.48 -0.40 1.53 16 33 H 0.40 7.71 5.77 -40.82 -0.24 7.47 16 34 H 0.12 2.85 5.79 -52.49 -0.30 2.54 16 35 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.13 3.49 6.14 -52.48 -0.32 3.17 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.13 1.66 6.42 -52.49 -0.34 1.32 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -29.21 336.38 -9.85 -39.06 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -4.93 Total: 13.44 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -5.58 Total: -25.22 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.54 Total: -33.03 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.21 -9.85 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555514558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.493 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds