Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47145 * 2 1 4 4 C 1.38368 * 119.84535 * 89.99846 * 3 2 1 5 5 C 1.37953 * 120.14221 * 180.02562 * 4 3 2 6 6 C 1.39598 * 119.85500 * 0.02562 * 5 4 3 7 7 C 1.47789 * 120.15043 * 179.97438 * 6 5 4 8 8 O 1.21563 * 119.99964 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00241 * 179.97438 * 7 6 5 10 10 C 1.39012 * 119.99866 * 174.42331 * 9 7 6 11 11 C 1.38681 * 120.28780 * 335.15209 * 10 9 7 12 12 C 1.38203 * 120.02628 * 179.97438 * 11 10 9 13 13 C 1.38878 * 120.62376 * 0.02562 * 12 11 10 14 14 C 1.36451 * 120.58355 * 359.97438 * 13 12 11 15 15 C 1.40735 * 119.94566 * 359.97438 * 14 13 12 16 16 C 1.41053 * 120.30376 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00084 * 145.07420 * 16 15 14 18 18 C 1.39965 * 119.99774 * 325.07288 * 16 15 14 19 19 N 1.30848 * 120.00227 * 4.80621 * 18 16 15 20 20 Si 1.86804 * 120.00147 * 184.80182 * 18 16 15 21 21 H 1.48497 * 109.46930 * 89.99955 * 20 18 16 22 22 H 1.48500 * 109.47409 * 210.00435 * 20 18 16 23 23 H 1.48501 * 109.46901 * 330.00293 * 20 18 16 24 24 C 1.39604 * 119.70333 * 0.24767 * 6 5 4 25 25 C 1.37948 * 119.85118 * 359.49850 * 24 6 5 26 26 H 1.08996 * 109.47096 * 59.99849 * 1 2 3 27 27 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46898 * 299.99531 * 1 2 3 29 29 H 1.09001 * 109.47619 * 240.00611 * 2 1 3 30 30 H 1.09000 * 109.47554 * 120.00291 * 2 1 3 31 31 H 1.08000 * 119.93312 * 0.05011 * 4 3 2 32 32 H 1.08008 * 120.07009 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99946 * 354.42497 * 9 7 6 34 34 H 1.07994 * 119.98741 * 0.02926 * 11 10 9 35 35 H 1.08010 * 119.68454 * 180.28437 * 12 11 10 36 36 H 1.08003 * 119.70691 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.02530 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00513 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.07306 * 179.72965 * 24 6 5 40 40 H 1.07995 * 119.92752 * 180.25509 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0701 1.2002 5 6 2.7212 3.3709 1.2073 6 6 2.9539 4.0323 0.0002 7 6 3.4455 5.4261 0.0003 8 8 3.6485 5.9989 1.0530 9 7 3.6696 6.0616 -1.1669 10 6 4.0200 7.4069 -1.1696 11 6 3.6593 8.2257 -0.1101 12 6 4.0110 9.5623 -0.1182 13 6 4.7253 10.0995 -1.1811 14 6 5.0931 9.3168 -2.2366 15 6 4.7487 7.9523 -2.2529 16 6 5.1256 7.1361 -3.3399 17 1 5.3919 6.1030 -3.1725 18 6 5.1543 7.6652 -4.6353 19 7 4.9234 8.9388 -4.8272 20 14 5.5224 6.5533 -6.0905 21 1 4.2531 5.9896 -6.6163 22 1 6.1942 7.3391 -7.1566 23 1 6.4125 5.4471 -5.6555 24 6 2.7148 3.3733 -1.2070 25 6 2.2605 2.0708 -1.2000 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0814 1.5573 2.1334 32 1 2.8995 3.8767 2.1448 33 1 3.5865 5.5804 -2.0050 34 1 3.1042 7.8187 0.7220 35 1 3.7312 10.1940 0.7121 36 1 4.9919 11.1460 -1.1723 37 1 5.6488 9.7438 -3.0583 38 1 4.9436 9.3056 -5.7249 39 1 2.8887 3.8808 -2.1444 40 1 2.0791 1.5584 -2.1332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555514558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = -14.480139 kcal Electronic energy + Delta-G solvation = -22394.978710 eV Core-core repulsion = 19138.047712 eV Total energy + Delta-G solvation = -3256.930998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58363 -40.04491 -38.81064 -35.65761 -35.50185 -34.96776 -32.01111 -31.49573 -31.10013 -29.69375 -27.16523 -25.60493 -23.79440 -23.47604 -22.79174 -22.01105 -20.89287 -19.43475 -18.90425 -17.91804 -17.11256 -16.51569 -16.32010 -16.13948 -15.93046 -15.89094 -15.02575 -14.79503 -14.56347 -14.44375 -14.36756 -14.21930 -13.96216 -13.70903 -13.35808 -13.05491 -12.83940 -12.80657 -12.63726 -12.20054 -12.15467 -12.05178 -11.86848 -11.67173 -11.59158 -11.18732 -11.05246 -10.58800 -9.97342 -9.74772 -9.25765 -8.76753 -8.45306 -6.37717 -0.20887 0.40133 0.88068 1.06459 1.41904 1.51934 1.54612 1.93919 2.23292 2.32603 2.78881 2.87384 3.65139 3.68762 3.81526 3.92260 4.01029 4.28640 4.40980 4.49413 4.55145 4.57102 4.61811 4.65436 4.73967 4.94302 5.01437 5.06155 5.13152 5.14563 5.18186 5.29120 5.34074 5.40400 5.43040 5.44388 5.61919 5.77338 5.83083 5.94164 6.12135 6.15898 6.23700 6.62627 6.71443 6.94137 6.98408 7.29277 8.41559 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.004372 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.121937 B = 6402.877415 C = 8085.132408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.055 4.055 4 C -0.125 4.125 5 C -0.070 4.070 6 C -0.155 4.155 7 C 0.536 3.464 8 O -0.573 6.573 9 N -0.630 5.630 10 C 0.020 3.980 11 C -0.120 4.120 12 C -0.215 4.215 13 C -0.126 4.126 14 C -0.161 4.161 15 C 0.065 3.935 16 C -0.495 4.495 17 H 0.078 0.922 18 C 0.034 3.966 19 N -0.837 5.837 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.089 4.089 25 C -0.124 4.124 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.412 0.588 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.285 0.715 39 H 0.132 0.868 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -17.321 2.915 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.055 4.055 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.158 4.158 7 C 0.327 3.673 8 O -0.455 6.455 9 N -0.272 5.272 10 C -0.075 4.075 11 C -0.140 4.140 12 C -0.234 4.234 13 C -0.145 4.145 14 C -0.181 4.181 15 C 0.061 3.939 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.464 5.464 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.108 4.108 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.171 0.829 32 H 0.143 0.857 33 H 0.250 0.750 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.810 -16.776 3.442 18.430 hybrid contribution 0.312 0.299 -0.942 1.036 sum -6.498 -16.476 2.501 17.887 Atomic orbital electron populations 1.21753 0.93994 1.02683 1.01998 1.20678 0.96580 0.90457 1.04499 1.20515 0.95011 0.97449 0.92519 1.21270 1.00076 0.93497 0.99411 1.21319 0.95691 0.95129 0.96813 1.19855 1.06954 0.92739 0.96245 1.18956 0.77933 0.87212 0.83239 1.90644 1.53884 1.68606 1.32381 1.42865 1.65695 1.09367 1.09249 1.18086 1.05110 0.83935 1.00364 1.20968 1.01269 0.93751 0.98015 1.20709 1.07577 0.94852 1.00311 1.20798 0.99959 0.99151 0.94548 1.21217 1.03767 0.94691 0.98462 1.17758 0.90327 0.93834 0.91958 1.19490 1.43083 0.98224 0.91715 0.90377 1.26727 0.91743 0.96645 1.02828 1.69838 1.37512 1.14280 1.24783 0.85134 0.79435 0.78431 0.76317 1.18392 1.19767 1.18187 1.21524 0.96816 0.95819 0.96603 1.21284 0.99833 0.93640 0.99406 0.92923 0.90737 0.92907 0.89439 0.89444 0.82872 0.85707 0.74984 0.86774 0.86493 0.86734 0.86336 0.90410 0.85032 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.09 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.05 -0.99 5.14 -19.80 -0.10 -1.10 16 4 C -0.12 -2.57 9.68 22.23 0.22 -2.36 16 5 C -0.07 -1.99 9.60 22.53 0.22 -1.77 16 6 C -0.15 -5.05 5.87 -20.09 -0.12 -5.16 16 7 C 0.54 22.50 7.57 86.77 0.66 23.15 16 8 O -0.57 -27.57 13.51 -3.91 -0.05 -27.62 16 9 N -0.63 -27.68 5.06 -304.92 -1.54 -29.23 16 10 C 0.02 1.02 6.46 38.91 0.25 1.27 16 11 C -0.12 -6.08 8.71 22.37 0.19 -5.88 16 12 C -0.21 -10.26 10.04 22.41 0.22 -10.03 16 13 C -0.13 -6.11 9.96 22.01 0.22 -5.89 16 14 C -0.16 -8.64 8.62 22.46 0.19 -8.44 16 15 C 0.06 3.50 5.56 -21.18 -0.12 3.38 16 16 C -0.49 -25.41 8.17 23.38 0.19 -25.22 16 17 H 0.08 3.80 7.46 -2.91 -0.02 3.78 16 18 C 0.03 1.63 5.42 85.26 0.46 2.09 16 19 N -0.84 -42.68 10.60 21.83 0.23 -42.45 16 20 Si 0.99 36.46 29.56 68.60 2.03 38.49 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 24 C -0.09 -2.36 9.54 22.53 0.21 -2.15 16 25 C -0.12 -2.50 9.68 22.23 0.22 -2.29 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.12 3.68 7.65 -2.91 -0.02 3.66 16 33 H 0.41 16.23 5.77 -92.71 -0.54 15.70 16 34 H 0.11 5.79 5.79 -2.91 -0.02 5.77 16 35 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 37 H 0.12 6.56 6.14 -2.91 -0.02 6.54 16 38 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 39 H 0.13 3.32 6.42 -2.91 -0.02 3.31 16 40 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.29 336.38 5.00 -60.29 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: 0.53 Total: 42.58 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.81 Total: -42.07 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.31 Total: -71.67 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -65.29 5.00 -60.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555514558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.809 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds