Wall clock time and date at job start Tue Mar 31 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52993 * 109.47305 * 120.00267 * 2 1 3 5 5 H 1.08999 * 109.47390 * 184.18950 * 4 2 1 6 6 O 1.42908 * 109.46992 * 304.18863 * 4 2 1 7 7 C 1.50700 * 109.47318 * 64.18589 * 4 2 1 8 8 O 1.21298 * 119.99961 * 252.52858 * 7 4 2 9 9 N 1.34776 * 119.99885 * 72.52960 * 7 4 2 10 10 C 1.46494 * 120.00256 * 4.98375 * 9 7 4 11 11 C 1.50694 * 109.47508 * 264.06297 * 10 9 7 12 12 H 1.07996 * 120.00047 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00044 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99966 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47488 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47063 * 120.00494 * 15 13 11 18 18 H 1.48503 * 109.47305 * 240.00227 * 15 13 11 19 19 C 1.40036 * 119.99571 * 184.98876 * 9 7 4 20 20 C 1.38849 * 120.04758 * 353.16297 * 19 9 7 21 21 C 1.38108 * 119.95265 * 180.25314 * 20 19 9 22 22 C 1.38476 * 120.04481 * 359.47155 * 21 20 19 23 23 F 1.35105 * 119.95728 * 180.22898 * 22 21 20 24 24 C 1.38478 * 120.09144 * 0.51278 * 22 21 20 25 25 C 1.38109 * 120.04197 * 359.76197 * 24 22 21 26 26 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47117 * 299.99501 * 1 2 3 28 28 H 1.08992 * 109.47323 * 59.99839 * 1 2 3 29 29 H 1.09003 * 109.46920 * 239.99986 * 2 1 3 30 30 H 1.09003 * 109.46572 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47663 * 300.00021 * 3 2 1 32 32 H 1.08993 * 109.47316 * 60.00334 * 3 2 1 33 33 H 0.96694 * 113.99930 * 60.00129 * 6 4 2 34 34 H 1.09008 * 109.46789 * 24.06093 * 10 9 7 35 35 H 1.08996 * 109.47257 * 144.05681 * 10 9 7 36 36 H 0.97002 * 119.99803 * 179.97438 * 14 13 11 37 37 H 1.07997 * 120.02115 * 359.97438 * 20 19 9 38 38 H 1.08006 * 119.97939 * 179.72455 * 21 20 19 39 39 H 1.07995 * 119.97944 * 179.74482 * 24 22 21 40 40 H 1.07994 * 120.02221 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1275 -0.6567 1.2875 6 8 1.4851 -0.1069 2.4139 7 6 1.6242 -2.1689 1.1984 8 8 0.7488 -2.5745 1.9334 9 7 2.2251 -3.0128 0.3363 10 6 3.3553 -2.5508 -0.4734 11 6 2.8592 -2.1223 -1.8303 12 1 1.8074 -2.1879 -2.0662 13 6 3.7483 -1.6464 -2.7706 14 7 5.0292 -1.5670 -2.4836 15 14 3.1334 -1.1159 -4.4529 16 1 1.6619 -1.3031 -4.5239 17 1 3.4609 0.3161 -4.6706 18 1 3.7886 -1.9385 -5.5014 19 6 1.7691 -4.3312 0.2144 20 6 0.7945 -4.8123 1.0784 21 6 0.3499 -6.1145 0.9599 22 6 0.8675 -6.9367 -0.0268 23 9 0.4280 -8.2089 -0.1442 24 6 1.8393 -6.4587 -0.8898 25 6 2.2907 -5.1589 -0.7709 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 0.5189 -0.1276 2.4470 34 1 3.8354 -1.7064 0.0213 35 1 4.0748 -3.3613 -0.5889 36 1 5.6547 -1.2326 -3.1453 37 1 0.3876 -4.1701 1.8455 38 1 -0.4050 -6.4906 1.6345 39 1 2.2448 -7.1028 -1.6560 40 1 3.0489 -4.7865 -1.4438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556836679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:57 Heat of formation + Delta-G solvation = -101.185233 kcal Electronic energy + Delta-G solvation = -24895.422920 eV Core-core repulsion = 21203.962881 eV Total energy + Delta-G solvation = -3691.460038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.46682 -40.63336 -38.35774 -36.63025 -35.51855 -33.32912 -32.85104 -30.67590 -29.57169 -27.65959 -26.87500 -26.47113 -23.63921 -22.49272 -21.94677 -20.28209 -19.29611 -17.41500 -17.21914 -16.99619 -16.61783 -15.99448 -15.43985 -15.18676 -15.11058 -14.66392 -14.49742 -14.01628 -13.70706 -13.23457 -13.08486 -12.79804 -12.60506 -12.49480 -12.31733 -12.02363 -11.95046 -11.79852 -11.61444 -11.28538 -11.20784 -10.95629 -10.85595 -10.60855 -10.46707 -10.33803 -10.11270 -9.80661 -9.24961 -8.83213 -8.65853 -8.62476 -7.29998 -6.42395 -4.50405 1.53036 1.70823 2.95786 3.08511 3.19204 3.22150 3.44198 4.12248 4.18875 4.63942 4.74699 4.83908 4.91844 5.16143 5.24560 5.26827 5.31317 5.56497 5.76496 5.78485 5.87878 5.94940 6.00754 6.11570 6.17869 6.24919 6.32929 6.47299 6.54442 6.63439 6.65378 6.70367 6.75895 6.90508 6.99527 7.10040 7.49327 7.58268 7.71401 7.78745 7.92878 8.47811 8.60255 9.15948 10.63209 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007037 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.343744 B = 3977.803886 C = 5667.020661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C -0.133 4.133 4 C 0.106 3.894 5 H 0.126 0.874 6 O -0.545 6.545 7 C 0.493 3.507 8 O -0.540 6.540 9 N -0.529 5.529 10 C 0.223 3.777 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.073 3.927 14 N -0.880 5.880 15 Si 0.894 3.106 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.160 3.840 20 C -0.155 4.155 21 C -0.139 4.139 22 C 0.051 3.949 23 F -0.153 7.153 24 C -0.135 4.135 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.376 0.624 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.269 0.731 37 H 0.188 0.812 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -0.416 3.453 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.191 4.191 4 C 0.044 3.956 5 H 0.143 0.857 6 O -0.350 6.350 7 C 0.284 3.716 8 O -0.421 6.421 9 N -0.249 5.249 10 C 0.104 3.896 11 C -0.581 4.581 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.516 5.516 15 Si 0.720 3.280 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.064 3.936 20 C -0.174 4.174 21 C -0.158 4.158 22 C 0.031 3.969 23 F -0.132 7.132 24 C -0.155 4.155 25 C -0.135 4.135 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.225 0.775 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.204 0.796 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.514 -0.389 3.900 5.978 hybrid contribution -0.726 -0.175 -1.381 1.570 sum -5.240 -0.564 2.520 5.842 Atomic orbital electron populations 1.21819 0.95778 1.01662 1.01360 1.22268 0.95867 0.97953 1.00681 1.21652 1.01306 0.95169 1.00928 1.21900 0.99994 0.86948 0.86776 0.85670 1.86543 1.26243 1.79503 1.42738 1.21787 0.81360 0.89558 0.78936 1.90231 1.32678 1.76704 1.42486 1.46081 1.32673 1.08113 1.38029 1.19828 0.82719 0.96713 0.90294 1.21302 0.94892 1.44603 0.97291 0.91308 1.24908 0.94635 0.94872 0.98792 1.69911 1.01839 1.44420 1.35465 0.86488 0.79413 0.78593 0.83468 1.19385 1.20528 1.20611 1.18125 0.95298 0.84795 0.95380 1.22699 0.97416 0.95663 1.01609 1.21052 1.01876 0.94294 0.98600 1.17741 0.99486 0.79709 0.99924 1.91425 1.88827 1.37075 1.95837 1.20874 0.98003 0.96552 1.00064 1.21041 1.01837 0.92331 0.98244 0.92839 0.93233 0.92281 0.84163 0.92403 0.92948 0.93052 0.77525 0.93200 0.93495 0.92117 0.79631 0.85446 0.85121 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.60 37.16 0.32 -1.91 16 2 C -0.15 -2.47 2.66 -90.62 -0.24 -2.71 16 3 C -0.13 -1.99 9.08 37.16 0.34 -1.66 16 4 C 0.11 1.81 2.35 -27.89 -0.07 1.74 16 5 H 0.13 2.19 6.55 -51.93 -0.34 1.85 16 6 O -0.54 -8.82 12.47 -54.82 -0.68 -9.51 16 7 C 0.49 9.34 5.88 -10.99 -0.06 9.28 16 8 O -0.54 -10.63 12.71 -14.05 -0.18 -10.81 16 9 N -0.53 -10.41 2.69 -114.72 -0.31 -10.72 16 10 C 0.22 4.69 4.11 -5.20 -0.02 4.67 16 11 C -0.54 -12.20 5.92 -34.44 -0.20 -12.40 16 12 H 0.07 1.61 7.62 -52.49 -0.40 1.21 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.88 -21.64 13.29 55.43 0.74 -20.90 16 15 Si 0.89 18.72 29.54 -169.99 -5.02 13.70 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 19 C 0.16 3.10 6.47 -83.65 -0.54 2.56 16 20 C -0.15 -2.82 9.05 -39.40 -0.36 -3.18 16 21 C -0.14 -2.29 10.02 -39.54 -0.40 -2.69 16 22 C 0.05 0.86 7.30 -39.41 -0.29 0.57 16 23 F -0.15 -2.49 17.27 2.25 0.04 -2.45 16 24 C -0.14 -2.25 10.02 -39.54 -0.40 -2.64 16 25 C -0.11 -2.10 9.02 -39.40 -0.36 -2.45 16 26 H 0.05 0.88 7.35 -51.93 -0.38 0.49 16 27 H 0.05 0.64 6.72 -51.93 -0.35 0.29 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.14 2.71 4.17 -51.93 -0.22 2.50 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.71 7.80 -51.93 -0.40 0.30 16 33 H 0.38 5.31 6.87 45.56 0.31 5.62 16 34 H 0.05 1.07 5.93 -51.92 -0.31 0.76 16 35 H 0.05 1.04 6.87 -51.93 -0.36 0.69 16 36 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 37 H 0.19 3.53 4.53 -56.22 -0.25 3.28 16 38 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.15 2.89 6.13 -52.49 -0.32 2.57 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -24.52 324.60 -7.16 -31.69 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.27 Total: 13.31 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.37 Total: -9.20 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.43 Total: -31.62 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.86 Total: -20.31 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.52 -7.16 -31.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556836679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.498 kcal (2) G-P(sol) polarization free energy of solvation -24.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds