Wall clock time and date at job start Tue Mar 31 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52993 * 109.47305 * 120.00267 * 2 1 3 5 5 H 1.08999 * 109.47390 * 184.18950 * 4 2 1 6 6 O 1.42908 * 109.46992 * 304.18863 * 4 2 1 7 7 C 1.50700 * 109.47318 * 64.18589 * 4 2 1 8 8 O 1.21298 * 119.99961 * 252.52858 * 7 4 2 9 9 N 1.34776 * 119.99885 * 72.52960 * 7 4 2 10 10 C 1.46494 * 120.00256 * 4.98375 * 9 7 4 11 11 C 1.50694 * 109.47508 * 264.06297 * 10 9 7 12 12 H 1.07996 * 120.00047 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00044 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99966 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47488 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47063 * 120.00494 * 15 13 11 18 18 H 1.48503 * 109.47305 * 240.00227 * 15 13 11 19 19 C 1.40036 * 119.99571 * 184.98876 * 9 7 4 20 20 C 1.38849 * 120.04758 * 353.16297 * 19 9 7 21 21 C 1.38108 * 119.95265 * 180.25314 * 20 19 9 22 22 C 1.38476 * 120.04481 * 359.47155 * 21 20 19 23 23 F 1.35105 * 119.95728 * 180.22898 * 22 21 20 24 24 C 1.38478 * 120.09144 * 0.51278 * 22 21 20 25 25 C 1.38109 * 120.04197 * 359.76197 * 24 22 21 26 26 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47117 * 299.99501 * 1 2 3 28 28 H 1.08992 * 109.47323 * 59.99839 * 1 2 3 29 29 H 1.09003 * 109.46920 * 239.99986 * 2 1 3 30 30 H 1.09003 * 109.46572 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47663 * 300.00021 * 3 2 1 32 32 H 1.08993 * 109.47316 * 60.00334 * 3 2 1 33 33 H 0.96694 * 113.99930 * 60.00129 * 6 4 2 34 34 H 1.09008 * 109.46789 * 24.06093 * 10 9 7 35 35 H 1.08996 * 109.47257 * 144.05681 * 10 9 7 36 36 H 0.97002 * 119.99803 * 179.97438 * 14 13 11 37 37 H 1.07997 * 120.02115 * 359.97438 * 20 19 9 38 38 H 1.08006 * 119.97939 * 179.72455 * 21 20 19 39 39 H 1.07995 * 119.97944 * 179.74482 * 24 22 21 40 40 H 1.07994 * 120.02221 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1275 -0.6567 1.2875 6 8 1.4851 -0.1069 2.4139 7 6 1.6242 -2.1689 1.1984 8 8 0.7488 -2.5745 1.9334 9 7 2.2251 -3.0128 0.3363 10 6 3.3553 -2.5508 -0.4734 11 6 2.8592 -2.1223 -1.8303 12 1 1.8074 -2.1879 -2.0662 13 6 3.7483 -1.6464 -2.7706 14 7 5.0292 -1.5670 -2.4836 15 14 3.1334 -1.1159 -4.4529 16 1 1.6619 -1.3031 -4.5239 17 1 3.4609 0.3161 -4.6706 18 1 3.7886 -1.9385 -5.5014 19 6 1.7691 -4.3312 0.2144 20 6 0.7945 -4.8123 1.0784 21 6 0.3499 -6.1145 0.9599 22 6 0.8675 -6.9367 -0.0268 23 9 0.4280 -8.2089 -0.1442 24 6 1.8393 -6.4587 -0.8898 25 6 2.2907 -5.1589 -0.7709 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 0.5189 -0.1276 2.4470 34 1 3.8354 -1.7064 0.0213 35 1 4.0748 -3.3613 -0.5889 36 1 5.6547 -1.2326 -3.1453 37 1 0.3876 -4.1701 1.8455 38 1 -0.4050 -6.4906 1.6345 39 1 2.2448 -7.1028 -1.6560 40 1 3.0489 -4.7865 -1.4438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556836679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:57 Heat of formation + Delta-G solvation = -113.041697 kcal Electronic energy + Delta-G solvation = -24895.937054 eV Core-core repulsion = 21203.962881 eV Total energy + Delta-G solvation = -3691.974173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.79030 -42.11113 -39.74148 -38.02190 -37.07755 -34.65624 -34.57842 -32.07099 -31.01128 -29.34109 -28.09545 -27.85037 -25.31831 -23.93362 -23.36678 -21.64698 -20.71359 -18.85187 -18.80045 -18.48926 -18.19366 -17.36818 -16.82299 -16.57765 -16.51730 -16.25623 -15.99363 -15.42037 -15.11764 -14.61906 -14.52294 -14.28087 -14.08955 -13.82936 -13.79576 -13.45488 -13.36666 -13.15707 -12.91929 -12.86939 -12.68671 -12.56205 -12.25806 -12.14851 -11.92955 -11.82923 -11.54459 -11.18999 -10.83827 -10.61126 -10.11096 -10.03682 -8.79608 -8.21831 -6.33659 0.11660 0.32341 1.40848 1.45116 1.50057 1.55806 1.94333 2.40054 2.75561 3.07345 3.29313 3.39887 3.42390 3.85267 3.91705 3.96675 4.00192 4.29996 4.34702 4.38424 4.47956 4.61004 4.75777 4.87020 4.89882 4.97973 5.01131 5.04997 5.09726 5.24704 5.26082 5.29708 5.34556 5.44253 5.62298 5.63705 5.70352 5.94825 6.12539 6.33972 6.57732 6.73682 7.03627 7.34197 8.82802 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007037 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.343744 B = 3977.803886 C = 5667.020661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C -0.128 4.128 4 C 0.113 3.887 5 H 0.119 0.881 6 O -0.544 6.544 7 C 0.489 3.511 8 O -0.548 6.548 9 N -0.533 5.533 10 C 0.238 3.762 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.038 3.962 14 N -0.909 5.909 15 Si 0.943 3.057 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.283 1.283 19 C 0.137 3.863 20 C -0.162 4.162 21 C -0.130 4.130 22 C 0.052 3.948 23 F -0.147 7.147 24 C -0.128 4.128 25 C -0.125 4.125 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.386 0.614 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.269 0.731 37 H 0.181 0.819 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -0.438 3.492 7.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.186 4.186 4 C 0.051 3.949 5 H 0.136 0.864 6 O -0.351 6.351 7 C 0.280 3.720 8 O -0.430 6.430 9 N -0.253 5.253 10 C 0.118 3.882 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.165 4.165 14 N -0.547 5.547 15 Si 0.769 3.231 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.209 1.209 19 C 0.042 3.958 20 C -0.181 4.181 21 C -0.150 4.150 22 C 0.032 3.968 23 F -0.126 7.126 24 C -0.148 4.148 25 C -0.145 4.145 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.198 0.802 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.730 -0.418 3.946 6.970 hybrid contribution -0.408 -0.246 -1.337 1.419 sum -6.138 -0.664 2.609 6.703 Atomic orbital electron populations 1.21777 0.94404 1.00907 1.02992 1.22156 0.97035 0.98483 0.98902 1.21613 1.00645 0.94178 1.02114 1.21793 0.99674 0.85957 0.87499 0.86374 1.86529 1.27241 1.79116 1.42198 1.22137 0.81150 0.90158 0.78532 1.90224 1.33012 1.77050 1.42706 1.46024 1.32499 1.08653 1.38140 1.19517 0.82881 0.95801 0.89988 1.21290 0.94169 1.43605 0.97748 0.92342 1.25418 0.94695 0.95171 1.01166 1.69982 1.02616 1.45758 1.36324 0.85723 0.78701 0.78210 0.80469 1.19469 1.20225 1.20896 1.18405 0.96245 0.84827 0.96350 1.22645 0.97529 0.96457 1.01501 1.21285 1.01714 0.93385 0.98572 1.17780 0.99301 0.79916 0.99803 1.91445 1.88712 1.36638 1.95787 1.21080 0.97437 0.95967 1.00272 1.20972 1.02096 0.93189 0.98263 0.94714 0.90968 0.91304 0.86940 0.93429 0.92025 0.91551 0.76354 0.93688 0.95019 0.92129 0.80242 0.82815 0.82802 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.60 71.98 0.62 -3.46 16 2 C -0.15 -4.75 2.66 -10.80 -0.03 -4.78 16 3 C -0.13 -3.65 9.08 71.98 0.65 -3.00 16 4 C 0.11 3.82 2.35 29.85 0.07 3.89 16 5 H 0.12 4.17 6.55 -2.39 -0.02 4.16 16 6 O -0.54 -16.85 12.47 -130.25 -1.62 -18.48 16 7 C 0.49 18.54 5.88 87.66 0.52 19.06 16 8 O -0.55 -21.38 12.71 15.65 0.20 -21.18 16 9 N -0.53 -21.29 2.69 -635.24 -1.71 -23.00 16 10 C 0.24 10.24 4.11 85.63 0.35 10.59 16 11 C -0.53 -24.13 5.92 25.60 0.15 -23.98 16 12 H 0.06 2.76 7.62 -2.91 -0.02 2.74 16 13 C 0.04 1.78 5.46 84.66 0.46 2.24 16 14 N -0.91 -45.18 13.29 21.45 0.28 -44.90 16 15 Si 0.94 38.30 29.54 68.60 2.03 40.33 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 19 C 0.14 5.33 6.47 38.12 0.25 5.57 16 20 C -0.16 -5.80 9.05 22.39 0.20 -5.60 16 21 C -0.13 -4.05 10.02 22.30 0.22 -3.83 16 22 C 0.05 1.63 7.30 22.38 0.16 1.79 16 23 F -0.15 -4.41 17.27 44.97 0.78 -3.63 16 24 C -0.13 -4.07 10.02 22.30 0.22 -3.85 16 25 C -0.12 -4.57 9.02 22.39 0.20 -4.37 16 26 H 0.03 1.10 7.35 -2.39 -0.02 1.08 16 27 H 0.07 1.70 6.72 -2.38 -0.02 1.68 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 4.35 4.17 -2.39 -0.01 4.34 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 33 H 0.39 10.17 6.87 -74.06 -0.51 9.67 16 34 H 0.05 1.98 5.93 -2.38 -0.01 1.97 16 35 H 0.03 1.46 6.87 -2.39 -0.02 1.45 16 36 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 37 H 0.18 6.73 4.53 -62.00 -0.28 6.45 16 38 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.14 5.40 6.13 -2.91 -0.02 5.38 16 Total: -1.00 -50.92 324.60 4.31 -46.61 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.31 Total: 33.98 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.06 Total: -9.72 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.43 Total: -67.90 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.43 Total: -39.66 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -50.92 4.31 -46.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556836679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.436 kcal (2) G-P(sol) polarization free energy of solvation -50.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds