Wall clock time and date at job start Tue Mar 31 2020 08:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46927 * 2 1 4 4 H 1.09002 * 109.46823 * 304.67962 * 3 2 1 5 5 O 1.42900 * 109.46851 * 64.67804 * 3 2 1 6 6 C 1.42897 * 113.99887 * 209.99841 * 5 3 2 7 7 C 1.50694 * 109.47022 * 184.68263 * 3 2 1 8 8 O 1.21294 * 119.99557 * 252.66911 * 7 3 2 9 9 N 1.34772 * 120.00581 * 72.66753 * 7 3 2 10 10 C 1.46506 * 119.99610 * 4.99443 * 9 7 3 11 11 C 1.50698 * 109.46823 * 264.13673 * 10 9 7 12 12 H 1.08008 * 120.00114 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00126 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99810 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00232 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46890 * 60.00459 * 15 13 11 17 17 H 1.48502 * 109.46881 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47028 * 300.00161 * 15 13 11 19 19 C 1.40026 * 120.00583 * 184.98973 * 9 7 3 20 20 C 1.38856 * 120.04474 * 353.19042 * 19 9 7 21 21 C 1.38107 * 119.95743 * 180.25790 * 20 19 9 22 22 C 1.38480 * 120.04124 * 359.46271 * 21 20 19 23 23 F 1.35104 * 119.95079 * 180.23761 * 22 21 20 24 24 C 1.38466 * 120.08940 * 0.51346 * 22 21 20 25 25 C 1.38110 * 120.04985 * 359.76935 * 24 22 21 26 26 H 1.08994 * 109.47381 * 299.99866 * 1 2 3 27 27 H 1.08999 * 109.47068 * 60.00100 * 1 2 3 28 28 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47422 * 240.00213 * 2 1 3 30 30 H 1.08999 * 109.47068 * 119.99900 * 2 1 3 31 31 H 1.09001 * 109.47219 * 300.00208 * 6 5 3 32 32 H 1.08994 * 109.47132 * 60.00452 * 6 5 3 33 33 H 1.09000 * 109.47320 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47298 * 24.13322 * 10 9 7 35 35 H 1.08997 * 109.47128 * 144.13768 * 10 9 7 36 36 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.01753 * 359.97405 * 20 19 9 38 38 H 1.08000 * 119.98131 * 179.72257 * 21 20 19 39 39 H 1.08007 * 119.97652 * 179.74585 * 24 22 21 40 40 H 1.07997 * 120.02763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6098 1.9800 -0.8451 5 8 1.6554 2.0837 1.2178 6 6 1.4500 3.4923 1.0934 7 6 3.5425 1.4442 -0.1160 8 8 4.2246 1.7304 0.8453 9 7 4.1283 1.1276 -1.2877 10 6 3.3063 0.8889 -2.4767 11 6 3.0645 -0.5905 -2.6314 12 1 3.4818 -1.2836 -1.9158 13 6 2.3106 -1.0592 -3.6863 14 7 1.8029 -0.2153 -4.5579 15 14 2.0114 -2.8931 -3.8784 16 1 1.3066 -3.4082 -2.6771 17 1 1.1781 -3.1351 -5.0836 18 1 3.3121 -3.5938 -4.0277 19 6 5.5226 1.0270 -1.3688 20 6 6.3101 1.3895 -0.2841 21 6 7.6853 1.2946 -0.3679 22 6 8.2785 0.8277 -1.5288 23 9 9.6238 0.7310 -1.6071 24 6 7.4951 0.4652 -2.6115 25 6 6.1197 0.5641 -2.5338 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3727 3.9658 0.7581 32 1 0.6597 3.6814 0.3670 33 1 1.1613 3.9042 2.0604 34 1 2.3517 1.4036 -2.3678 35 1 3.8243 1.2665 -3.3583 36 1 1.2728 -0.5450 -5.3002 37 1 5.8475 1.7499 0.6229 38 1 8.2984 1.5807 0.4739 39 1 7.9599 0.1051 -3.5175 40 1 5.5090 0.2817 -3.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558147427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:57 Heat of formation + Delta-G solvation = -88.806232 kcal Electronic energy + Delta-G solvation = -24653.024268 eV Core-core repulsion = 20962.101024 eV Total energy + Delta-G solvation = -3690.923244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.44570 -40.50364 -38.32876 -36.87211 -35.46603 -33.04772 -32.76753 -30.64913 -29.41005 -27.75418 -27.06935 -25.67407 -23.61774 -22.53257 -22.04091 -21.17960 -19.27563 -17.45083 -17.22264 -16.81698 -16.54649 -16.04464 -15.37617 -15.22095 -15.10132 -14.75866 -14.23727 -14.11263 -13.93475 -13.54434 -13.12424 -13.05216 -12.66903 -12.62120 -12.30916 -12.26883 -11.90389 -11.75031 -11.39979 -11.23798 -11.19809 -10.92678 -10.75083 -10.57948 -10.38364 -10.29138 -10.03233 -9.91918 -9.23814 -8.79844 -8.63454 -8.49565 -7.26980 -6.40604 -4.48755 1.56114 1.73240 3.00087 3.13432 3.19354 3.22852 3.39077 4.09477 4.15943 4.21618 4.76022 4.88005 4.91675 5.24607 5.27026 5.31724 5.41650 5.52172 5.61298 5.78384 5.80298 5.82598 5.84769 5.99968 6.01979 6.23436 6.34313 6.48341 6.55695 6.61855 6.66406 6.71005 6.78493 6.90848 7.01563 7.12256 7.32193 7.50989 7.63156 7.73401 7.94776 8.52133 8.65119 9.17576 10.64898 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.007192 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.194966 B = 3892.383882 C = 5980.015290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.086 3.914 4 H 0.089 0.911 5 O -0.362 6.362 6 C 0.029 3.971 7 C 0.495 3.505 8 O -0.529 6.529 9 N -0.532 5.532 10 C 0.224 3.776 11 C -0.545 4.545 12 H 0.068 0.932 13 C 0.074 3.926 14 N -0.882 5.882 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.162 3.838 20 C -0.155 4.155 21 C -0.138 4.138 22 C 0.051 3.949 23 F -0.153 7.153 24 C -0.135 4.135 25 C -0.115 4.115 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.270 0.730 37 H 0.187 0.813 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 3.743 4.460 5.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.026 3.974 4 H 0.107 0.893 5 O -0.279 6.279 6 C -0.068 4.068 7 C 0.285 3.715 8 O -0.408 6.408 9 N -0.253 5.253 10 C 0.106 3.894 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.518 5.518 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.065 3.935 20 C -0.175 4.175 21 C -0.158 4.158 22 C 0.031 3.969 23 F -0.132 7.132 24 C -0.155 4.155 25 C -0.135 4.135 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.203 0.797 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.183 3.825 4.951 6.368 hybrid contribution 0.142 -0.871 -0.674 1.111 sum 1.325 2.954 4.277 5.364 Atomic orbital electron populations 1.21613 0.95266 1.01435 1.01361 1.22133 0.96808 0.92427 1.06330 1.22122 0.89692 0.97433 0.88180 0.89310 1.87969 1.87933 1.20202 1.31814 1.22801 0.99586 0.82201 1.02175 1.21599 0.91891 0.76230 0.81806 1.90232 1.63602 1.48516 1.38467 1.46115 1.04425 1.62542 1.12190 1.19802 0.90336 0.97951 0.81338 1.21257 1.34015 0.91363 1.11612 0.91366 1.24906 0.94851 0.98390 0.95018 1.69890 1.33324 1.34736 1.13875 0.86578 0.78711 0.84549 0.78003 1.19657 1.20971 1.19851 1.18120 0.83265 0.97441 0.94648 1.22715 0.92224 1.01064 1.01460 1.21051 0.95554 1.02406 0.96759 1.17734 0.76562 1.06135 0.96509 1.91423 1.30214 1.94611 1.96936 1.20866 0.93602 1.02936 0.98064 1.21033 0.93754 1.00197 0.98538 0.93064 0.92675 0.92785 0.84709 0.91964 0.94171 0.94038 0.89717 0.93353 0.93553 0.92034 0.79660 0.85451 0.85138 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.81 37.16 0.36 -1.81 16 2 C -0.14 -2.50 5.53 -26.73 -0.15 -2.65 16 3 C 0.09 1.55 1.73 -27.88 -0.05 1.50 16 4 H 0.09 1.53 6.19 -51.93 -0.32 1.21 16 5 O -0.36 -6.24 9.44 -54.81 -0.52 -6.75 16 6 C 0.03 0.39 10.81 101.05 1.09 1.49 16 7 C 0.49 9.87 6.89 -10.99 -0.08 9.79 16 8 O -0.53 -11.22 12.95 -14.04 -0.18 -11.40 16 9 N -0.53 -10.75 2.69 -114.72 -0.31 -11.06 16 10 C 0.22 4.77 4.12 -5.19 -0.02 4.75 16 11 C -0.54 -12.43 5.93 -34.44 -0.20 -12.63 16 12 H 0.07 1.61 7.60 -52.48 -0.40 1.22 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -21.75 13.29 55.43 0.74 -21.02 16 15 Si 0.89 18.85 29.54 -169.99 -5.02 13.83 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C 0.16 3.19 6.47 -83.66 -0.54 2.65 16 20 C -0.16 -2.91 9.05 -39.40 -0.36 -3.27 16 21 C -0.14 -2.33 10.02 -39.54 -0.40 -2.73 16 22 C 0.05 0.86 7.30 -39.41 -0.29 0.57 16 23 F -0.15 -2.52 17.27 2.25 0.04 -2.48 16 24 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 16 25 C -0.11 -2.14 9.02 -39.40 -0.36 -2.49 16 26 H 0.05 0.74 7.81 -51.93 -0.41 0.34 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.14 2.71 4.17 -51.93 -0.22 2.49 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.04 5.93 -51.93 -0.31 0.73 16 35 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 36 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.19 3.66 4.53 -56.22 -0.25 3.41 16 38 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.15 2.92 6.13 -52.49 -0.32 2.60 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -25.35 331.10 -6.83 -32.19 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.10 Total: 7.57 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.47 Total: -5.86 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.43 Total: -32.08 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.70 Total: -18.16 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -25.35 -6.83 -32.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558147427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.619 kcal (2) G-P(sol) polarization free energy of solvation -25.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds