Wall clock time and date at job start Tue Mar 31 2020 08:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46927 * 2 1 4 4 H 1.09002 * 109.46823 * 304.67962 * 3 2 1 5 5 O 1.42900 * 109.46851 * 64.67804 * 3 2 1 6 6 C 1.42897 * 113.99887 * 209.99841 * 5 3 2 7 7 C 1.50694 * 109.47022 * 184.68263 * 3 2 1 8 8 O 1.21294 * 119.99557 * 252.66911 * 7 3 2 9 9 N 1.34772 * 120.00581 * 72.66753 * 7 3 2 10 10 C 1.46506 * 119.99610 * 4.99443 * 9 7 3 11 11 C 1.50698 * 109.46823 * 264.13673 * 10 9 7 12 12 H 1.08008 * 120.00114 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00126 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99810 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00232 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46890 * 60.00459 * 15 13 11 17 17 H 1.48502 * 109.46881 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47028 * 300.00161 * 15 13 11 19 19 C 1.40026 * 120.00583 * 184.98973 * 9 7 3 20 20 C 1.38856 * 120.04474 * 353.19042 * 19 9 7 21 21 C 1.38107 * 119.95743 * 180.25790 * 20 19 9 22 22 C 1.38480 * 120.04124 * 359.46271 * 21 20 19 23 23 F 1.35104 * 119.95079 * 180.23761 * 22 21 20 24 24 C 1.38466 * 120.08940 * 0.51346 * 22 21 20 25 25 C 1.38110 * 120.04985 * 359.76935 * 24 22 21 26 26 H 1.08994 * 109.47381 * 299.99866 * 1 2 3 27 27 H 1.08999 * 109.47068 * 60.00100 * 1 2 3 28 28 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47422 * 240.00213 * 2 1 3 30 30 H 1.08999 * 109.47068 * 119.99900 * 2 1 3 31 31 H 1.09001 * 109.47219 * 300.00208 * 6 5 3 32 32 H 1.08994 * 109.47132 * 60.00452 * 6 5 3 33 33 H 1.09000 * 109.47320 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47298 * 24.13322 * 10 9 7 35 35 H 1.08997 * 109.47128 * 144.13768 * 10 9 7 36 36 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.01753 * 359.97405 * 20 19 9 38 38 H 1.08000 * 119.98131 * 179.72257 * 21 20 19 39 39 H 1.08007 * 119.97652 * 179.74585 * 24 22 21 40 40 H 1.07997 * 120.02763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6098 1.9800 -0.8451 5 8 1.6554 2.0837 1.2178 6 6 1.4500 3.4923 1.0934 7 6 3.5425 1.4442 -0.1160 8 8 4.2246 1.7304 0.8453 9 7 4.1283 1.1276 -1.2877 10 6 3.3063 0.8889 -2.4767 11 6 3.0645 -0.5905 -2.6314 12 1 3.4818 -1.2836 -1.9158 13 6 2.3106 -1.0592 -3.6863 14 7 1.8029 -0.2153 -4.5579 15 14 2.0114 -2.8931 -3.8784 16 1 1.3066 -3.4082 -2.6771 17 1 1.1781 -3.1351 -5.0836 18 1 3.3121 -3.5938 -4.0277 19 6 5.5226 1.0270 -1.3688 20 6 6.3101 1.3895 -0.2841 21 6 7.6853 1.2946 -0.3679 22 6 8.2785 0.8277 -1.5288 23 9 9.6238 0.7310 -1.6071 24 6 7.4951 0.4652 -2.6115 25 6 6.1197 0.5641 -2.5338 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3727 3.9658 0.7581 32 1 0.6597 3.6814 0.3670 33 1 1.1613 3.9042 2.0604 34 1 2.3517 1.4036 -2.3678 35 1 3.8243 1.2665 -3.3583 36 1 1.2728 -0.5450 -5.3002 37 1 5.8475 1.7499 0.6229 38 1 8.2984 1.5807 0.4739 39 1 7.9599 0.1051 -3.5175 40 1 5.5090 0.2817 -3.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558147427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:56 Heat of formation + Delta-G solvation = -100.005592 kcal Electronic energy + Delta-G solvation = -24653.509909 eV Core-core repulsion = 20962.101024 eV Total energy + Delta-G solvation = -3691.408885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.79209 -42.02791 -39.72562 -38.27626 -37.07765 -34.63926 -34.30615 -32.07217 -30.87480 -29.39274 -28.41470 -26.92675 -25.31520 -23.98326 -23.49421 -22.58865 -20.76674 -18.93506 -18.75459 -18.48200 -18.06769 -17.40206 -16.76333 -16.67372 -16.48604 -16.36037 -15.65275 -15.58211 -15.37147 -14.91059 -14.50284 -14.40496 -14.31858 -14.05134 -13.81469 -13.66732 -13.37741 -13.22855 -12.91288 -12.78059 -12.64017 -12.40995 -12.25854 -12.05231 -11.99801 -11.74200 -11.56980 -11.24035 -10.84695 -10.59930 -10.04742 -10.00154 -8.79949 -8.21286 -6.33579 0.11439 0.31879 1.44825 1.45196 1.50128 1.55122 1.88648 2.40924 2.75177 2.81112 3.09369 3.34423 3.41237 3.87288 3.92459 3.97627 4.04005 4.33511 4.38082 4.45305 4.50420 4.50964 4.55332 4.65585 4.79708 4.87760 4.95290 5.04319 5.08715 5.17773 5.25175 5.26765 5.33119 5.35164 5.56304 5.63721 5.68902 5.95117 6.02166 6.14653 6.35271 6.72838 7.06049 7.34488 8.82858 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.007192 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.194966 B = 3892.383882 C = 5980.015290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.093 3.907 4 H 0.094 0.906 5 O -0.375 6.375 6 C 0.022 3.978 7 C 0.488 3.512 8 O -0.545 6.545 9 N -0.535 5.535 10 C 0.239 3.761 11 C -0.537 4.537 12 H 0.057 0.943 13 C 0.040 3.960 14 N -0.908 5.908 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.138 3.862 20 C -0.164 4.164 21 C -0.130 4.130 22 C 0.053 3.947 23 F -0.147 7.147 24 C -0.127 4.127 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.270 0.730 37 H 0.178 0.822 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 3.616 4.894 6.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.032 3.968 4 H 0.111 0.889 5 O -0.293 6.293 6 C -0.074 4.074 7 C 0.280 3.720 8 O -0.426 6.426 9 N -0.255 5.255 10 C 0.119 3.881 11 C -0.575 4.575 12 H 0.075 0.925 13 C -0.162 4.162 14 N -0.545 5.545 15 Si 0.768 3.232 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.202 1.202 19 C 0.042 3.958 20 C -0.183 4.183 21 C -0.149 4.149 22 C 0.033 3.967 23 F -0.125 7.125 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.194 0.806 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.429 3.701 5.393 6.695 hybrid contribution 0.166 -0.779 -0.764 1.104 sum 1.595 2.922 4.629 5.702 Atomic orbital electron populations 1.21563 0.93325 1.02203 1.01875 1.22033 0.98483 0.92184 1.04859 1.22036 0.88240 0.97691 0.88810 0.88853 1.87941 1.87776 1.22153 1.31385 1.23051 0.99836 0.80260 1.04267 1.22038 0.92815 0.75749 0.81443 1.90225 1.64212 1.49317 1.38815 1.46077 1.04770 1.62734 1.11944 1.19519 0.90118 0.97059 0.81358 1.21267 1.33315 0.91865 1.11022 0.92487 1.25401 0.94852 1.01091 0.94889 1.69958 1.34230 1.35931 1.14418 0.85840 0.78282 0.81166 0.77947 1.19195 1.20881 1.20216 1.18404 0.83191 0.98628 0.95581 1.22627 0.93040 1.01767 1.00877 1.21271 0.94933 1.01151 0.97579 1.17764 0.76830 1.05699 0.96452 1.91445 1.29680 1.94515 1.96897 1.21085 0.92792 1.01757 0.99019 1.20971 0.94545 1.00993 0.97900 0.91826 0.92794 0.91927 0.86919 0.92484 0.95039 0.92230 0.87217 0.93589 0.94846 0.92052 0.80578 0.82874 0.82678 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.81 71.98 0.71 -3.25 16 2 C -0.14 -4.91 5.53 30.60 0.17 -4.74 16 3 C 0.09 3.32 1.73 29.85 0.05 3.37 16 4 H 0.09 3.20 6.19 -2.39 -0.01 3.19 16 5 O -0.38 -12.55 9.44 -130.26 -1.23 -13.78 16 6 C 0.02 0.56 10.81 113.37 1.23 1.78 16 7 C 0.49 19.66 6.89 87.66 0.60 20.26 16 8 O -0.55 -23.30 12.95 15.65 0.20 -23.09 16 9 N -0.53 -21.93 2.69 -635.24 -1.71 -23.64 16 10 C 0.24 10.33 4.12 85.63 0.35 10.68 16 11 C -0.54 -24.72 5.93 25.60 0.15 -24.57 16 12 H 0.06 2.73 7.60 -2.91 -0.02 2.71 16 13 C 0.04 1.89 5.46 84.65 0.46 2.36 16 14 N -0.91 -44.86 13.29 21.45 0.28 -44.58 16 15 Si 0.94 38.35 29.54 68.60 2.03 40.37 16 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 19 C 0.14 5.46 6.47 38.13 0.25 5.71 16 20 C -0.16 -6.07 9.05 22.39 0.20 -5.87 16 21 C -0.13 -4.16 10.02 22.30 0.22 -3.94 16 22 C 0.05 1.67 7.30 22.38 0.16 1.84 16 23 F -0.15 -4.44 17.27 44.97 0.78 -3.67 16 24 C -0.13 -4.08 10.02 22.29 0.22 -3.86 16 25 C -0.12 -4.58 9.02 22.39 0.20 -4.38 16 26 H 0.06 1.73 7.81 -2.39 -0.02 1.71 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 4.55 4.17 -2.39 -0.01 4.54 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 2.01 5.93 -2.39 -0.01 2.00 16 35 H 0.03 1.53 6.87 -2.39 -0.02 1.52 16 36 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 37 H 0.18 6.98 4.53 -62.01 -0.28 6.70 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.14 5.47 6.13 -2.91 -0.02 5.45 16 Total: -1.00 -52.74 331.10 6.13 -46.61 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.79 Total: 26.37 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.98 Total: -4.60 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.43 Total: -68.22 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.03 Total: -36.87 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.67 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -52.74 6.13 -46.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558147427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.396 kcal (2) G-P(sol) polarization free energy of solvation -52.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds