Wall clock time and date at job start Tue Mar 31 2020 08:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47316 * 2 1 4 4 H 1.09007 * 109.46961 * 54.86043 * 3 2 1 5 5 O 1.42897 * 109.47170 * 294.86554 * 3 2 1 6 6 C 1.42902 * 114.00159 * 149.99878 * 5 3 2 7 7 C 1.50698 * 109.47598 * 174.86064 * 3 2 1 8 8 O 1.21289 * 119.99644 * 101.20167 * 7 3 2 9 9 N 1.34779 * 120.00113 * 281.20751 * 7 3 2 10 10 C 1.46499 * 119.99802 * 3.61196 * 9 7 3 11 11 C 1.50697 * 109.47391 * 273.02258 * 10 9 7 12 12 H 1.08005 * 119.99581 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00405 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99660 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00181 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46916 * 59.99402 * 15 13 11 17 17 H 1.48498 * 109.46829 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46636 * 299.99652 * 15 13 11 19 19 C 1.40024 * 120.00096 * 183.88786 * 9 7 3 20 20 C 1.38851 * 120.04668 * 172.24886 * 19 9 7 21 21 C 1.38108 * 119.95378 * 179.72265 * 20 19 9 22 22 C 1.38480 * 120.04750 * 0.54730 * 21 20 19 23 23 F 1.35098 * 119.95440 * 179.70193 * 22 21 20 24 24 C 1.38470 * 120.08766 * 359.72635 * 22 21 20 25 25 C 1.38122 * 120.04616 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47233 * 299.99845 * 1 2 3 28 28 H 1.09005 * 109.46982 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.47086 * 240.00538 * 2 1 3 30 30 H 1.08999 * 109.47625 * 120.00432 * 2 1 3 31 31 H 1.08999 * 109.47139 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47160 * 299.99719 * 6 5 3 33 33 H 1.08994 * 109.47646 * 59.99745 * 6 5 3 34 34 H 1.09002 * 109.47173 * 33.02484 * 10 9 7 35 35 H 1.09000 * 109.46908 * 153.01919 * 10 9 7 36 36 H 0.97000 * 119.99641 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.01675 * 359.97438 * 20 19 9 38 38 H 1.08001 * 119.97752 * 180.24703 * 21 20 19 39 39 H 1.07998 * 119.97851 * 179.97438 * 24 22 21 40 40 H 1.07995 * 120.02063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8404 5 8 1.6648 2.0804 -1.2223 6 6 1.4585 3.4895 -1.1032 7 6 3.5417 1.4445 0.1273 8 8 4.2331 1.6185 -0.8539 9 7 4.1162 1.2528 1.3313 10 6 3.2844 0.9639 2.5021 11 6 2.8353 2.2577 3.1309 12 1 3.1388 3.2009 2.7011 13 6 2.0370 2.2374 4.2549 14 7 1.6671 1.0889 4.7780 15 14 1.4798 3.8412 5.0339 16 1 0.6912 4.6227 4.0477 17 1 0.6368 3.5483 6.2208 18 1 2.6682 4.6274 5.4521 19 6 5.5077 1.3355 1.4642 20 6 6.0891 1.2990 2.7246 21 6 7.4620 1.3749 2.8532 22 6 8.2581 1.4988 1.7269 23 9 9.6006 1.5790 1.8552 24 6 7.6799 1.5412 0.4694 25 6 6.3076 1.4593 0.3361 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.1771 3.8988 -2.0734 32 1 0.6627 3.6806 -0.3832 33 1 2.3786 3.9639 -0.7621 34 1 2.4120 0.3873 2.1947 35 1 3.8628 0.3896 3.2259 36 1 1.1052 1.0746 5.5685 37 1 5.4682 1.2071 3.6036 38 1 7.9149 1.3425 3.8331 39 1 8.3024 1.6383 -0.4078 40 1 5.8571 1.4928 -0.6449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558147431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:59 Heat of formation + Delta-G solvation = -89.698238 kcal Electronic energy + Delta-G solvation = -24584.153334 eV Core-core repulsion = 20893.191409 eV Total energy + Delta-G solvation = -3690.961925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.46205 -40.49675 -38.33577 -36.86761 -35.41292 -33.20043 -32.81057 -30.67527 -29.44750 -27.68554 -27.06516 -25.64173 -23.67660 -22.47132 -22.25707 -21.12458 -19.36647 -17.42277 -17.20454 -16.94042 -16.44787 -16.01516 -15.37652 -15.23525 -15.11972 -14.77171 -14.25348 -14.13944 -14.00456 -13.64289 -13.26330 -13.08043 -12.68508 -12.62030 -12.32937 -12.17652 -12.00903 -11.76631 -11.50929 -11.25398 -11.19123 -11.01161 -10.76072 -10.61629 -10.42856 -10.39864 -10.18278 -9.89259 -9.21901 -8.78865 -8.65887 -8.50664 -7.27372 -6.38748 -4.48865 1.54266 1.70725 3.00706 3.11769 3.18251 3.21078 3.38872 4.08701 4.15481 4.20424 4.74207 4.85005 4.94536 5.22980 5.25475 5.27919 5.41675 5.59709 5.63613 5.69282 5.75689 5.79393 5.89629 5.92072 5.99672 6.07551 6.20763 6.33084 6.34525 6.50788 6.56466 6.66499 6.70977 6.76227 6.95479 7.11440 7.32671 7.52226 7.63035 7.76172 7.93795 8.53587 8.66281 9.19971 10.67041 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011031 B = 0.006694 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.687370 B = 4181.894213 C = 5821.143190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.076 3.924 4 H 0.111 0.889 5 O -0.362 6.362 6 C 0.030 3.970 7 C 0.497 3.503 8 O -0.529 6.529 9 N -0.532 5.532 10 C 0.219 3.781 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.072 3.928 14 N -0.884 5.884 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.162 3.838 20 C -0.119 4.119 21 C -0.134 4.134 22 C 0.050 3.950 23 F -0.153 7.153 24 C -0.137 4.137 25 C -0.155 4.155 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.269 0.731 37 H 0.149 0.851 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -0.463 -5.586 5.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.129 0.871 5 O -0.280 6.280 6 C -0.067 4.067 7 C 0.287 3.713 8 O -0.408 6.408 9 N -0.253 5.253 10 C 0.100 3.900 11 C -0.587 4.587 12 H 0.080 0.920 13 C -0.133 4.133 14 N -0.521 5.521 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.199 1.199 19 C 0.065 3.935 20 C -0.139 4.139 21 C -0.153 4.153 22 C 0.030 3.970 23 F -0.131 7.131 24 C -0.156 4.156 25 C -0.174 4.174 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.358 -0.572 -6.112 6.287 hybrid contribution 0.064 1.158 1.108 1.604 sum 1.422 0.586 -5.004 5.235 Atomic orbital electron populations 1.21677 0.94500 1.01642 1.02410 1.21617 0.97388 0.93056 1.03284 1.22192 0.89992 0.96889 0.89391 0.87126 1.87903 1.88224 1.20600 1.31224 1.22811 1.00012 0.81751 1.02080 1.21567 0.91912 0.75726 0.82045 1.90235 1.63064 1.49362 1.38159 1.46128 1.04509 1.63697 1.10950 1.19929 0.90406 0.97901 0.81752 1.21322 1.32607 0.92326 1.12433 0.91960 1.24898 0.95353 0.96746 0.96273 1.69892 1.35190 1.24753 1.22229 0.86561 0.78955 0.83218 0.78916 1.19970 1.20898 1.19894 1.18153 0.83423 0.98013 0.93907 1.20998 0.93951 1.01765 0.97215 1.20859 0.93450 1.03379 0.97630 1.17722 0.76679 1.07717 0.94864 1.91422 1.30453 1.94377 1.96896 1.21062 0.95681 1.03329 0.95559 1.22693 0.92082 1.00619 1.02006 0.92627 0.92080 0.92286 0.91187 0.89295 0.89771 0.93679 0.94049 0.92712 0.93291 0.92083 0.83364 0.85106 0.85397 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.81 37.16 0.36 -1.65 16 2 C -0.12 -1.84 5.31 -26.73 -0.14 -1.98 16 3 C 0.08 1.37 1.70 -27.88 -0.05 1.33 16 4 H 0.11 2.11 6.34 -51.92 -0.33 1.79 16 5 O -0.36 -6.33 9.49 -54.40 -0.52 -6.84 16 6 C 0.03 0.45 10.81 101.05 1.09 1.54 16 7 C 0.50 9.99 6.84 -10.99 -0.08 9.92 16 8 O -0.53 -11.28 13.01 -13.62 -0.18 -11.45 16 9 N -0.53 -10.88 2.69 -114.72 -0.31 -11.19 16 10 C 0.22 4.73 4.15 -5.20 -0.02 4.71 16 11 C -0.55 -12.99 8.44 -34.44 -0.29 -13.28 16 12 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -22.19 13.29 55.43 0.74 -21.45 16 15 Si 0.90 19.18 29.54 -169.99 -5.02 14.16 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.16 3.21 6.49 -83.66 -0.54 2.66 16 20 C -0.12 -2.22 9.15 -39.40 -0.36 -2.58 16 21 C -0.13 -2.24 10.02 -39.54 -0.40 -2.63 16 22 C 0.05 0.85 7.30 -39.41 -0.29 0.56 16 23 F -0.15 -2.50 17.26 2.25 0.04 -2.46 16 24 C -0.14 -2.30 10.02 -39.54 -0.40 -2.69 16 25 C -0.15 -2.90 9.04 -39.40 -0.36 -3.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.46 5.94 -51.93 -0.31 1.15 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.18 4.70 -51.93 -0.24 0.94 16 35 H 0.05 1.11 6.39 -51.93 -0.33 0.78 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.15 2.86 6.30 -52.49 -0.33 2.53 16 38 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.19 3.67 4.55 -56.12 -0.26 3.41 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -26.08 334.23 -6.90 -32.98 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.13 Total: 6.95 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.56 Total: -5.72 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.43 Total: -32.64 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.69 Total: -18.30 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.08 -6.90 -32.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558147431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.717 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds