Wall clock time and date at job start Tue Mar 31 2020 08:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47316 * 2 1 4 4 H 1.09007 * 109.46961 * 54.86043 * 3 2 1 5 5 O 1.42897 * 109.47170 * 294.86554 * 3 2 1 6 6 C 1.42902 * 114.00159 * 149.99878 * 5 3 2 7 7 C 1.50698 * 109.47598 * 174.86064 * 3 2 1 8 8 O 1.21289 * 119.99644 * 101.20167 * 7 3 2 9 9 N 1.34779 * 120.00113 * 281.20751 * 7 3 2 10 10 C 1.46499 * 119.99802 * 3.61196 * 9 7 3 11 11 C 1.50697 * 109.47391 * 273.02258 * 10 9 7 12 12 H 1.08005 * 119.99581 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00405 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99660 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00181 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46916 * 59.99402 * 15 13 11 17 17 H 1.48498 * 109.46829 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46636 * 299.99652 * 15 13 11 19 19 C 1.40024 * 120.00096 * 183.88786 * 9 7 3 20 20 C 1.38851 * 120.04668 * 172.24886 * 19 9 7 21 21 C 1.38108 * 119.95378 * 179.72265 * 20 19 9 22 22 C 1.38480 * 120.04750 * 0.54730 * 21 20 19 23 23 F 1.35098 * 119.95440 * 179.70193 * 22 21 20 24 24 C 1.38470 * 120.08766 * 359.72635 * 22 21 20 25 25 C 1.38122 * 120.04616 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47233 * 299.99845 * 1 2 3 28 28 H 1.09005 * 109.46982 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.47086 * 240.00538 * 2 1 3 30 30 H 1.08999 * 109.47625 * 120.00432 * 2 1 3 31 31 H 1.08999 * 109.47139 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47160 * 299.99719 * 6 5 3 33 33 H 1.08994 * 109.47646 * 59.99745 * 6 5 3 34 34 H 1.09002 * 109.47173 * 33.02484 * 10 9 7 35 35 H 1.09000 * 109.46908 * 153.01919 * 10 9 7 36 36 H 0.97000 * 119.99641 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.01675 * 359.97438 * 20 19 9 38 38 H 1.08001 * 119.97752 * 180.24703 * 21 20 19 39 39 H 1.07998 * 119.97851 * 179.97438 * 24 22 21 40 40 H 1.07995 * 120.02063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8404 5 8 1.6648 2.0804 -1.2223 6 6 1.4585 3.4895 -1.1032 7 6 3.5417 1.4445 0.1273 8 8 4.2331 1.6185 -0.8539 9 7 4.1162 1.2528 1.3313 10 6 3.2844 0.9639 2.5021 11 6 2.8353 2.2577 3.1309 12 1 3.1388 3.2009 2.7011 13 6 2.0370 2.2374 4.2549 14 7 1.6671 1.0889 4.7780 15 14 1.4798 3.8412 5.0339 16 1 0.6912 4.6227 4.0477 17 1 0.6368 3.5483 6.2208 18 1 2.6682 4.6274 5.4521 19 6 5.5077 1.3355 1.4642 20 6 6.0891 1.2990 2.7246 21 6 7.4620 1.3749 2.8532 22 6 8.2581 1.4988 1.7269 23 9 9.6006 1.5790 1.8552 24 6 7.6799 1.5412 0.4694 25 6 6.3076 1.4593 0.3361 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.1771 3.8988 -2.0734 32 1 0.6627 3.6806 -0.3832 33 1 2.3786 3.9639 -0.7621 34 1 2.4120 0.3873 2.1947 35 1 3.8628 0.3896 3.2259 36 1 1.1052 1.0746 5.5685 37 1 5.4682 1.2071 3.6036 38 1 7.9149 1.3425 3.8331 39 1 8.3024 1.6383 -0.4078 40 1 5.8571 1.4928 -0.6449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558147431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:59 Heat of formation + Delta-G solvation = -101.497783 kcal Electronic energy + Delta-G solvation = -24584.665000 eV Core-core repulsion = 20893.191409 eV Total energy + Delta-G solvation = -3691.473591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.80427 -42.02991 -39.74411 -38.29453 -37.03667 -34.63348 -34.47810 -32.09786 -30.91284 -29.32355 -28.45565 -26.94424 -25.39067 -23.93954 -23.63472 -22.51069 -20.86265 -18.91436 -18.75452 -18.62966 -17.99158 -17.40143 -16.76906 -16.65670 -16.48272 -16.46528 -15.73131 -15.60200 -15.43083 -14.97835 -14.57822 -14.48105 -14.31823 -14.06815 -13.82954 -13.58871 -13.43324 -13.25281 -12.93291 -12.87446 -12.64254 -12.46039 -12.25151 -12.08043 -12.02815 -11.84800 -11.70267 -11.27249 -10.84624 -10.63504 -10.07385 -10.02257 -8.81378 -8.23690 -6.39746 0.09453 0.29501 1.41020 1.42540 1.47195 1.52104 1.87663 2.37700 2.72921 2.77372 3.05974 3.32835 3.39263 3.88290 3.93574 3.95425 4.07476 4.30258 4.33628 4.39059 4.45482 4.47829 4.49210 4.60807 4.76360 4.80105 4.88365 5.00457 5.05707 5.13400 5.18112 5.22830 5.24994 5.31982 5.42483 5.61061 5.66671 5.93167 5.98280 6.12874 6.32484 6.69659 7.05616 7.31590 8.80171 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011031 B = 0.006694 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.687370 B = 4181.894213 C = 5821.143190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.082 3.918 4 H 0.097 0.903 5 O -0.370 6.370 6 C 0.025 3.975 7 C 0.491 3.509 8 O -0.545 6.545 9 N -0.535 5.535 10 C 0.232 3.768 11 C -0.550 4.550 12 H 0.049 0.951 13 C 0.037 3.963 14 N -0.907 5.907 15 Si 0.947 3.053 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.136 3.864 20 C -0.128 4.128 21 C -0.125 4.125 22 C 0.053 3.947 23 F -0.146 7.146 24 C -0.128 4.128 25 C -0.163 4.163 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.271 0.729 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -0.071 -5.851 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.115 0.885 5 O -0.288 6.288 6 C -0.071 4.071 7 C 0.282 3.718 8 O -0.426 6.426 9 N -0.256 5.256 10 C 0.113 3.887 11 C -0.589 4.589 12 H 0.068 0.932 13 C -0.166 4.166 14 N -0.545 5.545 15 Si 0.772 3.228 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.202 1.202 19 C 0.040 3.960 20 C -0.148 4.148 21 C -0.144 4.144 22 C 0.033 3.967 23 F -0.125 7.125 24 C -0.148 4.148 25 C -0.182 4.182 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.593 -0.176 -6.383 6.581 hybrid contribution 0.098 1.052 1.160 1.569 sum 1.691 0.876 -5.223 5.559 Atomic orbital electron populations 1.21632 0.92739 1.02942 1.02205 1.21624 0.98864 0.91609 1.03046 1.22153 0.88496 0.98023 0.89222 0.88510 1.87889 1.88052 1.21955 1.30884 1.23010 0.99592 0.80397 1.04132 1.22003 0.92828 0.75241 0.81699 1.90228 1.63659 1.50207 1.38464 1.46085 1.04901 1.63951 1.10661 1.19659 0.90288 0.96913 0.81861 1.21398 1.32453 0.92477 1.12537 0.93235 1.25454 0.95449 0.99025 0.96633 1.69960 1.35808 1.26089 1.22644 0.85775 0.78412 0.80309 0.78293 1.19436 1.20506 1.20215 1.18452 0.83308 0.99352 0.94866 1.20946 0.94783 1.02755 0.96366 1.21080 0.92575 1.01796 0.98984 1.17750 0.76955 1.07154 0.94857 1.91445 1.29892 1.94263 1.96860 1.21284 0.95038 1.01755 0.96689 1.22599 0.92917 1.01505 1.01204 0.90611 0.93060 0.91616 0.90664 0.90179 0.86812 0.92685 0.95636 0.92635 0.94506 0.91979 0.84521 0.82562 0.82766 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.81 71.98 0.71 -2.97 16 2 C -0.11 -3.59 5.31 30.60 0.16 -3.42 16 3 C 0.08 2.98 1.70 29.85 0.05 3.03 16 4 H 0.10 3.76 6.34 -2.38 -0.02 3.75 16 5 O -0.37 -12.73 9.49 -130.65 -1.24 -13.97 16 6 C 0.02 0.71 10.81 113.37 1.23 1.94 16 7 C 0.49 20.06 6.84 87.66 0.60 20.65 16 8 O -0.55 -23.52 13.01 15.27 0.20 -23.32 16 9 N -0.54 -22.34 2.69 -635.25 -1.71 -24.05 16 10 C 0.23 10.26 4.15 85.63 0.36 10.62 16 11 C -0.55 -26.40 8.44 25.60 0.22 -26.19 16 12 H 0.05 2.47 7.81 -2.91 -0.02 2.45 16 13 C 0.04 1.78 5.46 84.65 0.46 2.24 16 14 N -0.91 -45.66 13.29 21.45 0.28 -45.37 16 15 Si 0.95 39.01 29.54 68.60 2.03 41.04 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 19 C 0.14 5.45 6.49 38.13 0.25 5.69 16 20 C -0.13 -4.77 9.15 22.39 0.20 -4.56 16 21 C -0.13 -4.00 10.02 22.30 0.22 -3.77 16 22 C 0.05 1.67 7.30 22.38 0.16 1.84 16 23 F -0.15 -4.38 17.26 44.97 0.78 -3.61 16 24 C -0.13 -4.09 10.02 22.30 0.22 -3.87 16 25 C -0.16 -6.06 9.04 22.39 0.20 -5.86 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.65 7.83 -2.38 -0.02 1.64 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.65 5.94 -2.39 -0.01 2.64 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.05 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 2.45 4.70 -2.39 -0.01 2.44 16 35 H 0.04 1.72 6.39 -2.39 -0.02 1.70 16 36 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 37 H 0.14 5.39 6.30 -2.91 -0.02 5.37 16 38 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.18 6.99 4.55 -60.47 -0.28 6.72 16 Total: -1.00 -54.39 334.23 6.18 -48.22 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.80 Total: 25.70 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.04 Total: -4.63 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -1.42 Total: -69.42 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.04 Total: -37.29 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -54.39 6.18 -48.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558147431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.280 kcal (2) G-P(sol) polarization free energy of solvation -54.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds