Wall clock time and date at job start Tue Mar 31 2020 08:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47261 * 2 1 4 4 N 1.46500 * 109.47435 * 119.99793 * 2 1 3 5 5 C 1.35841 * 126.06202 * 275.00761 * 4 2 1 6 6 C 1.35733 * 107.56480 * 180.02562 * 5 4 2 7 7 N 1.40844 * 126.07279 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27942 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 O 1.21284 * 120.00579 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99600 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99555 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00404 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99811 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00220 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47043 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.47025 * 120.00090 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00091 * 19 17 15 23 23 C 1.40229 * 107.84614 * 0.23977 * 6 5 4 24 24 N 1.30839 * 108.34702 * 359.59086 * 23 6 5 25 25 H 1.09004 * 109.47087 * 60.00283 * 1 2 3 26 26 H 1.09000 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47612 * 299.99827 * 1 2 3 28 28 H 1.09008 * 109.47522 * 239.99874 * 2 1 3 29 29 H 1.08999 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46839 * 299.99869 * 3 2 1 31 31 H 1.08995 * 109.47046 * 59.99909 * 3 2 1 32 32 H 1.08000 * 126.21886 * 0.02831 * 5 4 2 33 33 H 0.97000 * 120.00561 * 0.02562 * 7 6 5 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 36 36 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 37 37 H 0.96995 * 120.00445 * 0.02562 * 14 12 11 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 39 39 H 1.08005 * 125.82269 * 179.73459 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1946 -0.1361 2.4237 6 6 2.6597 -1.1079 3.2492 7 7 2.9757 -0.9562 4.6133 8 6 3.4305 -2.0093 5.3209 9 8 3.5684 -3.0903 4.7814 10 7 3.7325 -1.8643 6.6263 11 6 4.2326 -3.0075 7.3938 12 6 4.4981 -2.5811 8.8147 13 8 4.2905 -1.4350 9.1528 14 7 4.9663 -3.4735 9.7097 15 6 5.2083 -3.0854 11.0021 16 1 5.0234 -2.0649 11.3032 17 6 5.6904 -4.0055 11.9250 18 7 5.9149 -5.2475 11.5589 19 14 6.0195 -3.4771 13.6862 20 1 5.6875 -2.0380 13.8414 21 1 5.1788 -4.2809 14.6095 22 1 7.4531 -3.6924 14.0080 23 6 2.7753 -2.2883 2.5010 24 7 2.3869 -2.0396 1.2766 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.9999 0.8914 2.6937 33 1 2.8655 -0.0940 5.0438 34 1 3.6229 -1.0018 7.0565 35 1 3.4881 -3.8037 7.3865 36 1 5.1570 -3.3703 6.9447 37 1 5.1327 -4.3900 9.4393 38 1 6.2512 -5.8899 12.2032 39 1 3.1233 -3.2408 2.8728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562222348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:20 Heat of formation + Delta-G solvation = 13.779457 kcal Electronic energy + Delta-G solvation = -22534.956675 eV Core-core repulsion = 18900.694593 eV Total energy + Delta-G solvation = -3634.262082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42114 -39.75044 -38.22035 -36.13602 -34.47800 -34.34747 -33.67270 -31.38204 -30.28155 -29.15238 -27.77902 -27.17732 -24.52067 -23.13122 -21.90744 -20.53654 -20.15491 -19.55833 -18.24056 -17.86036 -17.62942 -15.94004 -15.73680 -15.61444 -15.34816 -14.95412 -14.63045 -14.52661 -14.29018 -14.05632 -13.94777 -13.47394 -13.26961 -13.01749 -12.62726 -12.56544 -12.20261 -12.08698 -11.82454 -11.63603 -11.61700 -11.15086 -10.81010 -10.69923 -10.41169 -10.32839 -9.97075 -9.65097 -9.42386 -8.87046 -8.63764 -8.10474 -7.65900 -6.51639 -3.93668 1.74300 2.20517 2.72122 2.82895 3.10169 3.22563 3.29187 3.52425 3.74798 4.07977 4.15455 4.39049 4.45591 4.62961 4.64304 4.88136 4.98578 5.01342 5.13862 5.17093 5.21741 5.35126 5.49292 5.57573 5.69453 5.71153 5.90508 5.99178 6.07085 6.22017 6.69719 6.84926 6.97175 7.03877 7.46084 7.67996 7.92260 8.14939 8.44631 8.70941 9.04474 9.39198 9.86813 10.65251 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.054670 B = 0.002232 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.037315 B =12540.543069 C =12885.656679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.162 3.838 3 C -0.164 4.164 4 N -0.371 5.371 5 C 0.007 3.993 6 C 0.031 3.969 7 N -0.662 5.662 8 C 0.708 3.292 9 O -0.586 6.586 10 N -0.719 5.719 11 C 0.128 3.872 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.053 3.947 24 N -0.289 5.289 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.172 0.828 33 H 0.406 0.594 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 11.101 -20.446 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 C -0.222 4.222 4 N -0.157 5.157 5 C -0.141 4.141 6 C -0.074 4.074 7 N -0.309 5.309 8 C 0.408 3.592 9 O -0.464 6.464 10 N -0.376 5.376 11 C 0.000 4.000 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.135 4.135 24 N -0.110 5.110 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.241 0.759 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.473 10.259 -21.764 25.509 hybrid contribution 0.310 0.831 2.091 2.272 sum -8.163 11.090 -19.673 24.013 Atomic orbital electron populations 1.22254 0.93842 1.03351 1.02925 1.21171 0.94606 0.92618 0.85597 1.22196 1.02409 0.94125 1.03518 1.48513 1.52154 1.07332 1.07716 1.21644 1.07417 0.98990 0.86014 1.17488 1.10417 0.94852 0.84666 1.41820 1.68982 1.12717 1.07431 1.15695 0.78430 0.83672 0.81372 1.90784 1.60359 1.25499 1.69745 1.44710 1.69722 1.15222 1.07989 1.20822 1.00420 0.88015 0.90728 1.19747 0.85322 0.86872 0.86658 1.90489 1.58737 1.19475 1.79815 1.41794 1.55522 1.11629 1.09420 1.19772 1.40988 0.98054 0.84567 0.87625 1.25335 0.96827 0.94939 1.00693 1.69622 1.44514 1.02969 1.36289 0.85754 0.77992 0.78987 0.81324 1.19151 1.20626 1.20622 1.24567 0.99654 1.00152 0.89084 1.77374 1.20129 0.93189 1.20354 0.90635 0.91579 0.91878 0.88069 0.91426 0.90115 0.91519 0.81107 0.75919 0.75452 0.89769 0.89776 0.76980 0.91625 0.77568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 9.52 37.15 0.35 -0.61 16 2 C 0.16 1.13 3.93 -67.93 -0.27 0.86 16 3 C -0.16 -0.75 8.84 37.16 0.33 -0.42 16 4 N -0.37 -3.96 3.55 -54.53 -0.19 -4.15 16 5 C 0.01 0.07 10.65 -16.67 -0.18 -0.11 16 6 C 0.03 0.40 6.90 -83.86 -0.58 -0.17 16 7 N -0.66 -8.28 5.48 -14.39 -0.08 -8.36 16 8 C 0.71 11.28 8.54 -86.92 -0.74 10.54 16 9 O -0.59 -10.88 13.50 5.27 0.07 -10.81 16 10 N -0.72 -11.67 5.53 -66.41 -0.37 -12.04 16 11 C 0.13 2.32 6.15 -5.19 -0.03 2.29 16 12 C 0.43 9.66 7.85 -10.98 -0.09 9.57 16 13 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 14 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 15 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 19 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.05 0.78 10.84 -17.23 -0.19 0.60 16 24 N -0.29 -4.05 12.57 30.70 0.39 -3.66 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.27 7.17 -51.93 -0.37 -0.10 16 32 H 0.17 1.11 7.29 -52.49 -0.38 0.73 16 33 H 0.41 3.77 8.84 -40.82 -0.36 3.41 16 34 H 0.41 6.35 7.45 -40.82 -0.30 6.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.21 3.33 5.91 -52.48 -0.31 3.02 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -32.88 338.64 -5.93 -38.80 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -4.94 Total: 16.47 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -1.63 Total: 14.74 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.41 Total: -64.76 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: 0.16 Total: -25.75 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.88 -5.93 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562222348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds