Wall clock time and date at job start Tue Mar 31 2020 08:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47261 * 2 1 4 4 N 1.46500 * 109.47435 * 119.99793 * 2 1 3 5 5 C 1.35841 * 126.06202 * 275.00761 * 4 2 1 6 6 C 1.35733 * 107.56480 * 180.02562 * 5 4 2 7 7 N 1.40844 * 126.07279 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27942 * 10 8 7 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 O 1.21284 * 120.00579 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99600 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99555 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00404 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99811 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00220 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47043 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.47025 * 120.00090 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00091 * 19 17 15 23 23 C 1.40229 * 107.84614 * 0.23977 * 6 5 4 24 24 N 1.30839 * 108.34702 * 359.59086 * 23 6 5 25 25 H 1.09004 * 109.47087 * 60.00283 * 1 2 3 26 26 H 1.09000 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47612 * 299.99827 * 1 2 3 28 28 H 1.09008 * 109.47522 * 239.99874 * 2 1 3 29 29 H 1.08999 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46839 * 299.99869 * 3 2 1 31 31 H 1.08995 * 109.47046 * 59.99909 * 3 2 1 32 32 H 1.08000 * 126.21886 * 0.02831 * 5 4 2 33 33 H 0.97000 * 120.00561 * 0.02562 * 7 6 5 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 36 36 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 37 37 H 0.96995 * 120.00445 * 0.02562 * 14 12 11 38 38 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 39 39 H 1.08005 * 125.82269 * 179.73459 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1946 -0.1361 2.4237 6 6 2.6597 -1.1079 3.2492 7 7 2.9757 -0.9562 4.6133 8 6 3.4305 -2.0093 5.3209 9 8 3.5684 -3.0903 4.7814 10 7 3.7325 -1.8643 6.6263 11 6 4.2326 -3.0075 7.3938 12 6 4.4981 -2.5811 8.8147 13 8 4.2905 -1.4350 9.1528 14 7 4.9663 -3.4735 9.7097 15 6 5.2083 -3.0854 11.0021 16 1 5.0234 -2.0649 11.3032 17 6 5.6904 -4.0055 11.9250 18 7 5.9149 -5.2475 11.5589 19 14 6.0195 -3.4771 13.6862 20 1 5.6875 -2.0380 13.8414 21 1 5.1788 -4.2809 14.6095 22 1 7.4531 -3.6924 14.0080 23 6 2.7753 -2.2883 2.5010 24 7 2.3869 -2.0396 1.2766 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.9999 0.8914 2.6937 33 1 2.8655 -0.0940 5.0438 34 1 3.6229 -1.0018 7.0565 35 1 3.4881 -3.8037 7.3865 36 1 5.1570 -3.3703 6.9447 37 1 5.1327 -4.3900 9.4393 38 1 6.2512 -5.8899 12.2032 39 1 3.1233 -3.2408 2.8728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562222348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:19 Heat of formation + Delta-G solvation = -11.705709 kcal Electronic energy + Delta-G solvation = -22536.061795 eV Core-core repulsion = 18900.694593 eV Total energy + Delta-G solvation = -3635.367202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37981 -41.04136 -39.97334 -36.87375 -36.20904 -35.44444 -35.22556 -33.34917 -31.15418 -30.25038 -28.67420 -28.12299 -26.34872 -23.93737 -23.06082 -21.58942 -21.27926 -21.05728 -20.05642 -19.18499 -18.60771 -17.36930 -17.00642 -16.94593 -16.50048 -16.23463 -16.02026 -15.69523 -15.56248 -15.48554 -15.05276 -14.85883 -13.95174 -13.94023 -13.83891 -13.59416 -13.53421 -13.12829 -13.03350 -12.90685 -12.42576 -12.37901 -12.16561 -12.09906 -11.73608 -11.70318 -11.56131 -11.28222 -10.53511 -10.33630 -10.23370 -10.06784 -8.63539 -8.49374 -5.99342 0.85274 1.30871 1.36537 1.44541 1.58329 1.60386 1.75807 1.92741 2.29992 2.36462 3.05430 3.18065 3.32504 3.61590 3.90981 3.97898 4.13519 4.16421 4.23331 4.45589 4.49621 4.53627 4.58923 4.69979 4.80120 4.86331 4.96622 5.12413 5.23231 5.28437 5.34824 5.41074 5.83055 5.92887 5.94930 6.16446 6.49963 6.69980 7.01454 7.05480 7.44313 7.51620 7.96546 8.67731 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.054670 B = 0.002232 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.037315 B =12540.543069 C =12885.656679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 C -0.158 4.158 4 N -0.362 5.362 5 C 0.037 3.963 6 C -0.001 4.001 7 N -0.643 5.643 8 C 0.707 3.293 9 O -0.615 6.615 10 N -0.717 5.717 11 C 0.142 3.858 12 C 0.435 3.565 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.335 4.335 16 H 0.087 0.913 17 C -0.013 4.013 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.029 3.971 24 N -0.318 5.318 25 H 0.102 0.898 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.216 0.784 33 H 0.423 0.577 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 13.273 -21.159 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 C -0.216 4.216 4 N -0.148 5.148 5 C -0.112 4.112 6 C -0.106 4.106 7 N -0.293 5.293 8 C 0.406 3.594 9 O -0.496 6.496 10 N -0.375 5.375 11 C 0.014 3.986 12 C 0.222 3.778 13 O -0.511 6.511 14 N -0.196 5.196 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.213 4.213 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.157 4.157 24 N -0.141 5.141 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.261 0.739 34 H 0.250 0.750 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.227 12.455 -22.525 27.343 hybrid contribution 0.464 0.242 2.125 2.188 sum -8.763 12.696 -20.400 25.576 Atomic orbital electron populations 1.22225 0.92668 1.02418 1.04478 1.21614 0.95504 0.93807 0.84109 1.22199 1.01838 0.92218 1.05358 1.48997 1.50449 1.06351 1.09040 1.22262 1.04057 1.00002 0.84856 1.17657 1.12837 0.95167 0.84939 1.41526 1.67949 1.12551 1.07226 1.15768 0.78456 0.84030 0.81101 1.90785 1.61595 1.26988 1.70205 1.44570 1.70029 1.14782 1.08122 1.20610 1.01314 0.88782 0.87922 1.20409 0.83375 0.86112 0.87918 1.90466 1.59280 1.20581 1.80804 1.41846 1.56416 1.12066 1.09267 1.19770 1.42848 0.97690 0.86096 0.89488 1.26140 0.96068 0.94846 1.04274 1.69688 1.44679 1.03656 1.37648 0.84804 0.78164 0.78418 0.76543 1.19344 1.19746 1.19736 1.24320 1.00993 1.00334 0.90062 1.77307 1.21282 0.95403 1.20122 0.87922 0.93739 0.91476 0.88310 0.92279 0.87713 0.90295 0.76738 0.73907 0.74961 0.88803 0.88808 0.76681 0.91123 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.52 71.98 0.69 -0.77 16 2 C 0.15 1.73 3.93 44.99 0.18 1.90 16 3 C -0.16 -0.87 8.84 71.98 0.64 -0.23 16 4 N -0.36 -7.15 3.55 -326.43 -1.16 -8.31 16 5 C 0.04 0.65 10.65 83.49 0.89 1.54 16 6 C 0.00 -0.03 6.90 37.59 0.26 0.23 16 7 N -0.64 -15.37 5.48 -317.70 -1.74 -17.11 16 8 C 0.71 22.31 8.54 179.05 1.53 23.84 16 9 O -0.62 -23.31 13.50 -4.04 -0.05 -23.36 16 10 N -0.72 -22.90 5.53 -482.28 -2.67 -25.57 16 11 C 0.14 5.11 6.15 85.63 0.53 5.64 16 12 C 0.43 19.73 7.85 87.66 0.69 20.41 16 13 O -0.62 -31.49 15.24 -3.04 -0.05 -31.54 16 14 N -0.56 -27.90 5.29 -306.99 -1.62 -29.52 16 15 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.92 -48.68 13.05 21.66 0.28 -48.39 16 19 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C 0.03 0.88 10.84 85.32 0.92 1.81 16 24 N -0.32 -9.00 12.57 -56.78 -0.71 -9.71 16 25 H 0.10 0.39 8.14 -2.38 -0.02 0.38 16 26 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.08 0.27 7.17 -2.39 -0.02 0.25 16 32 H 0.22 1.74 7.29 -2.91 -0.02 1.72 16 33 H 0.42 6.98 8.84 -92.71 -0.82 6.16 16 34 H 0.41 12.52 7.45 -92.71 -0.69 11.83 16 35 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 38 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.18 6.36 5.91 -2.91 -0.02 6.35 16 Total: -1.00 -72.45 338.64 0.78 -71.67 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -1.12 Total: 41.50 kcal Atomic # 6 Polarization: 29.09 SS G_CDS: 7.60 Total: 36.69 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -7.62 Total: -138.62 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.10 Total: -54.90 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.45 0.78 -71.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562222348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds