Wall clock time and date at job start Tue Mar 31 2020 08:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47420 * 2 1 4 4 H 1.08996 * 109.47207 * 54.99651 * 3 2 1 5 5 O 1.42906 * 109.46912 * 294.99757 * 3 2 1 6 6 C 1.53003 * 109.47384 * 175.00188 * 3 2 1 7 7 N 1.46502 * 109.46938 * 185.00158 * 6 3 2 8 8 C 1.40007 * 119.99679 * 180.02562 * 7 6 3 9 9 C 1.38639 * 120.09830 * 359.97438 * 8 7 6 10 10 C 1.38288 * 120.00011 * 179.97438 * 9 8 7 11 11 C 1.38270 * 120.20774 * 359.97438 * 10 9 8 12 12 C 1.38244 * 120.19345 * 0.02562 * 11 10 9 13 13 C 1.38722 * 119.99846 * 359.97438 * 12 11 10 14 14 S 1.76202 * 120.10416 * 180.02562 * 13 12 11 15 15 C 1.81392 * 102.99827 * 354.28764 * 14 13 12 16 16 H 1.09001 * 109.47857 * 52.13198 * 15 14 13 17 17 C 1.53003 * 109.47329 * 172.13488 * 15 14 13 18 18 C 1.50702 * 109.46933 * 292.13059 * 15 14 13 19 19 H 1.07997 * 120.00008 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99702 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00453 * 359.97438 * 20 18 15 22 22 Si 1.86811 * 119.99825 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47000 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46884 * 119.99825 * 22 20 18 25 25 H 1.48490 * 109.47004 * 240.00052 * 22 20 18 26 26 H 1.09001 * 109.47409 * 300.00613 * 1 2 3 27 27 H 1.09004 * 109.47073 * 60.00002 * 1 2 3 28 28 H 1.08997 * 109.47505 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47414 * 239.99876 * 2 1 3 30 30 H 1.08999 * 109.47091 * 119.99534 * 2 1 3 31 31 H 0.96693 * 114.00120 * 299.99823 * 5 3 2 32 32 H 1.08995 * 109.47266 * 64.99977 * 6 3 2 33 33 H 1.09002 * 109.46639 * 304.99576 * 6 3 2 34 34 H 0.97001 * 119.99792 * 359.97438 * 7 6 3 35 35 H 1.08003 * 119.99920 * 0.25311 * 9 8 7 36 36 H 1.08000 * 119.89383 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.89923 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.00034 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47506 * 66.02370 * 17 15 14 40 40 H 1.08998 * 109.47502 * 186.03158 * 17 15 14 41 41 H 1.09005 * 109.46760 * 306.03295 * 17 15 14 42 42 H 0.97000 * 120.00326 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 3.5649 1.4443 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.4137 3.0808 0.3731 9 6 6.3196 2.0314 0.3863 10 6 7.6727 2.2877 0.5117 11 6 8.1270 3.5888 0.6236 12 6 7.2309 4.6415 0.6114 13 6 5.8717 4.3940 0.4860 14 16 4.7273 5.7336 0.4695 15 6 5.7775 7.1717 0.8148 16 1 6.6194 7.1815 0.1226 17 6 4.9601 8.4535 0.6418 18 6 6.2911 7.0906 2.2293 19 1 6.0138 6.2570 2.8575 20 6 7.1150 8.0805 2.7213 21 7 7.4531 9.0953 1.9562 22 14 7.7511 7.9804 4.4749 23 1 7.2283 6.7500 5.1216 24 1 9.2354 7.9406 4.4615 25 1 7.2946 9.1710 5.2358 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6542 -2.0139 32 1 4.0030 0.9836 -0.7596 33 1 3.8571 0.8800 1.0113 34 1 3.4107 3.5590 0.2363 35 1 5.9689 1.0141 0.2942 36 1 8.3769 1.4689 0.5222 37 1 9.1848 3.7832 0.7208 38 1 7.5891 5.6566 0.6994 39 1 4.1826 8.4944 1.4046 40 1 5.6151 9.3187 0.7439 41 1 4.5002 8.4605 -0.3464 42 1 8.0330 9.7916 2.3023 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567263014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:06 Heat of formation + Delta-G solvation = -44.187379 kcal Electronic energy + Delta-G solvation = -21360.215655 eV Core-core repulsion = 18237.440405 eV Total energy + Delta-G solvation = -3122.775250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.07202 -38.01698 -34.82328 -34.01602 -33.05116 -30.57032 -30.26145 -29.63920 -27.09197 -25.31475 -23.78327 -22.36725 -21.73420 -21.32403 -20.50596 -17.29029 -16.67883 -16.41006 -16.30215 -16.01262 -15.43189 -14.83285 -14.56015 -14.12461 -13.99806 -13.44464 -13.37091 -13.21615 -13.08343 -12.86147 -12.37912 -12.28461 -12.06846 -11.66599 -11.52376 -11.28187 -11.12766 -11.00591 -10.95541 -10.66406 -10.44659 -10.32999 -10.15182 -9.94545 -9.71184 -9.31026 -8.90425 -8.85008 -8.44057 -7.30971 -6.31443 -6.02362 -4.22895 1.95061 2.18012 2.76491 3.24165 3.32578 3.38276 3.58443 3.81683 4.23578 4.36124 4.43042 4.49503 4.72097 4.76778 5.10605 5.16536 5.19167 5.37063 5.45180 5.50279 5.57921 5.61524 5.65384 5.83876 5.94572 5.98011 6.11439 6.24899 6.55622 6.64978 6.72414 6.77437 6.86729 6.95253 7.22111 7.35366 7.42959 7.45346 7.62537 7.76046 7.84266 8.06142 8.10905 8.78830 9.41625 10.90061 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.004070 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.498523 B = 6878.368292 C = 7518.935849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.095 3.905 4 H 0.104 0.896 5 O -0.554 6.554 6 C 0.099 3.901 7 N -0.742 5.742 8 C 0.219 3.781 9 C -0.197 4.197 10 C -0.094 4.094 11 C -0.165 4.165 12 C -0.067 4.067 13 C -0.119 4.119 14 S -0.201 6.201 15 C 0.097 3.903 16 H 0.049 0.951 17 C -0.124 4.124 18 C -0.515 4.515 19 H 0.067 0.933 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.374 0.626 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.407 0.593 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.019 0.981 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -16.227 -4.895 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.035 3.965 4 H 0.122 0.878 5 O -0.359 6.359 6 C -0.027 4.027 7 N -0.375 5.375 8 C 0.112 3.888 9 C -0.221 4.221 10 C -0.116 4.116 11 C -0.187 4.187 12 C -0.092 4.092 13 C -0.236 4.236 14 S 0.043 5.957 15 C -0.030 4.030 16 H 0.067 0.933 17 C -0.184 4.184 18 C -0.554 4.554 19 H 0.085 0.915 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.209 1.209 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.244 0.756 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.162 0.838 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.444 -15.747 -4.693 18.475 hybrid contribution 1.919 -0.186 0.957 2.152 sum -6.525 -15.934 -3.737 17.619 Atomic orbital electron populations 1.21694 0.94843 1.01443 1.02620 1.22154 0.97363 0.96569 1.02951 1.22204 0.92510 0.93353 0.88409 0.87773 1.86634 1.76595 1.57244 1.15403 1.21942 0.94432 0.85166 1.01142 1.44566 1.04087 1.06568 1.82279 1.17340 0.83850 0.91681 0.95965 1.20322 0.93019 0.96659 1.12145 1.20736 0.94523 0.96395 0.99945 1.20824 0.99098 0.92484 1.06273 1.21427 0.91180 1.00818 0.95738 1.21106 0.97139 0.94383 1.10930 1.84444 1.19813 1.02921 1.88491 1.21051 0.93931 0.87849 1.00162 0.93273 1.21627 0.99519 0.99923 0.97286 1.21312 1.29421 1.08323 0.96319 0.91495 1.24958 0.95726 0.94971 0.97815 1.69878 1.35726 1.10946 1.36075 0.86446 0.78599 0.78232 0.84394 1.19535 1.20834 1.20866 0.92609 0.91974 0.92818 0.91446 0.90823 0.77930 0.92525 0.91940 0.75592 0.87003 0.87074 0.86870 0.83761 0.94227 0.88502 0.96151 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.16 0.36 -0.73 16 2 C -0.15 -1.10 5.61 -26.73 -0.15 -1.25 16 3 C 0.09 0.91 3.00 -26.73 -0.08 0.83 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 5 O -0.55 -5.93 12.82 -35.23 -0.45 -6.38 16 6 C 0.10 1.09 4.56 -4.04 -0.02 1.08 16 7 N -0.74 -11.48 5.63 -58.44 -0.33 -11.81 16 8 C 0.22 3.96 6.66 -83.49 -0.56 3.40 16 9 C -0.20 -3.16 9.31 -39.41 -0.37 -3.52 16 10 C -0.09 -1.50 10.04 -39.55 -0.40 -1.90 16 11 C -0.17 -2.98 10.04 -39.57 -0.40 -3.38 16 12 C -0.07 -1.42 8.80 -39.40 -0.35 -1.77 16 13 C -0.12 -2.49 6.05 -38.92 -0.24 -2.73 16 14 S -0.20 -4.43 19.77 -107.50 -2.13 -6.55 16 15 C 0.10 2.41 2.01 -27.88 -0.06 2.36 16 16 H 0.05 1.30 7.00 -51.92 -0.36 0.93 16 17 C -0.12 -2.95 8.88 37.16 0.33 -2.62 16 18 C -0.51 -13.69 6.90 -34.44 -0.24 -13.93 16 19 H 0.07 1.86 7.71 -52.49 -0.40 1.45 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 21 N -0.89 -24.23 11.39 55.43 0.63 -23.60 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.37 2.79 9.04 45.56 0.41 3.20 16 32 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 33 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 34 H 0.41 6.81 7.02 -40.82 -0.29 6.52 16 35 H 0.11 1.48 6.74 -52.48 -0.35 1.13 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.14 3.38 5.09 -52.48 -0.27 3.11 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 2.47 6.26 -51.93 -0.32 2.14 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -28.70 351.44 -10.00 -38.71 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.76 Total: 10.75 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -2.24 Total: -22.41 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.30 Total: -35.41 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.45 Total: -6.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.13 Total: -6.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.70 -10.00 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567263014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.482 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds