Wall clock time and date at job start Tue Mar 31 2020 08:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47420 * 2 1 4 4 H 1.08996 * 109.47207 * 54.99651 * 3 2 1 5 5 O 1.42906 * 109.46912 * 294.99757 * 3 2 1 6 6 C 1.53003 * 109.47384 * 175.00188 * 3 2 1 7 7 N 1.46502 * 109.46938 * 185.00158 * 6 3 2 8 8 C 1.40007 * 119.99679 * 180.02562 * 7 6 3 9 9 C 1.38639 * 120.09830 * 359.97438 * 8 7 6 10 10 C 1.38288 * 120.00011 * 179.97438 * 9 8 7 11 11 C 1.38270 * 120.20774 * 359.97438 * 10 9 8 12 12 C 1.38244 * 120.19345 * 0.02562 * 11 10 9 13 13 C 1.38722 * 119.99846 * 359.97438 * 12 11 10 14 14 S 1.76202 * 120.10416 * 180.02562 * 13 12 11 15 15 C 1.81392 * 102.99827 * 354.28764 * 14 13 12 16 16 H 1.09001 * 109.47857 * 52.13198 * 15 14 13 17 17 C 1.53003 * 109.47329 * 172.13488 * 15 14 13 18 18 C 1.50702 * 109.46933 * 292.13059 * 15 14 13 19 19 H 1.07997 * 120.00008 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99702 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00453 * 359.97438 * 20 18 15 22 22 Si 1.86811 * 119.99825 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47000 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46884 * 119.99825 * 22 20 18 25 25 H 1.48490 * 109.47004 * 240.00052 * 22 20 18 26 26 H 1.09001 * 109.47409 * 300.00613 * 1 2 3 27 27 H 1.09004 * 109.47073 * 60.00002 * 1 2 3 28 28 H 1.08997 * 109.47505 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47414 * 239.99876 * 2 1 3 30 30 H 1.08999 * 109.47091 * 119.99534 * 2 1 3 31 31 H 0.96693 * 114.00120 * 299.99823 * 5 3 2 32 32 H 1.08995 * 109.47266 * 64.99977 * 6 3 2 33 33 H 1.09002 * 109.46639 * 304.99576 * 6 3 2 34 34 H 0.97001 * 119.99792 * 359.97438 * 7 6 3 35 35 H 1.08003 * 119.99920 * 0.25311 * 9 8 7 36 36 H 1.08000 * 119.89383 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.89923 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.00034 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47506 * 66.02370 * 17 15 14 40 40 H 1.08998 * 109.47502 * 186.03158 * 17 15 14 41 41 H 1.09005 * 109.46760 * 306.03295 * 17 15 14 42 42 H 0.97000 * 120.00326 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 3.5649 1.4443 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.4137 3.0808 0.3731 9 6 6.3196 2.0314 0.3863 10 6 7.6727 2.2877 0.5117 11 6 8.1270 3.5888 0.6236 12 6 7.2309 4.6415 0.6114 13 6 5.8717 4.3940 0.4860 14 16 4.7273 5.7336 0.4695 15 6 5.7775 7.1717 0.8148 16 1 6.6194 7.1815 0.1226 17 6 4.9601 8.4535 0.6418 18 6 6.2911 7.0906 2.2293 19 1 6.0138 6.2570 2.8575 20 6 7.1150 8.0805 2.7213 21 7 7.4531 9.0953 1.9562 22 14 7.7511 7.9804 4.4749 23 1 7.2283 6.7500 5.1216 24 1 9.2354 7.9406 4.4615 25 1 7.2946 9.1710 5.2358 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0142 1.6542 -2.0139 32 1 4.0030 0.9836 -0.7596 33 1 3.8571 0.8800 1.0113 34 1 3.4107 3.5590 0.2363 35 1 5.9689 1.0141 0.2942 36 1 8.3769 1.4689 0.5222 37 1 9.1848 3.7832 0.7208 38 1 7.5891 5.6566 0.6994 39 1 4.1826 8.4944 1.4046 40 1 5.6151 9.3187 0.7439 41 1 4.5002 8.4605 -0.3464 42 1 8.0330 9.7916 2.3023 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567263014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:06 Heat of formation + Delta-G solvation = -61.433444 kcal Electronic energy + Delta-G solvation = -21360.963500 eV Core-core repulsion = 18237.440405 eV Total energy + Delta-G solvation = -3123.523095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27419 -38.97429 -36.28403 -35.73594 -33.72421 -32.41637 -31.77719 -30.81236 -28.15624 -27.34552 -24.76753 -23.76406 -23.21097 -22.26462 -21.93031 -18.68127 -18.41858 -17.67433 -17.39294 -17.12575 -16.90644 -16.29002 -15.72744 -15.42945 -15.08138 -14.95404 -14.81564 -14.69987 -14.33449 -14.10966 -13.50062 -13.37793 -13.28333 -13.02077 -12.88861 -12.84762 -12.74164 -12.39833 -12.33249 -12.15728 -11.82851 -11.74345 -11.54316 -11.28391 -10.97305 -10.91802 -10.80486 -10.50846 -10.29687 -8.72592 -8.22806 -7.72326 -6.34038 0.52950 0.77854 1.11245 1.36440 1.39067 1.50451 1.95151 2.38821 2.55299 3.01454 3.08945 3.51846 3.70109 4.03085 4.10014 4.11372 4.31425 4.41495 4.52482 4.57328 4.61151 4.67388 4.72630 4.83331 4.85253 4.88404 4.89363 4.94614 5.11402 5.17160 5.30092 5.33798 5.37217 5.41792 5.57025 5.59950 5.76482 5.81429 6.03788 6.05284 6.51088 6.67790 6.74260 6.86750 7.32171 8.84702 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.004070 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.498523 B = 6878.368292 C = 7518.935849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.087 0.913 5 O -0.574 6.574 6 C 0.096 3.904 7 N -0.743 5.743 8 C 0.217 3.783 9 C -0.191 4.191 10 C -0.077 4.077 11 C -0.179 4.179 12 C -0.090 4.090 13 C -0.156 4.156 14 S -0.198 6.198 15 C 0.096 3.904 16 H 0.022 0.978 17 C -0.114 4.114 18 C -0.520 4.520 19 H 0.049 0.951 20 C 0.028 3.972 21 N -0.911 5.911 22 Si 0.954 3.046 23 H -0.274 1.274 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.387 0.613 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 -19.540 -4.732 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.040 3.960 4 H 0.105 0.895 5 O -0.381 6.381 6 C -0.028 4.028 7 N -0.374 5.374 8 C 0.109 3.891 9 C -0.216 4.216 10 C -0.098 4.098 11 C -0.200 4.200 12 C -0.114 4.114 13 C -0.272 4.272 14 S 0.046 5.954 15 C -0.032 4.032 16 H 0.040 0.960 17 C -0.173 4.173 18 C -0.559 4.559 19 H 0.068 0.932 20 C -0.174 4.174 21 N -0.549 5.549 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.201 1.201 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.236 0.764 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.233 0.767 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.422 -19.097 -4.545 21.361 hybrid contribution 1.891 0.698 0.841 2.184 sum -6.531 -18.398 -3.705 19.872 Atomic orbital electron populations 1.21697 0.95142 1.02041 1.01804 1.22091 0.96987 0.94785 1.04280 1.22151 0.91532 0.94681 0.87622 0.89474 1.86608 1.76953 1.58202 1.16354 1.22226 0.95331 0.82803 1.02471 1.44798 1.02958 1.08258 1.81391 1.17571 0.85443 0.90970 0.95158 1.20766 0.92678 0.97703 1.10411 1.21199 0.95394 0.96338 0.96900 1.21034 0.99388 0.92899 1.06709 1.21235 0.92165 1.00117 0.97921 1.21195 0.96757 0.95030 1.14251 1.84122 1.19618 1.02575 1.89133 1.20812 0.93872 0.89883 0.98659 0.96011 1.21479 0.98820 0.98903 0.98140 1.21311 1.29828 1.07794 0.96939 0.93223 1.25620 0.95868 0.94697 1.01177 1.69973 1.36131 1.11387 1.37436 0.85560 0.78212 0.78041 0.80287 1.19894 1.20154 1.20146 0.93394 0.92890 0.91489 0.89782 0.89734 0.76373 0.90619 0.90652 0.76711 0.83204 0.82837 0.85499 0.87449 0.94576 0.90387 0.94373 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.81 71.98 0.71 -1.20 16 2 C -0.14 -1.64 5.61 30.59 0.17 -1.47 16 3 C 0.10 1.71 3.00 30.60 0.09 1.81 16 4 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 5 O -0.57 -11.43 12.82 -148.98 -1.91 -13.34 16 6 C 0.10 1.82 4.56 86.38 0.39 2.21 16 7 N -0.74 -21.85 5.63 -338.82 -1.91 -23.76 16 8 C 0.22 7.53 6.66 38.24 0.25 7.79 16 9 C -0.19 -5.41 9.31 22.38 0.21 -5.21 16 10 C -0.08 -2.19 10.04 22.29 0.22 -1.96 16 11 C -0.18 -6.28 10.04 22.28 0.22 -6.05 16 12 C -0.09 -3.92 8.80 22.39 0.20 -3.73 16 13 C -0.16 -6.62 6.05 22.70 0.14 -6.49 16 14 S -0.20 -9.01 19.77 -56.49 -1.12 -10.12 16 15 C 0.10 4.97 2.01 29.85 0.06 5.03 16 16 H 0.02 1.24 7.00 -2.39 -0.02 1.22 16 17 C -0.11 -5.63 8.88 71.98 0.64 -4.99 16 18 C -0.52 -28.76 6.90 25.60 0.18 -28.59 16 19 H 0.05 2.87 7.71 -2.91 -0.02 2.84 16 20 C 0.03 1.52 5.30 84.66 0.45 1.96 16 21 N -0.91 -51.16 11.39 21.45 0.24 -50.92 16 22 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.77 7.82 -2.38 -0.02 0.75 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.39 4.99 9.04 -74.06 -0.67 4.32 16 32 H 0.08 1.20 7.95 -2.39 -0.02 1.18 16 33 H 0.08 1.29 7.96 -2.39 -0.02 1.27 16 34 H 0.40 13.15 7.02 -92.71 -0.65 12.49 16 35 H 0.15 3.10 6.74 -2.91 -0.02 3.08 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.11 5.40 5.09 -2.91 -0.01 5.39 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 4.13 6.26 -2.39 -0.01 4.12 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 42 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -64.28 351.44 0.97 -63.31 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.30 Total: 29.82 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.93 Total: -40.87 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.66 Total: -74.67 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.91 Total: -13.34 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.12 Total: -10.12 kcal Total: -64.28 0.97 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567263014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.880 kcal (2) G-P(sol) polarization free energy of solvation -64.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds