Wall clock time and date at job start Tue Mar 31 2020 08:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.09002 * 109.47252 * 179.44669 * 3 2 1 5 5 C 1.50706 * 109.47088 * 299.45022 * 3 2 1 6 6 H 1.07997 * 119.99950 * 120.00170 * 5 3 2 7 7 C 1.37879 * 119.99724 * 299.99462 * 5 3 2 8 8 N 1.31508 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99586 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47412 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46747 * 120.00281 * 9 7 5 12 12 H 1.48500 * 109.47157 * 240.00176 * 9 7 5 13 13 N 1.46906 * 109.46988 * 59.44692 * 3 2 1 14 14 C 1.46898 * 110.99805 * 86.09526 * 13 3 2 15 15 H 1.09002 * 109.47043 * 326.85241 * 14 13 3 16 16 C 1.50702 * 109.47226 * 86.85249 * 14 13 3 17 17 O 1.20829 * 119.99811 * 0.02562 * 16 14 13 18 18 O 1.34231 * 120.00027 * 179.97438 * 16 14 13 19 19 C 1.45196 * 116.99965 * 180.02562 * 18 16 14 20 20 C 1.50699 * 109.47056 * 206.85385 * 14 13 3 21 21 C 1.38214 * 120.01546 * 340.00023 * 20 14 13 22 22 C 1.38218 * 120.03083 * 180.02562 * 21 20 14 23 23 C 1.38268 * 120.04864 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02544 * 359.97438 * 23 22 21 25 25 C 1.38443 * 120.01128 * 160.02165 * 20 14 13 26 26 F 1.35096 * 120.02548 * 359.97438 * 25 20 14 27 27 H 1.09000 * 109.47448 * 56.14994 * 1 2 3 28 28 H 1.09003 * 109.46921 * 176.14734 * 1 2 3 29 29 H 1.09006 * 109.47116 * 296.14537 * 1 2 3 30 30 H 1.09003 * 109.47057 * 240.00055 * 2 1 3 31 31 H 1.09001 * 109.47291 * 120.00040 * 2 1 3 32 32 H 0.96998 * 120.00678 * 179.97438 * 8 7 5 33 33 H 1.00895 * 110.99824 * 210.05012 * 13 3 2 34 34 H 1.09004 * 109.47182 * 300.00123 * 19 18 16 35 35 H 1.09001 * 109.47112 * 60.00124 * 19 18 16 36 36 H 1.08999 * 109.47362 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.98259 * 359.74908 * 21 20 14 38 38 H 1.07998 * 119.98101 * 180.02562 * 22 21 20 39 39 H 1.07999 * 119.98637 * 179.97438 * 23 22 21 40 40 H 1.08008 * 120.01523 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0099 5 6 1.5488 2.1490 -1.2373 6 1 0.9271 3.0274 -1.1466 7 6 1.8933 1.6739 -2.4849 8 7 2.6501 0.6041 -2.5953 9 14 1.2839 2.5492 -4.0185 10 1 0.4553 3.7172 -3.6256 11 1 2.4459 3.0138 -4.8180 12 1 0.4665 1.6128 -4.8311 13 7 1.5394 2.1388 1.1928 14 6 2.4266 1.9179 2.3425 15 1 2.8628 0.9210 2.2785 16 6 3.5260 2.9486 2.3341 17 8 3.5659 3.7822 1.4602 18 8 4.4602 2.9414 3.2980 19 6 5.4885 3.9640 3.2269 20 6 1.6345 2.0386 3.6188 21 6 0.4242 2.7060 3.6208 22 6 -0.3024 2.8174 4.7913 23 6 0.1809 2.2619 5.9617 24 6 1.3906 1.5942 5.9621 25 6 2.1191 1.4814 4.7898 26 9 3.3020 0.8288 4.7890 27 1 -0.3634 0.5724 -0.8535 28 1 -0.3633 -1.0254 -0.0691 29 1 -0.3634 0.4529 0.9226 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8922 0.2696 -3.4730 33 1 1.4197 3.1243 1.0125 34 1 6.0348 3.8655 2.2888 35 1 5.0250 4.9494 3.2757 36 1 6.1774 3.8452 4.0632 37 1 0.0481 3.1445 2.7083 38 1 -1.2482 3.3387 4.7919 39 1 -0.3875 2.3498 6.8758 40 1 1.7677 1.1600 6.8763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567484459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:08 Heat of formation + Delta-G solvation = -101.689852 kcal Electronic energy + Delta-G solvation = -24760.035989 eV Core-core repulsion = 21068.554069 eV Total energy + Delta-G solvation = -3691.481920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.65833 -40.37241 -38.79625 -36.81197 -35.65343 -33.44568 -31.38672 -30.43038 -29.89886 -28.06971 -26.62666 -24.95935 -23.36262 -22.37463 -22.18942 -20.41593 -18.99085 -17.63882 -17.52258 -16.80398 -16.41726 -16.03385 -15.96009 -15.36577 -15.18335 -14.80121 -14.05059 -13.90956 -13.62439 -13.50982 -13.03619 -12.94305 -12.91101 -12.46609 -12.21635 -11.92936 -11.88574 -11.74957 -11.23555 -11.04483 -10.92105 -10.69169 -10.53432 -10.41869 -10.40575 -10.16911 -9.79663 -9.44932 -8.85043 -8.80310 -8.53909 -8.49398 -7.64599 -6.02472 -4.07058 1.22002 1.34110 2.54458 3.03428 3.29962 3.37844 3.41936 3.73702 4.36674 4.42434 4.70326 4.81413 4.96425 5.10411 5.21734 5.26096 5.30485 5.33061 5.44433 5.50269 5.64864 5.66982 5.95282 6.17760 6.21627 6.46526 6.49627 6.54297 6.62848 6.63915 6.80412 6.99097 7.12985 7.18451 7.40206 7.67135 7.70932 7.80204 8.05377 8.09882 8.25293 8.50388 8.97204 9.56738 11.04077 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.005369 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.197741 B = 5213.864500 C = 5934.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.005 0.995 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.648 5.648 14 C 0.138 3.862 15 H 0.120 0.880 16 C 0.435 3.565 17 O -0.490 6.490 18 O -0.358 6.358 19 C 0.034 3.966 20 C -0.105 4.105 21 C -0.056 4.056 22 C -0.139 4.139 23 C -0.094 4.094 24 C -0.164 4.164 25 C 0.115 3.885 26 F -0.132 7.132 27 H 0.057 0.943 28 H 0.015 0.985 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.260 0.740 33 H 0.347 0.653 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 3.085 16.384 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.280 5.280 14 C 0.025 3.975 15 H 0.138 0.862 16 C 0.274 3.726 17 O -0.376 6.376 18 O -0.273 6.273 19 C -0.060 4.060 20 C -0.106 4.106 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.183 4.183 25 C 0.095 3.905 26 F -0.110 7.110 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.587 2.724 16.113 16.418 hybrid contribution 0.940 0.939 -1.208 1.796 sum -0.647 3.664 14.904 15.362 Atomic orbital electron populations 1.21454 0.97266 0.97651 1.01392 1.21501 0.95291 0.97899 0.99760 1.19255 0.93309 0.91351 0.85252 0.97743 1.21097 1.31603 1.11792 0.89972 0.92088 1.24854 0.95005 0.94999 0.98951 1.69877 1.36583 1.22715 1.23656 0.86483 0.78521 0.79645 0.83026 1.19731 1.21182 1.21014 1.61205 1.43182 1.17789 1.05819 1.20259 0.87688 0.97329 0.92247 0.86239 1.25296 0.82597 0.85761 0.78899 1.90703 1.73821 1.37338 1.35692 1.86603 1.37351 1.53163 1.50209 1.23183 0.89471 0.90392 1.02978 1.19651 0.97276 1.01169 0.92538 1.21044 0.92322 0.95342 0.98687 1.21207 1.00567 1.01332 0.92583 1.20970 0.94971 0.96809 0.98472 1.21028 0.96582 1.03644 0.97019 1.17548 0.82764 0.95917 0.94256 1.91510 1.43924 1.78434 1.97149 0.92374 0.96598 0.93902 0.89110 0.97106 0.92975 0.83205 0.92059 0.92345 0.88622 0.83875 0.85475 0.85467 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 37.16 0.35 -2.26 16 2 C -0.11 -2.52 5.57 -26.73 -0.15 -2.67 16 3 C 0.22 5.29 2.00 -68.86 -0.14 5.15 16 4 H 0.00 0.14 7.69 -51.93 -0.40 -0.26 16 5 C -0.51 -13.54 7.29 -34.44 -0.25 -13.79 16 6 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.17 11.31 55.43 0.63 -24.55 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.65 -13.29 3.99 -103.39 -0.41 -13.71 16 14 C 0.14 2.57 2.24 -70.02 -0.16 2.41 16 15 H 0.12 2.32 7.00 -51.93 -0.36 1.96 16 16 C 0.43 8.34 7.03 36.01 0.25 8.60 16 17 O -0.49 -10.73 15.42 -18.75 -0.29 -11.02 16 18 O -0.36 -6.02 9.53 -39.26 -0.37 -6.39 16 19 C 0.03 0.45 10.56 101.05 1.07 1.52 16 20 C -0.10 -1.66 5.06 -104.56 -0.53 -2.18 16 21 C -0.06 -0.79 9.33 -39.60 -0.37 -1.16 16 22 C -0.14 -1.58 10.04 -39.58 -0.40 -1.98 16 23 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 24 C -0.16 -1.94 10.03 -39.52 -0.40 -2.33 16 25 C 0.11 1.69 6.98 -39.42 -0.27 1.41 16 26 F -0.13 -2.06 15.96 2.25 0.04 -2.02 16 27 H 0.06 1.35 7.10 -51.93 -0.37 0.98 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.87 7.71 -51.93 -0.40 0.47 16 30 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 31 H 0.01 0.23 7.54 -51.93 -0.39 -0.16 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.35 7.31 6.77 -39.29 -0.27 7.04 16 34 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 35 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.14 2.06 6.89 -52.48 -0.36 1.70 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -29.94 337.46 -7.19 -37.13 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.36 Total: 6.17 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.48 Total: -7.02 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.66 Total: -17.42 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.94 -7.19 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567484459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.559 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds