Wall clock time and date at job start Tue Mar 31 2020 08:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 H 1.09002 * 109.47252 * 179.44669 * 3 2 1 5 5 C 1.50706 * 109.47088 * 299.45022 * 3 2 1 6 6 H 1.07997 * 119.99950 * 120.00170 * 5 3 2 7 7 C 1.37879 * 119.99724 * 299.99462 * 5 3 2 8 8 N 1.31508 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99586 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47412 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46747 * 120.00281 * 9 7 5 12 12 H 1.48500 * 109.47157 * 240.00176 * 9 7 5 13 13 N 1.46906 * 109.46988 * 59.44692 * 3 2 1 14 14 C 1.46898 * 110.99805 * 86.09526 * 13 3 2 15 15 H 1.09002 * 109.47043 * 326.85241 * 14 13 3 16 16 C 1.50702 * 109.47226 * 86.85249 * 14 13 3 17 17 O 1.20829 * 119.99811 * 0.02562 * 16 14 13 18 18 O 1.34231 * 120.00027 * 179.97438 * 16 14 13 19 19 C 1.45196 * 116.99965 * 180.02562 * 18 16 14 20 20 C 1.50699 * 109.47056 * 206.85385 * 14 13 3 21 21 C 1.38214 * 120.01546 * 340.00023 * 20 14 13 22 22 C 1.38218 * 120.03083 * 180.02562 * 21 20 14 23 23 C 1.38268 * 120.04864 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02544 * 359.97438 * 23 22 21 25 25 C 1.38443 * 120.01128 * 160.02165 * 20 14 13 26 26 F 1.35096 * 120.02548 * 359.97438 * 25 20 14 27 27 H 1.09000 * 109.47448 * 56.14994 * 1 2 3 28 28 H 1.09003 * 109.46921 * 176.14734 * 1 2 3 29 29 H 1.09006 * 109.47116 * 296.14537 * 1 2 3 30 30 H 1.09003 * 109.47057 * 240.00055 * 2 1 3 31 31 H 1.09001 * 109.47291 * 120.00040 * 2 1 3 32 32 H 0.96998 * 120.00678 * 179.97438 * 8 7 5 33 33 H 1.00895 * 110.99824 * 210.05012 * 13 3 2 34 34 H 1.09004 * 109.47182 * 300.00123 * 19 18 16 35 35 H 1.09001 * 109.47112 * 60.00124 * 19 18 16 36 36 H 1.08999 * 109.47362 * 179.97438 * 19 18 16 37 37 H 1.08003 * 119.98259 * 359.74908 * 21 20 14 38 38 H 1.07998 * 119.98101 * 180.02562 * 22 21 20 39 39 H 1.07999 * 119.98637 * 179.97438 * 23 22 21 40 40 H 1.08008 * 120.01523 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0099 5 6 1.5488 2.1490 -1.2373 6 1 0.9271 3.0274 -1.1466 7 6 1.8933 1.6739 -2.4849 8 7 2.6501 0.6041 -2.5953 9 14 1.2839 2.5492 -4.0185 10 1 0.4553 3.7172 -3.6256 11 1 2.4459 3.0138 -4.8180 12 1 0.4665 1.6128 -4.8311 13 7 1.5394 2.1388 1.1928 14 6 2.4266 1.9179 2.3425 15 1 2.8628 0.9210 2.2785 16 6 3.5260 2.9486 2.3341 17 8 3.5659 3.7822 1.4602 18 8 4.4602 2.9414 3.2980 19 6 5.4885 3.9640 3.2269 20 6 1.6345 2.0386 3.6188 21 6 0.4242 2.7060 3.6208 22 6 -0.3024 2.8174 4.7913 23 6 0.1809 2.2619 5.9617 24 6 1.3906 1.5942 5.9621 25 6 2.1191 1.4814 4.7898 26 9 3.3020 0.8288 4.7890 27 1 -0.3634 0.5724 -0.8535 28 1 -0.3633 -1.0254 -0.0691 29 1 -0.3634 0.4529 0.9226 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.8922 0.2696 -3.4730 33 1 1.4197 3.1243 1.0125 34 1 6.0348 3.8655 2.2888 35 1 5.0250 4.9494 3.2757 36 1 6.1774 3.8452 4.0632 37 1 0.0481 3.1445 2.7083 38 1 -1.2482 3.3387 4.7919 39 1 -0.3875 2.3498 6.8758 40 1 1.7677 1.1600 6.8763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567484459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:07 Heat of formation + Delta-G solvation = -118.444911 kcal Electronic energy + Delta-G solvation = -24760.762543 eV Core-core repulsion = 21068.554069 eV Total energy + Delta-G solvation = -3692.208474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.78588 -41.84868 -39.88468 -38.37031 -37.30239 -35.10570 -33.22962 -31.42630 -31.38032 -29.33867 -28.31158 -26.53860 -25.21503 -23.49290 -23.34005 -21.89558 -20.79048 -19.12331 -18.88262 -18.23292 -17.79074 -17.61716 -17.15653 -16.78652 -16.48320 -16.34248 -15.55532 -15.31278 -15.08195 -14.90949 -14.56665 -14.42621 -14.12193 -13.90040 -13.77368 -13.39588 -13.22751 -12.94669 -12.87134 -12.71285 -12.50461 -12.34096 -12.17449 -11.95971 -11.88274 -11.83372 -11.60248 -11.35293 -10.85263 -10.59239 -9.83832 -9.56493 -9.41869 -8.12122 -6.23415 0.19418 0.36522 1.02531 1.39672 1.41574 1.52863 1.70411 2.40931 2.73928 3.16123 3.23773 3.42353 3.53790 3.87295 3.95004 4.06796 4.22407 4.23249 4.28216 4.48996 4.57473 4.58179 4.58796 4.75936 4.91729 4.97643 5.17273 5.21250 5.24776 5.27910 5.33686 5.49123 5.51396 5.58421 5.67838 5.76658 5.84132 6.03488 6.18972 6.26220 6.50709 6.64656 6.90383 7.43835 8.93879 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.005369 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.197741 B = 5213.864500 C = 5934.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.225 3.775 4 H -0.041 1.041 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.634 5.634 14 C 0.141 3.859 15 H 0.103 0.897 16 C 0.438 3.562 17 O -0.526 6.526 18 O -0.357 6.357 19 C 0.026 3.974 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.130 4.130 23 C -0.079 4.079 24 C -0.158 4.158 25 C 0.094 3.906 26 F -0.145 7.145 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.343 0.657 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 3.698 18.797 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.117 3.883 4 H -0.023 1.023 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.265 5.265 14 C 0.027 3.973 15 H 0.121 0.879 16 C 0.279 3.721 17 O -0.415 6.415 18 O -0.272 6.272 19 C -0.067 4.067 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.148 4.148 23 C -0.097 4.097 24 C -0.176 4.176 25 C 0.074 3.926 26 F -0.123 7.123 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.252 3.333 18.563 19.138 hybrid contribution 1.516 0.779 -1.808 2.485 sum -1.736 4.112 16.755 17.339 Atomic orbital electron populations 1.21308 0.95280 0.98661 1.01186 1.21361 0.96923 0.96958 0.98706 1.18982 0.90532 0.92317 0.86477 1.02316 1.21355 1.31375 1.11748 0.91059 0.92409 1.25609 0.95203 0.95660 1.01781 1.70014 1.37568 1.23915 1.24214 0.85532 0.77960 0.78807 0.79507 1.19042 1.21305 1.20248 1.61109 1.43498 1.17048 1.04823 1.20163 0.87920 0.96177 0.92990 0.87922 1.25362 0.82891 0.85255 0.78569 1.90676 1.74770 1.38977 1.37083 1.86579 1.37440 1.54170 1.49027 1.23541 0.89009 0.89796 1.04346 1.19469 0.98123 1.03763 0.91449 1.21088 0.92241 0.95860 0.99791 1.21560 1.01087 1.00505 0.91661 1.21468 0.94180 0.94430 0.99579 1.21397 0.96580 1.02961 0.96671 1.17822 0.83010 0.96744 0.95015 1.91472 1.44772 1.78830 1.97243 0.94234 0.94682 0.92528 0.92038 0.96206 0.92984 0.83704 0.92935 0.91804 0.84556 0.84927 0.82486 0.81260 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.10 -4.94 5.57 30.59 0.17 -4.77 16 3 C 0.22 11.58 2.00 44.17 0.09 11.66 16 4 H -0.04 -2.43 7.69 -2.39 -0.02 -2.44 16 5 C -0.52 -28.53 7.29 25.60 0.19 -28.35 16 6 H 0.06 3.16 7.60 -2.91 -0.02 3.14 16 7 C 0.02 0.92 5.30 84.66 0.45 1.37 16 8 N -0.92 -53.61 11.31 21.45 0.24 -53.37 16 9 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.63 -27.05 3.99 -481.01 -1.92 -28.96 16 14 C 0.14 5.44 2.24 43.42 0.10 5.54 16 15 H 0.10 4.25 7.00 -2.39 -0.02 4.24 16 16 C 0.44 17.50 7.03 71.24 0.50 18.00 16 17 O -0.53 -24.18 15.42 21.95 0.34 -23.84 16 18 O -0.36 -12.19 9.53 -51.43 -0.49 -12.68 16 19 C 0.03 0.69 10.56 113.37 1.20 1.88 16 20 C -0.13 -3.99 5.06 -19.82 -0.10 -4.09 16 21 C -0.07 -1.94 9.33 22.26 0.21 -1.74 16 22 C -0.13 -2.51 10.04 22.27 0.22 -2.28 16 23 C -0.08 -1.28 10.04 22.26 0.22 -1.06 16 24 C -0.16 -3.19 10.03 22.31 0.22 -2.97 16 25 C 0.09 2.65 6.98 22.38 0.16 2.80 16 26 F -0.14 -4.50 15.96 44.97 0.72 -3.78 16 27 H 0.04 1.83 7.10 -2.39 -0.02 1.82 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 2.26 7.71 -2.38 -0.02 2.24 16 30 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 31 H 0.02 0.90 7.54 -2.39 -0.02 0.88 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.34 15.09 6.77 -89.70 -0.61 14.49 16 34 H 0.05 1.46 8.13 -2.38 -0.02 1.44 16 35 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 36 H 0.14 2.39 8.14 -2.39 -0.02 2.38 16 37 H 0.13 3.81 6.89 -2.91 -0.02 3.79 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -67.72 337.46 5.68 -62.04 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.45 Total: 22.05 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.31 Total: -7.93 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.68 Total: -82.33 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.15 Total: -36.52 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.72 Total: -3.78 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -67.72 5.68 -62.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567484459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.402 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds