Wall clock time and date at job start Tue Mar 31 2020 08:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 H 1.08995 * 109.46941 * 306.28696 * 3 2 1 5 5 C 1.50694 * 109.47187 * 186.28170 * 3 2 1 6 6 H 1.08000 * 120.00334 * 245.14616 * 5 3 2 7 7 C 1.37879 * 119.99976 * 65.13956 * 5 3 2 8 8 N 1.31516 * 119.99617 * 7.70176 * 7 5 3 9 9 Si 1.86797 * 120.00263 * 187.42199 * 7 5 3 10 10 H 1.48498 * 109.47130 * 90.00240 * 9 7 5 11 11 H 1.48502 * 109.47044 * 210.00230 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00098 * 9 7 5 13 13 N 1.46900 * 109.46716 * 66.28557 * 3 2 1 14 14 C 1.46899 * 110.99885 * 203.51810 * 13 3 2 15 15 H 1.09004 * 109.46893 * 325.63977 * 14 13 3 16 16 C 1.50697 * 109.47576 * 85.64047 * 14 13 3 17 17 O 1.20827 * 119.99363 * 26.85309 * 16 14 13 18 18 O 1.34227 * 120.00556 * 206.86210 * 16 14 13 19 19 C 1.45198 * 117.00353 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47511 * 205.64159 * 14 13 3 21 21 C 1.38217 * 120.00813 * 339.99787 * 20 14 13 22 22 C 1.38231 * 120.02443 * 179.97438 * 21 20 14 23 23 C 1.38265 * 120.04739 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02775 * 359.97438 * 23 22 21 25 25 C 1.38438 * 120.01601 * 159.72238 * 20 14 13 26 26 F 1.35098 * 120.02436 * 359.97438 * 25 20 14 27 27 H 1.09005 * 109.47000 * 300.24862 * 1 2 3 28 28 H 1.09002 * 109.47149 * 60.24552 * 1 2 3 29 29 H 1.09001 * 109.47293 * 180.24610 * 1 2 3 30 30 H 1.08993 * 109.47400 * 240.00041 * 2 1 3 31 31 H 1.09003 * 109.47144 * 120.00168 * 2 1 3 32 32 H 0.97000 * 120.00417 * 5.41682 * 8 7 5 33 33 H 1.00895 * 111.00773 * 327.47051 * 13 3 2 34 34 H 1.08989 * 109.47543 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.47109 * 299.99766 * 19 18 16 36 36 H 1.09009 * 109.47115 * 59.99041 * 19 18 16 37 37 H 1.07994 * 119.99072 * 359.95954 * 21 20 14 38 38 H 1.07994 * 119.97502 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.98413 * 179.97438 * 23 22 21 40 40 H 1.08008 * 120.00975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5877 1.9878 -0.8283 5 6 3.5389 1.4454 -0.1555 6 1 4.1644 1.8083 0.6467 7 6 4.1119 0.9845 -1.3218 8 7 3.3532 0.6853 -2.3535 9 14 5.9663 0.7927 -1.4392 10 1 6.3512 -0.5736 -1.0029 11 1 6.3978 1.0036 -2.8444 12 1 6.6242 1.7956 -0.5636 13 7 1.6781 2.0898 1.2681 14 6 1.6301 3.5504 1.1187 15 1 2.3926 3.8681 0.4075 16 6 0.2705 3.9594 0.6136 17 8 -0.6933 3.2689 0.8465 18 8 0.1301 5.0906 -0.0951 19 6 -1.2084 5.4218 -0.5500 20 6 1.8864 4.2007 2.4538 21 6 1.7091 3.4794 3.6194 22 6 1.9446 4.0754 4.8442 23 6 2.3573 5.3936 4.9048 24 6 2.5353 6.1166 3.7408 25 6 2.3051 5.5189 2.5130 26 9 2.4847 6.2230 1.3741 27 1 -0.3633 0.5177 0.8878 28 1 -0.3633 0.5100 -0.8922 29 1 -0.3634 -1.0277 0.0044 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.4001 0.8623 -2.3223 33 1 0.8018 1.7333 1.6189 34 1 -1.1814 6.3574 -1.1083 35 1 -1.5810 4.6249 -1.1936 36 1 -1.8680 5.5317 0.3110 37 1 1.3861 2.4499 3.5734 38 1 1.8061 3.5110 5.7545 39 1 2.5406 5.8584 5.8623 40 1 2.8573 7.1465 3.7884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567484461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:13 Heat of formation + Delta-G solvation = -107.823611 kcal Electronic energy + Delta-G solvation = -24844.296470 eV Core-core repulsion = 21152.548570 eV Total energy + Delta-G solvation = -3691.747900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.65635 -40.47808 -38.82440 -36.97837 -35.89132 -33.56565 -31.73722 -30.44965 -30.06973 -28.11287 -26.53642 -25.09082 -23.02029 -22.39947 -22.25742 -20.22993 -19.94850 -17.67585 -17.43422 -16.95493 -16.52936 -16.29499 -16.05583 -15.55288 -15.27925 -14.67628 -14.28345 -13.97751 -13.73819 -13.54530 -13.16054 -13.01742 -12.71366 -12.50662 -12.30391 -12.22696 -12.07532 -11.82286 -11.39100 -11.14131 -10.95869 -10.72973 -10.63639 -10.57726 -10.48158 -10.10483 -10.04333 -9.95685 -8.85631 -8.81803 -8.51815 -8.39276 -7.70250 -6.34193 -4.06825 1.20186 1.33161 2.42352 2.97320 3.45619 3.48298 3.64624 3.72591 4.37820 4.50816 4.64243 4.81684 4.94015 5.06357 5.17142 5.19791 5.26969 5.32297 5.42330 5.49730 5.59596 5.74814 5.96541 5.99422 6.00581 6.15946 6.19217 6.21403 6.47326 6.50484 6.54275 6.66996 6.72274 6.79372 6.97837 7.04093 7.30730 7.70800 7.90944 7.99404 8.30484 8.59081 8.85759 9.62968 11.00457 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.006252 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.487686 B = 4477.562551 C = 5173.078786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.205 3.795 4 H -0.005 1.005 5 C -0.582 4.582 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 1.068 2.932 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.644 5.644 14 C 0.144 3.856 15 H 0.129 0.871 16 C 0.443 3.557 17 O -0.509 6.509 18 O -0.352 6.352 19 C 0.033 3.967 20 C -0.102 4.102 21 C -0.053 4.053 22 C -0.138 4.138 23 C -0.093 4.093 24 C -0.162 4.162 25 C 0.110 3.890 26 F -0.130 7.130 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.269 0.731 33 H 0.335 0.665 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 9.458 10.878 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.097 3.903 4 H 0.012 0.988 5 C -0.621 4.621 6 H 0.078 0.922 7 C -0.184 4.184 8 N -0.548 5.548 9 Si 0.897 3.103 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.277 5.277 14 C 0.031 3.969 15 H 0.147 0.853 16 C 0.284 3.716 17 O -0.397 6.397 18 O -0.267 6.267 19 C -0.061 4.061 20 C -0.104 4.104 21 C -0.072 4.072 22 C -0.156 4.156 23 C -0.112 4.112 24 C -0.181 4.181 25 C 0.090 3.910 26 F -0.109 7.109 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.093 8.741 10.110 13.978 hybrid contribution -2.266 0.735 0.156 2.388 sum -6.360 9.476 10.267 15.351 Atomic orbital electron populations 1.21892 0.98458 0.99994 1.00708 1.21795 0.92280 0.99807 1.02521 1.19427 0.96856 0.89971 0.84012 0.98765 1.21963 0.90352 1.46528 1.03241 0.92203 1.25773 1.06741 0.93786 0.92083 1.70765 1.07743 1.44947 1.31320 0.83559 0.74493 0.76553 0.75726 1.21429 1.21251 1.21401 1.61052 1.36021 0.98496 1.32110 1.20124 0.90881 0.91688 0.94206 0.85318 1.25384 0.93463 0.78223 0.74573 1.90590 1.41190 1.52597 1.55293 1.86633 1.33468 1.41496 1.65065 1.23217 0.81746 1.01482 0.99649 1.19581 1.03097 0.92294 0.95431 1.20997 0.95567 1.00255 0.90342 1.21206 1.01289 0.95222 0.97918 1.20978 0.98243 0.94351 0.97579 1.21041 1.04866 1.01184 0.91032 1.17596 1.01132 0.89780 0.82459 1.91530 1.92682 1.78077 1.48589 0.93425 0.93954 0.93951 0.90648 0.92616 0.92003 0.84318 0.88361 0.92081 0.92318 0.84087 0.85398 0.85335 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.76 37.16 0.36 -2.65 16 2 C -0.13 -2.87 5.23 -26.73 -0.14 -3.01 16 3 C 0.20 4.99 1.47 -68.86 -0.10 4.89 16 4 H -0.01 -0.14 6.98 -51.93 -0.36 -0.50 16 5 C -0.58 -15.84 8.35 -34.44 -0.29 -16.13 16 6 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 7 C 0.02 0.56 5.18 -17.82 -0.09 0.47 16 8 N -0.91 -26.72 12.79 55.43 0.71 -26.01 16 9 Si 1.07 25.04 29.91 -169.99 -5.08 19.96 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.64 -13.49 4.84 -103.40 -0.50 -13.99 16 14 C 0.14 2.86 2.25 -70.02 -0.16 2.71 16 15 H 0.13 2.86 7.37 -51.93 -0.38 2.48 16 16 C 0.44 8.60 6.82 36.00 0.25 8.84 16 17 O -0.51 -10.30 15.60 -18.75 -0.29 -10.59 16 18 O -0.35 -6.27 10.56 -39.25 -0.41 -6.69 16 19 C 0.03 0.45 10.56 101.05 1.07 1.52 16 20 C -0.10 -1.76 5.08 -104.55 -0.53 -2.29 16 21 C -0.05 -0.81 9.33 -39.59 -0.37 -1.18 16 22 C -0.14 -1.67 10.05 -39.57 -0.40 -2.07 16 23 C -0.09 -1.04 10.04 -39.59 -0.40 -1.44 16 24 C -0.16 -2.07 10.03 -39.52 -0.40 -2.46 16 25 C 0.11 1.76 7.24 -39.42 -0.29 1.47 16 26 F -0.13 -2.22 16.66 2.25 0.04 -2.19 16 27 H 0.05 0.90 6.48 -51.93 -0.34 0.56 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.91 6.37 -51.93 -0.33 1.58 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.27 7.91 6.31 -40.82 -0.26 7.65 16 33 H 0.34 6.68 4.97 -39.29 -0.20 6.49 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.06 0.74 8.13 -51.92 -0.42 0.31 16 37 H 0.14 2.12 6.86 -52.49 -0.36 1.76 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -30.67 339.20 -7.15 -37.82 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.24 Total: 7.91 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.48 Total: -11.32 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.21 Total: -40.01 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.71 Total: -17.28 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.67 -7.15 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567484461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.007 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds