Wall clock time and date at job start Tue Mar 31 2020 08:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 H 1.08995 * 109.46941 * 306.28696 * 3 2 1 5 5 C 1.50694 * 109.47187 * 186.28170 * 3 2 1 6 6 H 1.08000 * 120.00334 * 245.14616 * 5 3 2 7 7 C 1.37879 * 119.99976 * 65.13956 * 5 3 2 8 8 N 1.31516 * 119.99617 * 7.70176 * 7 5 3 9 9 Si 1.86797 * 120.00263 * 187.42199 * 7 5 3 10 10 H 1.48498 * 109.47130 * 90.00240 * 9 7 5 11 11 H 1.48502 * 109.47044 * 210.00230 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00098 * 9 7 5 13 13 N 1.46900 * 109.46716 * 66.28557 * 3 2 1 14 14 C 1.46899 * 110.99885 * 203.51810 * 13 3 2 15 15 H 1.09004 * 109.46893 * 325.63977 * 14 13 3 16 16 C 1.50697 * 109.47576 * 85.64047 * 14 13 3 17 17 O 1.20827 * 119.99363 * 26.85309 * 16 14 13 18 18 O 1.34227 * 120.00556 * 206.86210 * 16 14 13 19 19 C 1.45198 * 117.00353 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47511 * 205.64159 * 14 13 3 21 21 C 1.38217 * 120.00813 * 339.99787 * 20 14 13 22 22 C 1.38231 * 120.02443 * 179.97438 * 21 20 14 23 23 C 1.38265 * 120.04739 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02775 * 359.97438 * 23 22 21 25 25 C 1.38438 * 120.01601 * 159.72238 * 20 14 13 26 26 F 1.35098 * 120.02436 * 359.97438 * 25 20 14 27 27 H 1.09005 * 109.47000 * 300.24862 * 1 2 3 28 28 H 1.09002 * 109.47149 * 60.24552 * 1 2 3 29 29 H 1.09001 * 109.47293 * 180.24610 * 1 2 3 30 30 H 1.08993 * 109.47400 * 240.00041 * 2 1 3 31 31 H 1.09003 * 109.47144 * 120.00168 * 2 1 3 32 32 H 0.97000 * 120.00417 * 5.41682 * 8 7 5 33 33 H 1.00895 * 111.00773 * 327.47051 * 13 3 2 34 34 H 1.08989 * 109.47543 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.47109 * 299.99766 * 19 18 16 36 36 H 1.09009 * 109.47115 * 59.99041 * 19 18 16 37 37 H 1.07994 * 119.99072 * 359.95954 * 21 20 14 38 38 H 1.07994 * 119.97502 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.98413 * 179.97438 * 23 22 21 40 40 H 1.08008 * 120.00975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5877 1.9878 -0.8283 5 6 3.5389 1.4454 -0.1555 6 1 4.1644 1.8083 0.6467 7 6 4.1119 0.9845 -1.3218 8 7 3.3532 0.6853 -2.3535 9 14 5.9663 0.7927 -1.4392 10 1 6.3512 -0.5736 -1.0029 11 1 6.3978 1.0036 -2.8444 12 1 6.6242 1.7956 -0.5636 13 7 1.6781 2.0898 1.2681 14 6 1.6301 3.5504 1.1187 15 1 2.3926 3.8681 0.4075 16 6 0.2705 3.9594 0.6136 17 8 -0.6933 3.2689 0.8465 18 8 0.1301 5.0906 -0.0951 19 6 -1.2084 5.4218 -0.5500 20 6 1.8864 4.2007 2.4538 21 6 1.7091 3.4794 3.6194 22 6 1.9446 4.0754 4.8442 23 6 2.3573 5.3936 4.9048 24 6 2.5353 6.1166 3.7408 25 6 2.3051 5.5189 2.5130 26 9 2.4847 6.2230 1.3741 27 1 -0.3633 0.5177 0.8878 28 1 -0.3633 0.5100 -0.8922 29 1 -0.3634 -1.0277 0.0044 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.4001 0.8623 -2.3223 33 1 0.8018 1.7333 1.6189 34 1 -1.1814 6.3574 -1.1083 35 1 -1.5810 4.6249 -1.1936 36 1 -1.8680 5.5317 0.3110 37 1 1.3861 2.4499 3.5734 38 1 1.8061 3.5110 5.7545 39 1 2.5406 5.8584 5.8623 40 1 2.8573 7.1465 3.7884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567484461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:12 Heat of formation + Delta-G solvation = -125.517269 kcal Electronic energy + Delta-G solvation = -24845.063724 eV Core-core repulsion = 21152.548570 eV Total energy + Delta-G solvation = -3692.515154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.88935 -41.96429 -39.98031 -38.59340 -37.50228 -35.22280 -33.64084 -31.55122 -31.44752 -29.39728 -28.25029 -26.70168 -24.89989 -23.59145 -23.45971 -21.86040 -21.62098 -19.15526 -18.93702 -18.55810 -18.12258 -17.67750 -17.31337 -16.80279 -16.53247 -16.44582 -15.68034 -15.60828 -15.10789 -14.87466 -14.62363 -14.44697 -14.26901 -14.09303 -13.77013 -13.66027 -13.31759 -13.23790 -13.00221 -12.63717 -12.49191 -12.48492 -12.21316 -12.00867 -11.95613 -11.94710 -11.77237 -11.72438 -10.81414 -10.51077 -9.91815 -9.65913 -9.54090 -8.57522 -6.30593 0.09606 0.27872 0.90167 1.53670 1.60834 1.62639 1.79514 2.56124 2.65450 3.04266 3.17774 3.32490 3.50972 3.75040 3.89574 4.03594 4.14145 4.16413 4.21057 4.23663 4.28955 4.40358 4.43087 4.50273 4.51612 4.71601 4.90161 4.94351 5.03153 5.11380 5.12182 5.18139 5.20751 5.41408 5.42858 5.48427 5.81068 5.95595 5.98871 6.27116 6.46364 6.48178 6.69492 7.46532 8.76387 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.006252 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.487686 B = 4477.562551 C = 5173.078786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.211 3.789 4 H -0.041 1.041 5 C -0.589 4.589 6 H 0.049 0.951 7 C -0.027 4.027 8 N -0.933 5.933 9 Si 1.112 2.888 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.636 5.636 14 C 0.148 3.852 15 H 0.092 0.908 16 C 0.444 3.556 17 O -0.523 6.523 18 O -0.363 6.363 19 C 0.025 3.975 20 C -0.130 4.130 21 C -0.071 4.071 22 C -0.128 4.128 23 C -0.078 4.078 24 C -0.156 4.156 25 C 0.082 3.918 26 F -0.146 7.146 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.256 0.744 33 H 0.341 0.659 34 H 0.134 0.866 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 10.375 13.654 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.103 3.897 4 H -0.024 1.024 5 C -0.627 4.627 6 H 0.067 0.933 7 C -0.225 4.225 8 N -0.570 5.570 9 Si 0.935 3.065 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.269 5.269 14 C 0.034 3.966 15 H 0.110 0.890 16 C 0.285 3.715 17 O -0.412 6.412 18 O -0.278 6.278 19 C -0.068 4.068 20 C -0.132 4.132 21 C -0.089 4.089 22 C -0.146 4.146 23 C -0.095 4.095 24 C -0.174 4.174 25 C 0.063 3.937 26 F -0.125 7.125 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.180 0.820 39 H 0.192 0.808 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.960 9.676 12.903 16.607 hybrid contribution -2.376 0.566 -0.635 2.523 sum -6.335 10.242 12.268 17.191 Atomic orbital electron populations 1.21755 0.95821 1.01704 1.00464 1.21627 0.94584 0.98186 1.01258 1.19208 0.95333 0.90825 0.84351 1.02388 1.22204 0.91853 1.45880 1.02796 0.93293 1.27099 1.10356 0.93256 0.91797 1.70878 1.07187 1.46769 1.32178 0.82987 0.70007 0.77603 0.75908 1.19737 1.21253 1.19996 1.60944 1.36496 0.99452 1.30044 1.19934 0.90188 0.90887 0.95556 0.88975 1.25221 0.93150 0.78581 0.74508 1.90558 1.41485 1.53107 1.56032 1.86601 1.36030 1.40642 1.64536 1.23592 0.79909 1.02889 1.00388 1.19509 1.05924 0.93334 0.94440 1.21094 0.96614 1.00117 0.91052 1.21613 0.99342 0.95907 0.97694 1.21521 0.95547 0.93677 0.98775 1.21433 1.03489 1.02496 0.90023 1.17954 1.02787 0.89679 0.83309 1.91481 1.93020 1.78268 1.49728 0.92504 0.95254 0.91221 0.93440 0.92106 0.93425 0.83653 0.84831 0.92572 0.91171 0.84788 0.81961 0.80792 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 9.76 71.98 0.70 -4.84 16 2 C -0.12 -5.54 5.23 30.60 0.16 -5.38 16 3 C 0.21 10.78 1.47 44.17 0.06 10.85 16 4 H -0.04 -2.38 6.98 -2.39 -0.02 -2.40 16 5 C -0.59 -33.25 8.35 25.60 0.21 -33.04 16 6 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 7 C -0.03 -1.52 5.18 84.65 0.44 -1.08 16 8 N -0.93 -56.66 12.79 21.45 0.27 -56.38 16 9 Si 1.11 51.00 29.91 68.60 2.05 53.05 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.64 -27.73 4.84 -481.04 -2.33 -30.05 16 14 C 0.15 6.16 2.25 43.42 0.10 6.26 16 15 H 0.09 4.45 7.37 -2.38 -0.02 4.44 16 16 C 0.44 17.95 6.82 71.24 0.49 18.43 16 17 O -0.52 -21.66 15.60 21.96 0.34 -21.32 16 18 O -0.36 -13.37 10.56 -51.39 -0.54 -13.92 16 19 C 0.03 0.68 10.56 113.37 1.20 1.87 16 20 C -0.13 -4.55 5.08 -19.82 -0.10 -4.65 16 21 C -0.07 -2.07 9.33 22.26 0.21 -1.86 16 22 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 23 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16 24 C -0.16 -3.53 10.03 22.31 0.22 -3.31 16 25 C 0.08 2.61 7.24 22.37 0.16 2.78 16 26 F -0.15 -5.15 16.66 44.97 0.75 -4.40 16 27 H 0.06 2.13 6.48 -2.38 -0.02 2.11 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.49 6.37 -2.39 -0.02 2.47 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.26 15.85 6.31 -92.71 -0.59 15.27 16 33 H 0.34 13.96 4.97 -89.70 -0.45 13.51 16 34 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.06 1.55 8.13 -2.38 -0.02 1.53 16 36 H 0.07 1.71 8.13 -2.38 -0.02 1.69 16 37 H 0.13 4.00 6.86 -2.91 -0.02 3.98 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -70.13 339.20 5.64 -64.49 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.80 Total: 26.08 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.30 Total: -17.55 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -2.05 Total: -86.44 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.20 Total: -35.23 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.75 Total: -4.40 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -70.13 5.64 -64.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567484461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.031 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds