Wall clock time and date at job start Tue Mar 31 2020 08:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50708 * 109.46593 * 185.02667 * 14 13 3 16 16 C 1.38473 * 119.82510 * 90.00119 * 15 14 13 17 17 C 1.37830 * 120.22252 * 179.97438 * 16 15 14 18 18 C 1.39725 * 119.87607 * 0.02562 * 17 16 15 19 19 C 1.47558 * 120.17302 * 179.97438 * 18 17 16 20 20 O 1.21494 * 120.00005 * 179.97438 * 19 18 17 21 21 O 1.34734 * 120.00138 * 359.97438 * 19 18 17 22 22 C 1.45199 * 117.00052 * 180.02562 * 21 19 18 23 23 C 1.39880 * 119.65101 * 359.97438 * 18 17 16 24 24 F 1.35097 * 120.11077 * 180.02562 * 23 18 17 25 25 C 1.38209 * 119.81981 * 269.71954 * 15 14 13 26 26 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 29 29 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 30 30 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 32 32 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 33 33 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 34 34 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 35 35 H 1.07996 * 119.88999 * 359.97243 * 16 15 14 36 36 H 1.08003 * 120.06647 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47314 * 59.99455 * 22 21 19 38 38 H 1.08999 * 109.47629 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47189 * 299.99544 * 22 21 19 40 40 H 1.07999 * 119.94010 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5155 -3.5836 16 6 2.7995 3.7448 -3.8129 17 6 2.4814 4.4698 -4.9411 18 6 1.5551 3.9627 -5.8561 19 6 1.2093 4.7336 -7.0658 20 8 0.4038 4.2894 -7.8596 21 8 1.7867 5.9300 -7.2902 22 6 1.3985 6.6328 -8.5000 23 6 0.9574 2.7204 -5.6193 24 9 0.0610 2.2210 -6.4980 25 6 1.2916 2.0023 -4.4853 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0722 0.4283 1.9219 32 1 0.6931 1.8857 -1.4926 33 1 3.5861 1.9537 -2.0570 34 1 2.4645 0.6641 -2.5543 35 1 3.5151 4.1367 -3.1054 36 1 2.9471 5.4281 -5.1177 37 1 0.3257 6.8244 -8.4806 38 1 1.9353 7.5797 -8.5584 39 1 1.6429 6.0222 -9.3692 40 1 0.8348 1.0410 -4.3019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569351442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:30 Heat of formation + Delta-G solvation = -111.397626 kcal Electronic energy + Delta-G solvation = -23227.105076 eV Core-core repulsion = 19535.202195 eV Total energy + Delta-G solvation = -3691.902881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.99389 -40.63205 -39.12879 -36.86747 -36.55777 -33.57604 -31.69392 -30.80436 -30.19435 -28.13004 -26.58685 -24.79057 -23.65396 -22.96338 -22.43160 -20.95858 -19.60334 -18.27991 -17.48301 -17.16265 -16.65342 -16.59599 -16.15157 -15.61529 -15.13027 -14.84408 -14.42200 -14.11455 -13.70646 -13.64810 -13.55331 -13.27596 -13.14033 -12.70491 -12.59140 -12.31509 -12.18783 -11.76254 -11.61902 -11.35125 -11.14755 -11.05632 -10.79639 -10.63994 -10.34712 -10.17498 -10.09450 -9.94164 -9.21802 -8.87664 -8.69841 -8.29537 -7.49180 -6.34758 -4.05476 0.41340 1.05840 2.32288 2.39937 3.43692 3.44397 3.46217 3.63398 3.97058 4.37035 4.50355 4.57486 4.71856 4.83003 4.90909 4.99828 5.10638 5.21405 5.24596 5.36284 5.51979 5.61848 5.76165 5.91254 5.92733 5.97991 6.03153 6.07512 6.10797 6.24835 6.43792 6.59672 6.64122 6.88224 6.94591 7.15041 7.24653 7.50395 7.77043 8.15173 8.31646 8.56989 8.86859 9.62904 11.01459 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.003106 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.764362 B = 9013.023724 C = 9484.169844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.572 4.572 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.669 5.669 14 C 0.084 3.916 15 C 0.004 3.996 16 C -0.123 4.123 17 C -0.034 4.034 18 C -0.179 4.179 19 C 0.511 3.489 20 O -0.499 6.499 21 O -0.354 6.354 22 C 0.038 3.962 23 C 0.165 3.835 24 F -0.119 7.119 25 C -0.166 4.166 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.269 0.731 32 H 0.332 0.668 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 6.499 -17.612 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.096 3.904 4 H 0.047 0.953 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.300 5.300 14 C -0.045 4.045 15 C 0.003 3.997 16 C -0.141 4.141 17 C -0.052 4.052 18 C -0.181 4.181 19 C 0.356 3.644 20 O -0.388 6.388 21 O -0.271 6.271 22 C -0.056 4.056 23 C 0.145 3.855 24 F -0.097 7.097 25 C -0.186 4.186 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.213 7.035 -16.093 17.565 hybrid contribution -0.562 -1.109 -2.263 2.582 sum -0.349 5.926 -18.356 19.292 Atomic orbital electron populations 1.21601 0.96688 0.99257 1.01439 1.22285 0.96270 1.01337 0.99566 1.19385 0.95807 0.88440 0.86720 0.95310 1.21787 1.30180 1.18179 0.90952 0.92591 1.25712 0.95730 0.97036 1.00011 1.70825 1.24498 1.24403 1.35600 0.83567 0.75561 0.75629 0.75734 1.20974 1.21459 1.21512 1.60850 1.04884 1.62307 1.01911 1.21070 0.99218 0.95426 0.88835 1.20224 0.91445 0.93984 0.94015 1.21172 1.01514 0.94180 0.97278 1.21350 0.92977 0.99269 0.91618 1.19045 1.05991 0.95807 0.97241 1.20939 0.78302 0.79785 0.85403 1.90890 1.32236 1.69217 1.46413 1.86535 1.64388 1.31970 1.44189 1.23282 1.01595 0.96228 0.84513 1.17608 0.88534 0.91148 0.88223 1.91580 1.64327 1.86708 1.67066 1.21053 1.01587 1.02018 0.93894 0.94911 0.95250 0.90776 0.95984 0.91344 0.91937 0.84999 0.89873 0.94595 0.83983 0.83610 0.91780 0.87861 0.91835 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.38 37.16 0.35 -2.27 16 2 C -0.15 -3.30 5.45 -26.73 -0.15 -3.45 16 3 C 0.20 4.67 1.95 -68.86 -0.13 4.54 16 4 H 0.03 0.72 7.32 -51.93 -0.38 0.35 16 5 C -0.57 -14.93 7.18 -34.44 -0.25 -15.18 16 6 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 7 C 0.02 0.51 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -26.13 13.21 55.43 0.73 -25.40 16 9 Si 1.07 24.33 29.91 -169.99 -5.08 19.25 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -12.87 6.18 -109.22 -0.67 -13.55 16 14 C 0.08 1.30 5.60 -4.97 -0.03 1.27 16 15 C 0.00 0.06 5.44 -104.54 -0.57 -0.51 16 16 C -0.12 -1.49 9.67 -39.64 -0.38 -1.88 16 17 C -0.03 -0.38 9.62 -39.18 -0.38 -0.76 16 18 C -0.18 -2.35 5.88 -104.93 -0.62 -2.97 16 19 C 0.51 6.91 7.89 34.53 0.27 7.19 16 20 O -0.50 -8.00 15.13 -19.26 -0.29 -8.29 16 21 O -0.35 -3.89 9.82 -40.58 -0.40 -4.29 16 22 C 0.04 0.29 10.57 101.05 1.07 1.36 16 23 C 0.16 2.31 7.29 -38.94 -0.28 2.03 16 24 F -0.12 -1.83 15.55 2.25 0.04 -1.80 16 25 C -0.17 -2.19 9.66 -39.56 -0.38 -2.57 16 26 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.63 6.88 -51.93 -0.36 1.28 16 29 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 30 H 0.07 1.63 6.17 -51.93 -0.32 1.31 16 31 H 0.27 7.56 5.62 -40.82 -0.23 7.33 16 32 H 0.33 6.22 6.79 -39.29 -0.27 5.96 16 33 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 34 H 0.04 0.54 7.13 -51.93 -0.37 0.17 16 35 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 1.30 7.61 -52.48 -0.40 0.90 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -30.22 337.68 -7.36 -37.57 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.19 Total: 4.21 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.57 Total: -12.79 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.06 Total: -38.95 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.69 Total: -12.59 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.22 -7.36 -37.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569351442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.824 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds