Wall clock time and date at job start Tue Mar 31 2020 08:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50708 * 109.46593 * 185.02667 * 14 13 3 16 16 C 1.38473 * 119.82510 * 90.00119 * 15 14 13 17 17 C 1.37830 * 120.22252 * 179.97438 * 16 15 14 18 18 C 1.39725 * 119.87607 * 0.02562 * 17 16 15 19 19 C 1.47558 * 120.17302 * 179.97438 * 18 17 16 20 20 O 1.21494 * 120.00005 * 179.97438 * 19 18 17 21 21 O 1.34734 * 120.00138 * 359.97438 * 19 18 17 22 22 C 1.45199 * 117.00052 * 180.02562 * 21 19 18 23 23 C 1.39880 * 119.65101 * 359.97438 * 18 17 16 24 24 F 1.35097 * 120.11077 * 180.02562 * 23 18 17 25 25 C 1.38209 * 119.81981 * 269.71954 * 15 14 13 26 26 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 29 29 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 30 30 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 31 31 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 32 32 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 33 33 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 34 34 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 35 35 H 1.07996 * 119.88999 * 359.97243 * 16 15 14 36 36 H 1.08003 * 120.06647 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47314 * 59.99455 * 22 21 19 38 38 H 1.08999 * 109.47629 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47189 * 299.99544 * 22 21 19 40 40 H 1.07999 * 119.94010 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5155 -3.5836 16 6 2.7995 3.7448 -3.8129 17 6 2.4814 4.4698 -4.9411 18 6 1.5551 3.9627 -5.8561 19 6 1.2093 4.7336 -7.0658 20 8 0.4038 4.2894 -7.8596 21 8 1.7867 5.9300 -7.2902 22 6 1.3985 6.6328 -8.5000 23 6 0.9574 2.7204 -5.6193 24 9 0.0610 2.2210 -6.4980 25 6 1.2916 2.0023 -4.4853 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0722 0.4283 1.9219 32 1 0.6931 1.8857 -1.4926 33 1 3.5861 1.9537 -2.0570 34 1 2.4645 0.6641 -2.5543 35 1 3.5151 4.1367 -3.1054 36 1 2.9471 5.4281 -5.1177 37 1 0.3257 6.8244 -8.4806 38 1 1.9353 7.5797 -8.5584 39 1 1.6429 6.0222 -9.3692 40 1 0.8348 1.0410 -4.3019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569351442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:29 Heat of formation + Delta-G solvation = -128.640957 kcal Electronic energy + Delta-G solvation = -23227.852803 eV Core-core repulsion = 19535.202195 eV Total energy + Delta-G solvation = -3692.650608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.10316 -41.61488 -40.19477 -38.44742 -37.56620 -35.09695 -33.30692 -31.94285 -31.50685 -29.04695 -27.99806 -26.31056 -25.42049 -23.95544 -23.57728 -21.99228 -21.37150 -19.27228 -18.92512 -18.38922 -17.92469 -17.58980 -17.18398 -16.71839 -16.54116 -16.01121 -15.74962 -15.49719 -15.39367 -14.91988 -14.52855 -14.48728 -14.43965 -14.16459 -13.88240 -13.51241 -13.21161 -13.02317 -13.01656 -12.71963 -12.58253 -12.45445 -12.03323 -11.91590 -11.88197 -11.87896 -11.68612 -11.64557 -10.64254 -10.33622 -10.22869 -9.89018 -9.06184 -8.46023 -6.16973 -0.62393 0.07109 1.29274 1.52657 1.59022 1.64821 1.83619 2.43862 2.63548 2.93767 3.29794 3.35924 3.62366 3.63568 3.83350 4.01532 4.11033 4.27418 4.31068 4.33063 4.36783 4.45196 4.51343 4.57693 4.67817 4.73275 4.81208 4.92188 4.95796 5.00791 5.13233 5.17885 5.23703 5.40995 5.41891 5.57544 5.63990 5.97443 6.24858 6.52748 6.56585 6.71077 6.82478 7.58351 8.91044 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.003106 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.764362 B = 9013.023724 C = 9484.169844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.148 4.148 3 C 0.209 3.791 4 H 0.002 0.998 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.027 4.027 8 N -0.944 5.944 9 Si 1.105 2.895 10 H -0.290 1.290 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.089 3.911 15 C -0.004 4.004 16 C -0.120 4.120 17 C -0.019 4.019 18 C -0.184 4.184 19 C 0.512 3.488 20 O -0.531 6.531 21 O -0.350 6.350 22 C 0.029 3.971 23 C 0.146 3.854 24 F -0.131 7.131 25 C -0.161 4.161 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.061 0.939 38 H 0.139 0.861 39 H 0.063 0.937 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 7.752 -18.554 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.188 4.188 3 C 0.100 3.900 4 H 0.020 0.980 5 C -0.613 4.613 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.583 5.583 9 Si 0.929 3.071 10 H -0.216 1.216 11 H -0.201 1.201 12 H -0.199 1.199 13 N -0.305 5.305 14 C -0.040 4.040 15 C -0.005 4.005 16 C -0.138 4.138 17 C -0.037 4.037 18 C -0.187 4.187 19 C 0.358 3.642 20 O -0.422 6.422 21 O -0.266 6.266 22 C -0.064 4.064 23 C 0.127 3.873 24 F -0.110 7.110 25 C -0.180 4.180 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.098 8.310 -17.063 18.979 hybrid contribution -0.484 -1.421 -2.089 2.572 sum -0.385 6.890 -19.152 20.357 Atomic orbital electron populations 1.21515 0.95300 1.00161 1.01378 1.22149 0.97417 1.00042 0.99154 1.19128 0.93888 0.89282 0.87672 0.97994 1.22063 1.29338 1.17687 0.92205 0.93610 1.26851 0.95769 0.97102 1.02775 1.70918 1.26144 1.25861 1.35368 0.83056 0.75514 0.75480 0.73030 1.21611 1.20139 1.19905 1.60675 1.05698 1.62232 1.01876 1.21020 0.98298 0.96298 0.88388 1.20038 0.92446 0.94592 0.93411 1.21363 1.01246 0.93578 0.97657 1.21578 0.91800 0.99910 0.90370 1.19236 1.06211 0.95605 0.97608 1.21041 0.77775 0.80318 0.85054 1.90874 1.33754 1.70123 1.47490 1.86525 1.63771 1.30818 1.45511 1.23635 1.02193 0.97294 0.83264 1.17799 0.89082 0.91901 0.88543 1.91545 1.64912 1.86966 1.67553 1.21083 1.01228 1.02288 0.93430 0.92784 0.93400 0.93417 0.93747 0.94306 0.92838 0.84598 0.90004 0.93799 0.82752 0.80819 0.91983 0.84272 0.91785 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.38 71.98 0.68 -4.15 16 2 C -0.15 -6.23 5.45 30.59 0.17 -6.07 16 3 C 0.21 9.55 1.95 44.17 0.09 9.64 16 4 H 0.00 0.11 7.32 -2.39 -0.02 0.09 16 5 C -0.57 -30.03 7.18 25.60 0.18 -29.84 16 6 H 0.05 2.44 7.82 -2.91 -0.02 2.42 16 7 C -0.03 -1.45 5.29 84.65 0.45 -1.01 16 8 N -0.94 -54.78 13.21 21.44 0.28 -54.50 16 9 Si 1.11 48.89 29.91 68.60 2.05 50.94 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 N -0.67 -25.21 6.18 -499.45 -3.09 -28.30 16 14 C 0.09 2.63 5.60 85.56 0.48 3.11 16 15 C 0.00 -0.10 5.44 -19.81 -0.11 -0.21 16 16 C -0.12 -2.63 9.67 22.23 0.22 -2.42 16 17 C -0.02 -0.37 9.62 22.53 0.22 -0.16 16 18 C -0.18 -4.56 5.88 -20.06 -0.12 -4.68 16 19 C 0.51 13.20 7.89 70.28 0.55 13.76 16 20 O -0.53 -16.81 15.13 19.85 0.30 -16.51 16 21 O -0.35 -6.92 9.82 -56.44 -0.55 -7.47 16 22 C 0.03 0.38 10.57 113.37 1.20 1.58 16 23 C 0.15 3.96 7.29 22.69 0.17 4.13 16 24 F -0.13 -4.03 15.55 44.97 0.70 -3.33 16 25 C -0.16 -4.01 9.66 22.28 0.22 -3.80 16 26 H 0.05 1.81 6.68 -2.39 -0.02 1.79 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 2.07 6.88 -2.39 -0.02 2.05 16 29 H 0.04 1.65 7.13 -2.39 -0.02 1.63 16 30 H 0.04 1.86 6.17 -2.39 -0.01 1.85 16 31 H 0.26 15.07 5.62 -92.71 -0.52 14.55 16 32 H 0.34 12.06 6.79 -89.69 -0.61 11.45 16 33 H 0.08 2.44 7.89 -2.39 -0.02 2.43 16 34 H 0.04 1.24 7.13 -2.39 -0.02 1.22 16 35 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.17 2.46 7.61 -2.91 -0.02 2.44 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -65.49 337.68 4.78 -60.71 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.70 Total: 18.57 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.38 Total: -20.11 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -2.80 Total: -82.79 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.25 Total: -23.99 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.70 Total: -3.33 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Total: -65.49 4.78 -60.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569351442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.927 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds