Wall clock time and date at job start Tue Mar 31 2020 08:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.09002 * 109.47388 * 185.55515 * 3 2 1 5 5 C 1.50700 * 109.47316 * 305.54840 * 3 2 1 6 6 H 1.07998 * 119.99826 * 116.63251 * 5 3 2 7 7 C 1.37885 * 120.00162 * 296.63954 * 5 3 2 8 8 N 1.31506 * 119.99649 * 352.48108 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 172.48496 * 7 5 3 10 10 H 1.48494 * 109.46952 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.46846 * 299.99669 * 9 7 5 12 12 H 1.48498 * 109.46943 * 59.99580 * 9 7 5 13 13 N 1.46899 * 109.47128 * 65.55113 * 3 2 1 14 14 C 1.46895 * 110.99861 * 87.05334 * 13 3 2 15 15 C 1.53005 * 109.47157 * 184.39912 * 14 13 3 16 16 O 1.42900 * 109.47240 * 64.99239 * 15 14 13 17 17 C 1.35998 * 117.00058 * 179.97438 * 16 15 14 18 18 C 1.38712 * 119.97599 * 359.73198 * 17 16 15 19 19 C 1.38094 * 120.02641 * 179.76104 * 18 17 16 20 20 C 1.38918 * 119.97103 * 0.53482 * 19 18 17 21 21 S 1.76200 * 120.02202 * 179.70278 * 20 19 18 22 22 C 1.81404 * 103.00054 * 0.02562 * 21 20 19 23 23 C 1.38924 * 119.95370 * 359.71758 * 20 19 18 24 24 C 1.38092 * 119.97197 * 0.02562 * 23 20 19 25 25 H 1.09002 * 109.47270 * 303.33189 * 1 2 3 26 26 H 1.09000 * 109.47515 * 63.32970 * 1 2 3 27 27 H 1.09001 * 109.47549 * 183.33796 * 1 2 3 28 28 H 1.08999 * 109.46892 * 240.00321 * 2 1 3 29 29 H 1.08998 * 109.47679 * 119.99705 * 2 1 3 30 30 H 0.97001 * 120.00561 * 355.70746 * 8 7 5 31 31 H 1.00899 * 110.99776 * 323.09317 * 13 3 2 32 32 H 1.09001 * 109.47196 * 304.39100 * 14 13 3 33 33 H 1.08998 * 109.47417 * 64.39636 * 14 13 3 34 34 H 1.08995 * 109.47200 * 184.99884 * 15 14 13 35 35 H 1.09003 * 109.46354 * 304.99816 * 15 14 13 36 36 H 1.08005 * 119.98684 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.01031 * 180.25680 * 19 18 17 38 38 H 1.08998 * 109.46651 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46783 * 300.00116 * 22 21 20 40 40 H 1.08997 * 109.47048 * 60.00175 * 22 21 20 41 41 H 1.07991 * 120.01513 * 179.97438 * 23 20 19 42 42 H 1.08000 * 119.98373 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1254 1.4442 -0.0995 5 6 1.4286 2.1915 -1.1560 6 1 0.7765 3.0322 -0.9704 7 6 1.7015 1.8034 -2.4506 8 7 2.6071 0.8785 -2.6826 9 14 0.7850 2.5914 -3.8749 10 1 1.2593 2.0046 -5.1539 11 1 -0.6711 2.3419 -3.7251 12 1 1.0389 4.0546 -3.8778 13 7 1.6627 2.0952 1.2608 14 6 2.6717 1.8541 2.3008 15 6 2.1932 2.4542 3.6245 16 8 1.0229 1.7628 4.0655 17 6 0.4665 2.1751 5.2359 18 6 1.0401 3.2195 5.9460 19 6 0.4732 3.6422 7.1322 20 6 -0.6656 3.0137 7.6198 21 16 -1.3856 3.5468 9.1371 22 6 -0.2965 4.9035 9.6510 23 6 -1.2363 1.9643 6.9105 24 6 -0.6707 1.5469 5.7219 25 1 -0.3634 0.5647 0.8586 26 1 -0.3634 0.4613 -0.9183 27 1 -0.3634 -1.0259 0.0598 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1271 0.5139 -1.9494 31 1 0.7497 1.7926 1.5655 32 1 2.8202 0.7810 2.4211 33 1 3.6126 2.3208 2.0094 34 1 2.9784 2.3540 4.3737 35 1 1.9597 3.5093 3.4816 36 1 1.9281 3.7052 5.5689 37 1 0.9177 4.4582 7.6827 38 1 -0.6516 5.3165 10.5952 39 1 0.7182 4.5264 9.7785 40 1 -0.3017 5.6823 8.8885 41 1 -2.1214 1.4748 7.2888 42 1 -1.1140 0.7308 5.1705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571937490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:53 Heat of formation + Delta-G solvation = -22.153375 kcal Electronic energy + Delta-G solvation = -21035.891989 eV Core-core repulsion = 17914.072206 eV Total energy + Delta-G solvation = -3121.819784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16870 -37.76270 -36.55648 -33.13427 -31.60174 -31.00691 -30.14491 -29.19256 -28.13921 -25.37195 -23.54168 -23.25564 -22.73943 -21.24476 -19.56694 -18.49923 -17.51761 -16.80388 -16.05969 -15.93243 -15.22767 -14.94880 -14.63816 -14.17060 -13.99289 -13.94212 -13.72804 -13.58989 -13.16684 -12.99262 -12.93254 -12.41449 -12.26849 -12.17906 -11.83388 -11.38306 -11.15754 -10.98774 -10.83997 -10.74677 -10.53307 -10.18357 -10.06585 -10.02979 -9.80942 -9.32164 -9.15784 -8.62689 -8.24757 -7.42069 -7.33868 -6.28071 -3.96474 1.10223 1.11457 1.27795 2.14534 3.21867 3.47729 3.48605 3.50113 3.67449 4.52709 4.55328 4.64844 4.68202 4.68872 4.91340 5.00133 5.10811 5.21917 5.30009 5.36123 5.39575 5.41128 5.63176 5.72957 5.82046 6.03716 6.07643 6.08567 6.16670 6.18592 6.20812 6.37271 6.50748 6.75191 7.00041 7.05927 7.28790 7.34391 7.37791 7.91904 8.29513 8.45372 8.67175 8.94744 9.70874 11.07601 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002604 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.157658 B =10748.850625 C =10753.198905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.150 4.150 3 C 0.203 3.797 4 H 0.022 0.978 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.060 3.940 15 C 0.061 3.939 16 O -0.308 6.308 17 C 0.141 3.859 18 C -0.192 4.192 19 C -0.091 4.091 20 C -0.130 4.130 21 S -0.128 6.128 22 C -0.142 4.142 23 C -0.058 4.058 24 C -0.137 4.137 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.336 0.664 32 H 0.030 0.970 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 4.511 22.898 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.190 4.190 3 C 0.095 3.905 4 H 0.040 0.960 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.309 5.309 14 C -0.071 4.071 15 C -0.015 4.015 16 O -0.222 6.222 17 C 0.093 3.907 18 C -0.213 4.213 19 C -0.114 4.114 20 C -0.242 4.242 21 S 0.112 5.888 22 C -0.311 4.311 23 C -0.081 4.081 24 C -0.157 4.157 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.151 0.849 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.028 4.602 21.599 22.649 hybrid contribution 1.406 -0.233 1.308 1.935 sum -3.622 4.369 22.907 23.600 Atomic orbital electron populations 1.21533 0.96633 0.98273 1.01986 1.22186 0.96345 1.01056 0.99388 1.19327 0.95359 0.88715 0.87104 0.95969 1.21828 1.31385 1.16572 0.91037 0.92690 1.25702 0.97008 0.96108 0.99723 1.70803 1.21276 1.27301 1.35935 0.83613 0.75667 0.75578 0.75858 1.21012 1.21511 1.21565 1.60874 1.04104 1.62752 1.03166 1.22007 0.97276 0.98319 0.89454 1.23079 0.84980 0.97152 0.96244 1.86141 1.42938 1.57918 1.35166 1.19079 0.92865 0.92958 0.85814 1.21194 1.02891 0.99907 0.97281 1.20915 0.94897 0.99389 0.96202 1.21464 1.00568 1.02293 0.99882 1.85363 1.39833 1.41297 1.22317 1.23639 1.02498 0.99571 1.05398 1.20538 0.99120 0.94985 0.93479 1.20419 0.95785 1.02469 0.97021 0.94399 0.91334 0.95563 0.91386 0.96167 0.92109 0.84498 0.95231 0.89728 0.92223 0.91031 0.84989 0.85805 0.87532 0.89866 0.89784 0.84922 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.38 37.15 0.35 -2.38 16 2 C -0.15 -3.47 5.46 -26.73 -0.15 -3.62 16 3 C 0.20 4.99 1.97 -68.86 -0.14 4.85 16 4 H 0.02 0.59 7.24 -51.93 -0.38 0.22 16 5 C -0.57 -15.62 7.33 -34.44 -0.25 -15.88 16 6 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 7 C 0.02 0.50 5.25 -17.82 -0.09 0.41 16 8 N -0.92 -26.96 12.90 55.43 0.72 -26.24 16 9 Si 1.06 25.11 29.91 -169.99 -5.08 20.03 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.33 6.27 -107.95 -0.68 -15.00 16 14 C 0.06 1.02 5.90 -3.82 -0.02 1.00 16 15 C 0.06 0.85 5.07 37.16 0.19 1.04 16 16 O -0.31 -4.70 9.60 -19.73 -0.19 -4.89 16 17 C 0.14 1.91 6.69 -39.23 -0.26 1.64 16 18 C -0.19 -2.27 9.03 -39.46 -0.36 -2.62 16 19 C -0.09 -0.96 9.36 -39.38 -0.37 -1.33 16 20 C -0.13 -1.43 6.11 -39.08 -0.24 -1.67 16 21 S -0.13 -1.19 22.56 -107.50 -2.43 -3.61 16 22 C -0.14 -0.86 9.15 101.05 0.92 0.06 16 23 C -0.06 -0.65 9.79 -39.38 -0.39 -1.04 16 24 C -0.14 -1.69 9.98 -39.46 -0.39 -2.08 16 25 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 26 H 0.07 1.61 7.20 -51.93 -0.37 1.24 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.73 6.26 -51.93 -0.32 1.40 16 29 H 0.02 0.43 7.45 -51.93 -0.39 0.04 16 30 H 0.27 7.84 6.02 -40.82 -0.25 7.59 16 31 H 0.34 7.05 5.98 -39.29 -0.23 6.81 16 32 H 0.03 0.52 7.43 -51.93 -0.39 0.14 16 33 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 34 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 35 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 36 H 0.13 1.36 6.29 -52.48 -0.33 1.03 16 37 H 0.12 1.03 5.87 -52.49 -0.31 0.72 16 38 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.08 0.46 7.74 -51.93 -0.40 0.05 16 40 H 0.08 0.48 7.75 -51.93 -0.40 0.08 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -30.13 348.22 -9.82 -39.95 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.21 Total: 6.14 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.19 Total: -21.62 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.04 Total: -41.24 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.43 Total: -3.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.13 -9.82 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571937490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.794 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds