Wall clock time and date at job start Tue Mar 31 2020 08:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.09002 * 109.47388 * 185.55515 * 3 2 1 5 5 C 1.50700 * 109.47316 * 305.54840 * 3 2 1 6 6 H 1.07998 * 119.99826 * 116.63251 * 5 3 2 7 7 C 1.37885 * 120.00162 * 296.63954 * 5 3 2 8 8 N 1.31506 * 119.99649 * 352.48108 * 7 5 3 9 9 Si 1.86803 * 119.99983 * 172.48496 * 7 5 3 10 10 H 1.48494 * 109.46952 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.46846 * 299.99669 * 9 7 5 12 12 H 1.48498 * 109.46943 * 59.99580 * 9 7 5 13 13 N 1.46899 * 109.47128 * 65.55113 * 3 2 1 14 14 C 1.46895 * 110.99861 * 87.05334 * 13 3 2 15 15 C 1.53005 * 109.47157 * 184.39912 * 14 13 3 16 16 O 1.42900 * 109.47240 * 64.99239 * 15 14 13 17 17 C 1.35998 * 117.00058 * 179.97438 * 16 15 14 18 18 C 1.38712 * 119.97599 * 359.73198 * 17 16 15 19 19 C 1.38094 * 120.02641 * 179.76104 * 18 17 16 20 20 C 1.38918 * 119.97103 * 0.53482 * 19 18 17 21 21 S 1.76200 * 120.02202 * 179.70278 * 20 19 18 22 22 C 1.81404 * 103.00054 * 0.02562 * 21 20 19 23 23 C 1.38924 * 119.95370 * 359.71758 * 20 19 18 24 24 C 1.38092 * 119.97197 * 0.02562 * 23 20 19 25 25 H 1.09002 * 109.47270 * 303.33189 * 1 2 3 26 26 H 1.09000 * 109.47515 * 63.32970 * 1 2 3 27 27 H 1.09001 * 109.47549 * 183.33796 * 1 2 3 28 28 H 1.08999 * 109.46892 * 240.00321 * 2 1 3 29 29 H 1.08998 * 109.47679 * 119.99705 * 2 1 3 30 30 H 0.97001 * 120.00561 * 355.70746 * 8 7 5 31 31 H 1.00899 * 110.99776 * 323.09317 * 13 3 2 32 32 H 1.09001 * 109.47196 * 304.39100 * 14 13 3 33 33 H 1.08998 * 109.47417 * 64.39636 * 14 13 3 34 34 H 1.08995 * 109.47200 * 184.99884 * 15 14 13 35 35 H 1.09003 * 109.46354 * 304.99816 * 15 14 13 36 36 H 1.08005 * 119.98684 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.01031 * 180.25680 * 19 18 17 38 38 H 1.08998 * 109.46651 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46783 * 300.00116 * 22 21 20 40 40 H 1.08997 * 109.47048 * 60.00175 * 22 21 20 41 41 H 1.07991 * 120.01513 * 179.97438 * 23 20 19 42 42 H 1.08000 * 119.98373 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1254 1.4442 -0.0995 5 6 1.4286 2.1915 -1.1560 6 1 0.7765 3.0322 -0.9704 7 6 1.7015 1.8034 -2.4506 8 7 2.6071 0.8785 -2.6826 9 14 0.7850 2.5914 -3.8749 10 1 1.2593 2.0046 -5.1539 11 1 -0.6711 2.3419 -3.7251 12 1 1.0389 4.0546 -3.8778 13 7 1.6627 2.0952 1.2608 14 6 2.6717 1.8541 2.3008 15 6 2.1932 2.4542 3.6245 16 8 1.0229 1.7628 4.0655 17 6 0.4665 2.1751 5.2359 18 6 1.0401 3.2195 5.9460 19 6 0.4732 3.6422 7.1322 20 6 -0.6656 3.0137 7.6198 21 16 -1.3856 3.5468 9.1371 22 6 -0.2965 4.9035 9.6510 23 6 -1.2363 1.9643 6.9105 24 6 -0.6707 1.5469 5.7219 25 1 -0.3634 0.5647 0.8586 26 1 -0.3634 0.4613 -0.9183 27 1 -0.3634 -1.0259 0.0598 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1271 0.5139 -1.9494 31 1 0.7497 1.7926 1.5655 32 1 2.8202 0.7810 2.4211 33 1 3.6126 2.3208 2.0094 34 1 2.9784 2.3540 4.3737 35 1 1.9597 3.5093 3.4816 36 1 1.9281 3.7052 5.5689 37 1 0.9177 4.4582 7.6827 38 1 -0.6516 5.3165 10.5952 39 1 0.7182 4.5264 9.7785 40 1 -0.3017 5.6823 8.8885 41 1 -2.1214 1.4748 7.2888 42 1 -1.1140 0.7308 5.1705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571937490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:52 Heat of formation + Delta-G solvation = -39.253504 kcal Electronic energy + Delta-G solvation = -21036.633507 eV Core-core repulsion = 17914.072206 eV Total energy + Delta-G solvation = -3122.561301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13787 -38.98619 -38.10653 -34.88976 -32.94168 -32.31812 -31.12531 -29.98033 -29.36425 -27.24353 -25.47094 -24.38143 -23.64271 -22.42203 -21.45307 -19.43799 -18.78245 -18.36019 -17.30017 -17.01964 -16.28546 -15.97177 -15.80764 -15.61497 -15.45306 -15.23563 -14.71510 -14.68604 -14.58286 -14.24370 -14.00638 -13.60574 -13.52053 -13.41551 -13.10031 -12.87493 -12.65812 -12.59081 -12.18155 -12.05092 -11.93745 -11.83860 -11.82626 -11.67518 -11.21594 -10.65319 -10.37103 -10.17117 -10.03299 -9.07990 -8.49709 -8.20022 -6.18921 0.21967 0.25153 0.60695 1.50070 1.56122 1.62743 1.81917 2.19005 2.60827 2.62036 3.25767 3.45765 3.69117 3.82562 3.98188 4.15145 4.20784 4.26717 4.27633 4.29625 4.32696 4.36302 4.37410 4.50284 4.53798 4.70959 4.73801 4.84452 4.91940 4.94381 5.02735 5.11348 5.21001 5.21602 5.27587 5.39797 5.52128 5.62877 5.97583 6.21669 6.38558 6.54487 6.72612 6.80061 7.55732 8.85911 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002604 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.157658 B =10748.850625 C =10753.198905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 C 0.206 3.794 4 H -0.004 1.004 5 C -0.575 4.575 6 H 0.043 0.957 7 C -0.027 4.027 8 N -0.939 5.939 9 Si 1.106 2.894 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.059 3.941 15 C 0.070 3.930 16 O -0.330 6.330 17 C 0.115 3.885 18 C -0.195 4.195 19 C -0.093 4.093 20 C -0.135 4.135 21 S -0.148 6.148 22 C -0.137 4.137 23 C -0.065 4.065 24 C -0.148 4.148 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.257 0.743 31 H 0.337 0.663 32 H 0.025 0.975 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 5.683 24.777 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.182 4.182 3 C 0.097 3.903 4 H 0.014 0.986 5 C -0.614 4.614 6 H 0.061 0.939 7 C -0.225 4.225 8 N -0.577 5.577 9 Si 0.929 3.071 10 H -0.213 1.213 11 H -0.199 1.199 12 H -0.201 1.201 13 N -0.314 5.314 14 C -0.071 4.071 15 C -0.005 4.005 16 O -0.244 6.244 17 C 0.068 3.932 18 C -0.215 4.215 19 C -0.116 4.116 20 C -0.247 4.247 21 S 0.092 5.908 22 C -0.305 4.305 23 C -0.088 4.088 24 C -0.168 4.168 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.164 0.836 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.638 5.782 23.520 24.868 hybrid contribution 1.590 -0.555 0.895 1.907 sum -4.048 5.227 24.415 25.294 Atomic orbital electron populations 1.21436 0.95184 0.99776 1.01224 1.22050 0.97542 0.99863 0.98755 1.19121 0.93461 0.89542 0.88162 0.98633 1.22073 1.30804 1.16267 0.92265 0.93859 1.26944 0.97073 0.96000 1.02485 1.70910 1.22505 1.28742 1.35553 0.83060 0.75448 0.75489 0.73054 1.21309 1.19851 1.20120 1.60748 1.05105 1.62442 1.03136 1.22066 0.96519 0.98459 0.90049 1.22942 0.85805 0.96623 0.95123 1.86078 1.43442 1.58600 1.36316 1.19290 0.93757 0.94352 0.85830 1.21392 1.03267 0.99377 0.97476 1.21218 0.94666 0.99796 0.95923 1.21730 1.00544 1.01933 1.00468 1.85456 1.41023 1.42940 1.21349 1.23766 1.02175 0.98199 1.06370 1.20753 0.99584 0.95273 0.93169 1.20570 0.95864 1.02758 0.97615 0.93187 0.93699 0.93184 0.94087 0.94573 0.93258 0.84386 0.95633 0.89466 0.89240 0.90826 0.83650 0.83351 0.85642 0.88905 0.89075 0.83569 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.38 71.98 0.68 -4.37 16 2 C -0.14 -6.64 5.46 30.59 0.17 -6.47 16 3 C 0.21 10.29 1.97 44.17 0.09 10.37 16 4 H 0.00 -0.23 7.24 -2.39 -0.02 -0.25 16 5 C -0.58 -31.96 7.33 25.60 0.19 -31.77 16 6 H 0.04 2.46 7.83 -2.91 -0.02 2.44 16 7 C -0.03 -1.53 5.25 84.66 0.44 -1.08 16 8 N -0.94 -56.34 12.90 21.45 0.28 -56.07 16 9 Si 1.11 50.57 29.91 68.60 2.05 52.62 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.68 -28.86 6.27 -495.45 -3.11 -31.96 16 14 C 0.06 1.99 5.90 86.31 0.51 2.50 16 15 C 0.07 1.87 5.07 71.98 0.36 2.23 16 16 O -0.33 -9.79 9.60 -93.53 -0.90 -10.69 16 17 C 0.12 3.00 6.69 22.50 0.15 3.15 16 18 C -0.19 -4.24 9.03 22.35 0.20 -4.03 16 19 C -0.09 -1.76 9.36 22.40 0.21 -1.55 16 20 C -0.13 -2.73 6.11 22.60 0.14 -2.59 16 21 S -0.15 -2.45 22.56 -56.49 -1.27 -3.72 16 22 C -0.14 -1.24 9.15 113.37 1.04 -0.20 16 23 C -0.06 -1.38 9.79 22.40 0.22 -1.16 16 24 C -0.15 -3.58 9.98 22.35 0.22 -3.36 16 25 H 0.05 1.97 6.34 -2.39 -0.02 1.96 16 26 H 0.04 2.10 7.20 -2.39 -0.02 2.08 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 2.12 6.26 -2.39 -0.01 2.11 16 29 H 0.04 1.54 7.45 -2.39 -0.02 1.52 16 30 H 0.26 15.56 6.02 -92.71 -0.56 15.01 16 31 H 0.34 14.02 5.98 -89.69 -0.54 13.49 16 32 H 0.03 0.89 7.43 -2.39 -0.02 0.87 16 33 H 0.09 2.88 8.13 -2.39 -0.02 2.86 16 34 H 0.09 1.85 7.65 -2.39 -0.02 1.83 16 35 H 0.07 1.93 7.67 -2.39 -0.02 1.91 16 36 H 0.15 2.65 6.29 -2.91 -0.02 2.63 16 37 H 0.15 1.99 5.87 -2.91 -0.02 1.97 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.70 7.74 -2.39 -0.02 0.68 16 40 H 0.09 0.74 7.75 -2.39 -0.02 0.72 16 41 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -65.21 348.22 2.35 -62.85 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.69 Total: 25.30 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.61 Total: -38.34 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.83 Total: -88.03 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.90 Total: -10.69 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.62 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -1.27 Total: -3.72 kcal Total: -65.21 2.35 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571937490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.599 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds