Wall clock time and date at job start Tue Mar 31 2020 08:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47398 * 2 1 4 4 H 1.09001 * 109.46688 * 306.14984 * 3 2 1 5 5 C 1.50701 * 109.47102 * 186.14942 * 3 2 1 6 6 H 1.07997 * 119.99911 * 240.70712 * 5 3 2 7 7 C 1.37877 * 119.99967 * 60.71517 * 5 3 2 8 8 N 1.31513 * 119.99802 * 196.50443 * 7 5 3 9 9 Si 1.86794 * 120.00300 * 16.49266 * 7 5 3 10 10 H 1.48505 * 109.46931 * 95.38343 * 9 7 5 11 11 H 1.48496 * 109.47740 * 215.38246 * 9 7 5 12 12 H 1.48502 * 109.47342 * 335.39058 * 9 7 5 13 13 N 1.46898 * 109.47346 * 66.14797 * 3 2 1 14 14 C 1.46900 * 111.00138 * 203.33659 * 13 3 2 15 15 H 1.08998 * 109.47114 * 325.37623 * 14 13 3 16 16 C 1.50699 * 109.46829 * 85.37787 * 14 13 3 17 17 O 1.20823 * 120.00093 * 25.06200 * 16 14 13 18 18 O 1.34231 * 119.99797 * 205.05896 * 16 14 13 19 19 C 1.45197 * 117.00069 * 180.02562 * 18 16 14 20 20 C 1.50702 * 109.46990 * 205.37659 * 14 13 3 21 21 C 1.38250 * 119.97417 * 319.72719 * 20 14 13 22 22 C 1.38197 * 120.02272 * 179.72631 * 21 20 14 23 23 C 1.38461 * 119.97378 * 0.52576 * 22 21 20 24 24 F 1.35103 * 120.02718 * 179.72619 * 23 22 21 25 25 C 1.38458 * 119.94967 * 359.74771 * 23 22 21 26 26 C 1.38191 * 119.97354 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.47342 * 302.51165 * 1 2 3 28 28 H 1.09004 * 109.47146 * 62.51283 * 1 2 3 29 29 H 1.09000 * 109.47595 * 182.50916 * 1 2 3 30 30 H 1.08997 * 109.47301 * 239.99510 * 2 1 3 31 31 H 1.09008 * 109.47123 * 119.99385 * 2 1 3 32 32 H 0.97000 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99772 * 79.38299 * 13 3 2 34 34 H 1.08996 * 109.47217 * 180.02562 * 19 18 16 35 35 H 1.09003 * 109.47065 * 299.99906 * 19 18 16 36 36 H 1.09004 * 109.46973 * 60.00147 * 19 18 16 37 37 H 1.07998 * 119.98350 * 359.97438 * 21 20 14 38 38 H 1.08001 * 120.01283 * 180.25345 * 22 21 20 39 39 H 1.08002 * 120.01141 * 179.97438 * 25 23 22 40 40 H 1.08010 * 119.98640 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5895 1.9870 -0.8298 5 6 3.5393 1.4451 -0.1522 6 1 4.1597 1.8743 0.6206 7 6 4.1189 0.8998 -1.2781 8 7 5.4002 0.6036 -1.2803 9 14 3.0842 0.5814 -2.8004 10 1 3.2105 1.7295 -3.7338 11 1 3.5576 -0.6560 -3.4709 12 1 1.6616 0.4179 -2.4067 13 7 1.6753 2.0909 1.2667 14 6 1.6319 3.5516 1.1170 15 1 2.4009 3.8676 0.4121 16 6 0.2774 3.9636 0.6008 17 8 -0.6842 3.2591 0.7979 18 8 0.1391 5.1134 -0.0779 19 6 -1.1947 5.4470 -0.5447 20 6 1.8788 4.2011 2.4543 21 6 1.3129 3.6665 3.5968 22 6 1.5432 4.2580 4.8243 23 6 2.3322 5.3927 4.9083 24 9 2.5535 5.9750 6.1072 25 6 2.8938 5.9304 3.7627 26 6 2.6659 5.3345 2.5369 27 1 -0.3634 0.5523 0.8666 28 1 -0.3633 0.4743 -0.9117 29 1 -0.3634 -1.0267 0.0450 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8079 0.2197 -2.0723 33 1 2.3072 1.8217 2.0057 34 1 -1.1661 6.3979 -1.0767 35 1 -1.5505 4.6658 -1.2165 36 1 -1.8686 5.5276 0.3082 37 1 0.6939 2.7840 3.5303 38 1 1.1044 3.8378 5.7173 39 1 3.5090 6.8158 3.8270 40 1 3.1042 5.7536 1.6431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573217797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:16 Heat of formation + Delta-G solvation = -101.089018 kcal Electronic energy + Delta-G solvation = -24352.186427 eV Core-core repulsion = 20660.730561 eV Total energy + Delta-G solvation = -3691.455866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.89512 -40.36101 -38.93521 -36.72491 -35.76700 -33.26906 -31.95225 -31.13118 -29.90941 -28.10646 -26.99147 -25.17580 -23.02929 -22.47350 -22.16165 -20.22330 -19.75520 -17.78154 -17.45054 -16.93532 -16.36573 -16.31030 -16.12332 -15.57244 -15.26168 -14.91908 -14.32322 -14.03560 -13.57411 -13.44789 -13.24905 -13.01155 -12.89327 -12.87072 -12.56863 -12.24705 -11.90157 -11.77437 -11.62352 -11.25892 -11.05013 -10.90499 -10.80951 -10.54046 -10.36678 -10.08065 -9.82448 -9.58656 -9.29567 -9.06929 -8.54885 -8.54052 -7.62995 -6.23578 -4.20697 1.08348 1.27795 2.61017 2.94565 3.21668 3.32451 3.37493 3.63261 4.26263 4.33144 4.67354 4.78816 4.89338 5.02258 5.10658 5.19763 5.22304 5.28224 5.37338 5.46244 5.61467 5.81014 5.93761 6.02626 6.10607 6.14550 6.18168 6.25924 6.36580 6.54296 6.63016 6.66364 6.82547 6.89513 7.02833 7.11745 7.31563 7.46009 7.75510 8.13983 8.21728 8.33596 8.81324 9.43161 10.88770 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.005403 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.539617 B = 5180.632242 C = 5942.443506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.190 3.810 4 H 0.025 0.975 5 C -0.560 4.560 6 H 0.074 0.926 7 C 0.084 3.916 8 N -0.884 5.884 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.247 1.247 13 N -0.656 5.656 14 C 0.145 3.855 15 H 0.097 0.903 16 C 0.468 3.532 17 O -0.482 6.482 18 O -0.364 6.364 19 C 0.037 3.963 20 C -0.095 4.095 21 C -0.063 4.063 22 C -0.158 4.158 23 C 0.097 3.903 24 F -0.144 7.144 25 C -0.157 4.157 26 C -0.068 4.068 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.352 0.648 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 9.830 6.631 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.081 3.919 4 H 0.043 0.957 5 C -0.598 4.598 6 H 0.092 0.908 7 C -0.120 4.120 8 N -0.520 5.520 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.171 1.171 13 N -0.290 5.290 14 C 0.033 3.967 15 H 0.114 0.886 16 C 0.308 3.692 17 O -0.366 6.366 18 O -0.281 6.281 19 C -0.057 4.057 20 C -0.096 4.096 21 C -0.081 4.081 22 C -0.177 4.177 23 C 0.078 3.922 24 F -0.122 7.122 25 C -0.176 4.176 26 C -0.087 4.087 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.787 9.466 6.518 15.095 hybrid contribution 0.510 0.064 -0.919 1.052 sum -9.277 9.530 5.600 14.430 Atomic orbital electron populations 1.21746 0.97515 0.99118 1.01677 1.21788 0.93702 0.98303 1.00747 1.19580 0.94437 0.91313 0.86580 0.95715 1.21620 0.90278 1.41343 1.06556 0.90782 1.24900 0.94680 0.93759 0.98694 1.70001 1.11876 1.41008 1.29148 0.87286 0.82671 0.77966 0.83590 1.20801 1.21138 1.17115 1.60459 1.56917 1.01336 1.10261 1.19718 0.91148 0.92093 0.93771 0.88580 1.23862 0.92159 0.78210 0.74947 1.90594 1.40747 1.51776 1.53518 1.86518 1.33940 1.40757 1.66901 1.23163 0.81795 1.01267 0.99491 1.19677 0.99290 0.96472 0.94160 1.21078 0.97229 0.99331 0.90450 1.21137 1.01046 0.96106 0.99409 1.17784 0.99675 0.94156 0.80633 1.91481 1.93364 1.83655 1.43750 1.21068 1.02848 1.02203 0.91494 1.20999 0.96099 0.94045 0.97516 0.91342 0.94687 0.95123 0.92976 0.92682 0.92571 0.82708 0.88553 0.92132 0.92296 0.83601 0.84736 0.84684 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.84 37.15 0.37 -2.41 16 2 C -0.11 -2.30 4.79 -26.74 -0.13 -2.43 16 3 C 0.19 4.21 1.33 -68.87 -0.09 4.12 16 4 H 0.02 0.59 6.51 -51.93 -0.34 0.25 16 5 C -0.56 -14.47 8.66 -34.44 -0.30 -14.76 16 6 H 0.07 2.06 8.00 -52.49 -0.42 1.64 16 7 C 0.08 2.29 5.30 -17.82 -0.09 2.20 16 8 N -0.88 -25.72 13.96 55.43 0.77 -24.94 16 9 Si 0.86 20.50 25.68 -169.99 -4.37 16.13 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.25 -5.66 5.42 56.52 0.31 -5.35 16 13 N -0.66 -12.43 4.52 -103.40 -0.47 -12.89 16 14 C 0.14 2.49 2.53 -70.02 -0.18 2.32 16 15 H 0.10 1.77 7.43 -51.93 -0.39 1.38 16 16 C 0.47 8.21 6.81 36.01 0.25 8.45 16 17 O -0.48 -9.28 16.37 -18.75 -0.31 -9.59 16 18 O -0.36 -5.68 10.57 -39.26 -0.41 -6.09 16 19 C 0.04 0.44 10.56 101.05 1.07 1.51 16 20 C -0.10 -1.41 4.70 -104.61 -0.49 -1.90 16 21 C -0.06 -0.86 9.00 -39.59 -0.36 -1.22 16 22 C -0.16 -1.97 10.03 -39.51 -0.40 -2.37 16 23 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 24 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 25 C -0.16 -1.91 10.03 -39.52 -0.40 -2.31 16 26 C -0.07 -0.89 9.67 -39.60 -0.38 -1.28 16 27 H 0.07 1.33 7.72 -51.93 -0.40 0.93 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.18 4.59 -51.93 -0.24 0.94 16 31 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.35 6.55 7.71 -39.29 -0.30 6.25 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.15 2.02 7.72 -52.49 -0.41 1.61 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.14 1.63 8.04 -52.48 -0.42 1.20 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -29.66 339.51 -6.57 -36.24 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.52 Total: 6.97 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.42 Total: -9.12 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.31 Total: -37.84 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.72 Total: -15.68 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.37 Total: 16.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.66 -6.57 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.854 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds