Wall clock time and date at job start Tue Mar 31 2020 08:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47398 * 2 1 4 4 H 1.09001 * 109.46688 * 306.14984 * 3 2 1 5 5 C 1.50701 * 109.47102 * 186.14942 * 3 2 1 6 6 H 1.07997 * 119.99911 * 240.70712 * 5 3 2 7 7 C 1.37877 * 119.99967 * 60.71517 * 5 3 2 8 8 N 1.31513 * 119.99802 * 196.50443 * 7 5 3 9 9 Si 1.86794 * 120.00300 * 16.49266 * 7 5 3 10 10 H 1.48505 * 109.46931 * 95.38343 * 9 7 5 11 11 H 1.48496 * 109.47740 * 215.38246 * 9 7 5 12 12 H 1.48502 * 109.47342 * 335.39058 * 9 7 5 13 13 N 1.46898 * 109.47346 * 66.14797 * 3 2 1 14 14 C 1.46900 * 111.00138 * 203.33659 * 13 3 2 15 15 H 1.08998 * 109.47114 * 325.37623 * 14 13 3 16 16 C 1.50699 * 109.46829 * 85.37787 * 14 13 3 17 17 O 1.20823 * 120.00093 * 25.06200 * 16 14 13 18 18 O 1.34231 * 119.99797 * 205.05896 * 16 14 13 19 19 C 1.45197 * 117.00069 * 180.02562 * 18 16 14 20 20 C 1.50702 * 109.46990 * 205.37659 * 14 13 3 21 21 C 1.38250 * 119.97417 * 319.72719 * 20 14 13 22 22 C 1.38197 * 120.02272 * 179.72631 * 21 20 14 23 23 C 1.38461 * 119.97378 * 0.52576 * 22 21 20 24 24 F 1.35103 * 120.02718 * 179.72619 * 23 22 21 25 25 C 1.38458 * 119.94967 * 359.74771 * 23 22 21 26 26 C 1.38191 * 119.97354 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.47342 * 302.51165 * 1 2 3 28 28 H 1.09004 * 109.47146 * 62.51283 * 1 2 3 29 29 H 1.09000 * 109.47595 * 182.50916 * 1 2 3 30 30 H 1.08997 * 109.47301 * 239.99510 * 2 1 3 31 31 H 1.09008 * 109.47123 * 119.99385 * 2 1 3 32 32 H 0.97000 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99772 * 79.38299 * 13 3 2 34 34 H 1.08996 * 109.47217 * 180.02562 * 19 18 16 35 35 H 1.09003 * 109.47065 * 299.99906 * 19 18 16 36 36 H 1.09004 * 109.46973 * 60.00147 * 19 18 16 37 37 H 1.07998 * 119.98350 * 359.97438 * 21 20 14 38 38 H 1.08001 * 120.01283 * 180.25345 * 22 21 20 39 39 H 1.08002 * 120.01141 * 179.97438 * 25 23 22 40 40 H 1.08010 * 119.98640 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5895 1.9870 -0.8298 5 6 3.5393 1.4451 -0.1522 6 1 4.1597 1.8743 0.6206 7 6 4.1189 0.8998 -1.2781 8 7 5.4002 0.6036 -1.2803 9 14 3.0842 0.5814 -2.8004 10 1 3.2105 1.7295 -3.7338 11 1 3.5576 -0.6560 -3.4709 12 1 1.6616 0.4179 -2.4067 13 7 1.6753 2.0909 1.2667 14 6 1.6319 3.5516 1.1170 15 1 2.4009 3.8676 0.4121 16 6 0.2774 3.9636 0.6008 17 8 -0.6842 3.2591 0.7979 18 8 0.1391 5.1134 -0.0779 19 6 -1.1947 5.4470 -0.5447 20 6 1.8788 4.2011 2.4543 21 6 1.3129 3.6665 3.5968 22 6 1.5432 4.2580 4.8243 23 6 2.3322 5.3927 4.9083 24 9 2.5535 5.9750 6.1072 25 6 2.8938 5.9304 3.7627 26 6 2.6659 5.3345 2.5369 27 1 -0.3634 0.5523 0.8666 28 1 -0.3633 0.4743 -0.9117 29 1 -0.3634 -1.0267 0.0450 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8079 0.2197 -2.0723 33 1 2.3072 1.8217 2.0057 34 1 -1.1661 6.3979 -1.0767 35 1 -1.5505 4.6658 -1.2165 36 1 -1.8686 5.5276 0.3082 37 1 0.6939 2.7840 3.5303 38 1 1.1044 3.8378 5.7173 39 1 3.5090 6.8158 3.8270 40 1 3.1042 5.7536 1.6431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573217797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:15 Heat of formation + Delta-G solvation = -118.185182 kcal Electronic energy + Delta-G solvation = -24352.927772 eV Core-core repulsion = 20660.730561 eV Total energy + Delta-G solvation = -3692.197211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90806 -41.65775 -40.05261 -38.22557 -37.19076 -34.85311 -33.84628 -32.15103 -31.26757 -29.26148 -28.63482 -26.55502 -24.35503 -23.94368 -23.32078 -21.67044 -21.31242 -19.26098 -18.66168 -18.53045 -17.68179 -17.60068 -17.28091 -16.68347 -16.58422 -16.46188 -15.71440 -15.41570 -14.93228 -14.73509 -14.56141 -14.44349 -14.24487 -14.14613 -13.96941 -13.56917 -13.37590 -13.26252 -12.97138 -12.78192 -12.62474 -12.55945 -12.07286 -11.97590 -11.72514 -11.61600 -11.54722 -11.35298 -11.12185 -10.62084 -10.07421 -9.63609 -9.26648 -8.34606 -6.33866 0.01543 0.27030 1.25695 1.30687 1.37696 1.46602 1.74139 2.32722 2.57075 3.00541 3.24452 3.38768 3.62612 3.82590 3.94296 4.01184 4.27599 4.33350 4.34745 4.36271 4.42179 4.50325 4.56581 4.69826 4.72152 4.89014 4.91957 4.99394 5.12650 5.18120 5.21869 5.30342 5.38427 5.41627 5.51118 5.52856 5.70086 5.87241 6.00177 6.27960 6.51479 6.74688 6.87258 7.33155 8.80976 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.005403 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.539617 B = 5180.632242 C = 5942.443506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C 0.198 3.802 4 H 0.015 0.985 5 C -0.551 4.551 6 H 0.044 0.956 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.913 3.087 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.231 1.231 13 N -0.648 5.648 14 C 0.145 3.855 15 H 0.080 0.920 16 C 0.470 3.530 17 O -0.503 6.503 18 O -0.369 6.369 19 C 0.029 3.971 20 C -0.110 4.110 21 C -0.068 4.068 22 C -0.154 4.154 23 C 0.092 3.908 24 F -0.143 7.143 25 C -0.151 4.151 26 C -0.073 4.073 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.265 0.735 33 H 0.353 0.647 34 H 0.132 0.868 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 10.698 6.919 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.147 4.147 3 C 0.089 3.911 4 H 0.033 0.967 5 C -0.590 4.590 6 H 0.062 0.938 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.154 1.154 13 N -0.281 5.281 14 C 0.033 3.967 15 H 0.098 0.902 16 C 0.311 3.689 17 O -0.390 6.390 18 O -0.286 6.286 19 C -0.064 4.064 20 C -0.111 4.111 21 C -0.086 4.086 22 C -0.172 4.172 23 C 0.072 3.928 24 F -0.122 7.122 25 C -0.170 4.170 26 C -0.091 4.091 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.341 10.359 6.814 16.803 hybrid contribution 0.999 -0.096 -0.921 1.362 sum -10.342 10.263 5.893 15.716 Atomic orbital electron populations 1.21616 0.95452 1.00546 1.01260 1.21739 0.95461 0.97241 1.00225 1.19390 0.91728 0.92250 0.87778 0.96707 1.21868 0.92112 1.39660 1.05327 0.93766 1.25615 0.95537 0.94024 1.01459 1.70112 1.13704 1.43072 1.30033 0.86405 0.82028 0.77682 0.80135 1.20645 1.21120 1.15428 1.60403 1.56397 1.02652 1.08640 1.19673 0.90943 0.90992 0.95072 0.90186 1.23793 0.91792 0.78546 0.74741 1.90576 1.41303 1.52584 1.54497 1.86496 1.36121 1.39639 1.66297 1.23519 0.80151 1.02801 0.99942 1.19591 1.00850 0.97485 0.93157 1.21048 0.97458 0.99453 0.90688 1.21313 1.00540 0.95784 0.99599 1.17928 0.99723 0.94282 0.80819 1.91486 1.93350 1.83630 1.43732 1.21299 1.02380 1.02602 0.90714 1.21132 0.95832 0.93676 0.98498 0.91542 0.95227 0.92794 0.94125 0.92634 0.92558 0.82661 0.84975 0.92560 0.91667 0.83962 0.82647 0.82290 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.84 71.98 0.71 -4.12 16 2 C -0.11 -4.55 4.79 30.59 0.15 -4.40 16 3 C 0.20 8.77 1.33 44.17 0.06 8.83 16 4 H 0.02 0.70 6.51 -2.39 -0.02 0.69 16 5 C -0.55 -28.99 8.66 25.60 0.22 -28.77 16 6 H 0.04 2.54 8.00 -2.91 -0.02 2.52 16 7 C 0.03 1.87 5.30 84.65 0.45 2.32 16 8 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 9 Si 0.91 42.34 25.68 68.60 1.76 44.10 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.23 -10.04 5.42 99.48 0.54 -9.50 16 13 N -0.65 -24.54 4.52 -481.04 -2.18 -26.72 16 14 C 0.15 5.00 2.53 43.42 0.11 5.11 16 15 H 0.08 3.01 7.43 -2.39 -0.02 2.99 16 16 C 0.47 16.19 6.81 71.24 0.49 16.67 16 17 O -0.50 -18.96 16.37 21.97 0.36 -18.60 16 18 O -0.37 -11.06 10.57 -51.42 -0.54 -11.60 16 19 C 0.03 0.63 10.56 113.37 1.20 1.83 16 20 C -0.11 -3.19 4.70 -19.86 -0.09 -3.29 16 21 C -0.07 -1.81 9.00 22.26 0.20 -1.61 16 22 C -0.15 -3.57 10.03 22.31 0.22 -3.35 16 23 C 0.09 2.17 7.30 22.38 0.16 2.33 16 24 F -0.14 -3.40 17.27 44.97 0.78 -2.62 16 25 C -0.15 -3.39 10.03 22.31 0.22 -3.16 16 26 C -0.07 -1.84 9.67 22.26 0.22 -1.63 16 27 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.79 4.59 -2.39 -0.01 1.77 16 31 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.35 13.26 7.71 -89.69 -0.69 12.57 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 36 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 37 H 0.14 3.86 7.72 -2.91 -0.02 3.84 16 38 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.15 3.35 8.04 -2.91 -0.02 3.33 16 Total: -1.00 -63.42 339.51 4.98 -58.44 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.20 Total: 25.26 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.31 Total: -13.22 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.88 Total: -81.75 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.18 Total: -30.20 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.76 Total: 44.10 kcal Total: -63.42 4.98 -58.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.744 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds