Wall clock time and date at job start Tue Mar 31 2020 08:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09000 * 109.47311 * 178.95334 * 3 2 1 5 5 C 1.50698 * 109.46986 * 298.94677 * 3 2 1 6 6 H 1.08005 * 119.99871 * 119.99995 * 5 3 2 7 7 C 1.37872 * 120.00720 * 300.00205 * 5 3 2 8 8 N 1.31513 * 120.00498 * 179.97438 * 7 5 3 9 9 Si 1.86811 * 119.99484 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47177 * 90.00135 * 9 7 5 11 11 H 1.48505 * 109.46774 * 209.99882 * 9 7 5 12 12 H 1.48500 * 109.46914 * 329.99884 * 9 7 5 13 13 N 1.46900 * 109.47297 * 58.95139 * 3 2 1 14 14 C 1.46896 * 111.00228 * 86.01892 * 13 3 2 15 15 H 1.08999 * 109.47028 * 326.81022 * 14 13 3 16 16 C 1.50697 * 109.47000 * 86.80506 * 14 13 3 17 17 O 1.20834 * 120.00190 * 359.97438 * 16 14 13 18 18 O 1.34232 * 120.00386 * 180.02562 * 16 14 13 19 19 C 1.45195 * 117.00304 * 179.97438 * 18 16 14 20 20 C 1.50695 * 109.47407 * 206.80246 * 14 13 3 21 21 C 1.38245 * 119.97419 * 319.73055 * 20 14 13 22 22 C 1.38203 * 120.02161 * 179.76409 * 21 20 14 23 23 C 1.38452 * 119.97636 * 0.50328 * 22 21 20 24 24 F 1.35102 * 120.02563 * 179.76759 * 23 22 21 25 25 C 1.38462 * 119.94888 * 359.75078 * 23 22 21 26 26 C 1.38199 * 119.97425 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.47113 * 296.09151 * 1 2 3 28 28 H 1.08994 * 109.47296 * 56.09601 * 1 2 3 29 29 H 1.09003 * 109.47333 * 176.09686 * 1 2 3 30 30 H 1.09000 * 109.47543 * 120.00042 * 2 1 3 31 31 H 1.09002 * 109.46982 * 239.99991 * 2 1 3 32 32 H 0.97006 * 119.99982 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99989 * 209.97955 * 13 3 2 34 34 H 1.09006 * 109.47128 * 60.00511 * 19 18 16 35 35 H 1.09004 * 109.47096 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47811 * 300.00236 * 19 18 16 37 37 H 1.07993 * 119.98660 * 0.02562 * 21 20 14 38 38 H 1.08001 * 120.00879 * 180.25452 * 22 21 20 39 39 H 1.08000 * 120.01244 * 179.97438 * 25 23 22 40 40 H 1.07996 * 119.98377 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0188 5 6 1.5591 2.1453 -1.2433 6 1 0.9365 3.0240 -1.1604 7 6 1.9136 1.6667 -2.4867 8 7 1.4935 2.2797 -3.5717 9 14 2.9909 0.1472 -2.6302 10 1 2.1337 -1.0642 -2.6828 11 1 3.8041 0.2324 -3.8699 12 1 3.8913 0.0658 -1.4521 13 7 1.5297 2.1423 1.1865 14 6 2.4065 1.9232 2.3446 15 1 2.8416 0.9255 2.2873 16 6 3.5077 2.9521 2.3427 17 8 3.5572 3.7824 1.4662 18 8 4.4341 2.9456 3.3140 19 6 5.4653 3.9656 3.2483 20 6 1.6037 2.0493 3.6136 21 6 0.6423 3.0361 3.7275 22 6 -0.0980 3.1495 4.8890 23 6 0.1307 2.2810 5.9427 24 9 -0.5891 2.3939 7.0804 25 6 1.0975 1.2963 5.8294 26 6 1.8327 1.1811 4.6648 27 1 -0.3633 0.4520 0.9230 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0700 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.7427 1.9427 -4.4466 33 1 1.4126 3.1275 1.0028 34 1 5.0038 4.9522 3.2904 35 1 6.1472 3.8476 4.0904 36 1 6.0190 3.8630 2.3149 37 1 0.4667 3.7160 2.9070 38 1 -0.8519 3.9180 4.9763 39 1 1.2771 0.6185 6.6508 40 1 2.5865 0.4129 4.5762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573217799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:21 Heat of formation + Delta-G solvation = -96.544262 kcal Electronic energy + Delta-G solvation = -24350.930819 eV Core-core repulsion = 20659.672029 eV Total energy + Delta-G solvation = -3691.258791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.90957 -40.59467 -38.95044 -37.00668 -35.86503 -33.36229 -31.69894 -31.16982 -29.96163 -28.13185 -26.90023 -25.06354 -23.34604 -22.87573 -22.19415 -20.57929 -19.34157 -17.78552 -17.63437 -17.05257 -16.54677 -16.30645 -16.06453 -15.59197 -15.49719 -14.93578 -14.18287 -13.94718 -13.83689 -13.55419 -13.48055 -13.17639 -13.04267 -12.80992 -12.47221 -12.33425 -12.18172 -11.83834 -11.58469 -11.16667 -10.98606 -10.75234 -10.67686 -10.62014 -10.45005 -10.27185 -10.06034 -9.39007 -9.09497 -9.04754 -8.61467 -8.55222 -7.92247 -6.11237 -4.09973 1.09090 1.25517 2.39276 2.86995 3.24174 3.32537 3.35413 3.60354 4.24200 4.35926 4.56390 4.72952 4.84250 4.86126 5.07570 5.15173 5.21197 5.23159 5.28172 5.35260 5.51021 5.55085 5.88953 5.95454 6.04235 6.10242 6.12390 6.23446 6.37259 6.49017 6.52549 6.61506 6.80636 6.86708 7.01195 7.14808 7.42101 7.48284 7.64188 7.93143 8.08345 8.51112 8.92267 9.49719 11.01660 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005131 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.833203 B = 5455.503030 C = 6337.676423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C 0.184 3.816 4 H 0.004 0.996 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.638 5.638 14 C 0.135 3.865 15 H 0.119 0.881 16 C 0.431 3.569 17 O -0.486 6.486 18 O -0.361 6.361 19 C 0.033 3.967 20 C -0.071 4.071 21 C -0.061 4.061 22 C -0.155 4.155 23 C 0.093 3.907 24 F -0.145 7.145 25 C -0.156 4.156 26 C -0.073 4.073 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.355 0.645 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -1.186 18.222 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.022 0.978 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.271 5.271 14 C 0.021 3.979 15 H 0.136 0.864 16 C 0.270 3.730 17 O -0.371 6.371 18 O -0.277 6.277 19 C -0.061 4.061 20 C -0.072 4.072 21 C -0.080 4.080 22 C -0.173 4.173 23 C 0.074 3.926 24 F -0.123 7.123 25 C -0.175 4.175 26 C -0.091 4.091 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.177 0.823 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.384 -1.383 17.930 18.140 hybrid contribution 1.393 -0.134 -0.398 1.455 sum 3.777 -1.517 17.532 17.998 Atomic orbital electron populations 1.21473 0.95266 0.98543 1.03031 1.21806 0.97704 0.97786 0.98046 1.19680 0.93096 0.91246 0.88392 0.97829 1.20882 1.32528 1.13171 0.88077 0.90170 1.24850 0.95420 0.96738 0.95699 1.69875 1.45320 1.40360 0.97788 0.86907 0.80877 0.83856 0.76902 1.20259 1.22460 1.19572 1.61023 1.43177 1.18377 1.04485 1.20464 0.87692 0.97197 0.92522 0.86382 1.25363 0.82680 0.85965 0.79006 1.90746 1.73387 1.37307 1.35688 1.86550 1.37701 1.53534 1.49936 1.23209 0.89301 0.90565 1.03014 1.19500 0.97385 0.96431 0.93883 1.20900 0.93437 0.97166 0.96447 1.21107 1.02378 1.00644 0.93203 1.17737 0.93681 0.98080 0.83102 1.91479 1.76555 1.95640 1.48659 1.21023 0.97427 0.99353 0.99666 1.20848 0.98328 0.98346 0.91591 0.92614 0.91243 0.95932 0.94988 0.93750 0.92566 0.82257 0.92137 0.88525 0.92033 0.84602 0.84794 0.84851 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.52 37.16 0.35 -2.17 16 2 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 3 C 0.18 4.16 1.59 -68.87 -0.11 4.05 16 4 H 0.00 0.10 6.75 -51.93 -0.35 -0.25 16 5 C -0.51 -13.71 7.89 -34.44 -0.27 -13.98 16 6 H 0.08 2.35 7.85 -52.48 -0.41 1.94 16 7 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 8 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.88 21.72 24.38 -169.99 -4.14 17.57 16 10 H -0.28 -6.57 6.86 56.52 0.39 -6.18 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.64 -12.08 4.60 -103.40 -0.48 -12.56 16 14 C 0.13 2.13 2.51 -70.02 -0.18 1.96 16 15 H 0.12 1.77 7.06 -51.93 -0.37 1.41 16 16 C 0.43 7.25 7.02 36.00 0.25 7.51 16 17 O -0.49 -9.83 15.42 -18.76 -0.29 -10.12 16 18 O -0.36 -5.18 10.48 -39.26 -0.41 -5.59 16 19 C 0.03 0.38 10.56 101.05 1.07 1.45 16 20 C -0.07 -0.96 4.88 -104.62 -0.51 -1.47 16 21 C -0.06 -0.81 9.32 -39.59 -0.37 -1.18 16 22 C -0.15 -1.86 10.03 -39.52 -0.40 -2.25 16 23 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 24 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 25 C -0.16 -1.71 10.03 -39.51 -0.40 -2.11 16 26 C -0.07 -0.84 9.67 -39.59 -0.38 -1.22 16 27 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 28 H 0.07 1.57 7.12 -51.93 -0.37 1.20 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.58 7.54 -51.93 -0.39 0.19 16 31 H 0.04 1.00 3.25 -51.93 -0.17 0.83 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.36 7.12 6.59 -39.29 -0.26 6.86 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 37 H 0.14 1.82 7.31 -52.49 -0.38 1.43 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.27 8.04 -52.49 -0.42 0.85 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -30.79 333.81 -6.18 -36.97 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.24 Total: 5.68 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.46 Total: -9.12 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.30 Total: -38.68 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.70 Total: -15.71 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.79 -6.18 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.572 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds