Wall clock time and date at job start Tue Mar 31 2020 08:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09000 * 109.47311 * 178.95334 * 3 2 1 5 5 C 1.50698 * 109.46986 * 298.94677 * 3 2 1 6 6 H 1.08005 * 119.99871 * 119.99995 * 5 3 2 7 7 C 1.37872 * 120.00720 * 300.00205 * 5 3 2 8 8 N 1.31513 * 120.00498 * 179.97438 * 7 5 3 9 9 Si 1.86811 * 119.99484 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47177 * 90.00135 * 9 7 5 11 11 H 1.48505 * 109.46774 * 209.99882 * 9 7 5 12 12 H 1.48500 * 109.46914 * 329.99884 * 9 7 5 13 13 N 1.46900 * 109.47297 * 58.95139 * 3 2 1 14 14 C 1.46896 * 111.00228 * 86.01892 * 13 3 2 15 15 H 1.08999 * 109.47028 * 326.81022 * 14 13 3 16 16 C 1.50697 * 109.47000 * 86.80506 * 14 13 3 17 17 O 1.20834 * 120.00190 * 359.97438 * 16 14 13 18 18 O 1.34232 * 120.00386 * 180.02562 * 16 14 13 19 19 C 1.45195 * 117.00304 * 179.97438 * 18 16 14 20 20 C 1.50695 * 109.47407 * 206.80246 * 14 13 3 21 21 C 1.38245 * 119.97419 * 319.73055 * 20 14 13 22 22 C 1.38203 * 120.02161 * 179.76409 * 21 20 14 23 23 C 1.38452 * 119.97636 * 0.50328 * 22 21 20 24 24 F 1.35102 * 120.02563 * 179.76759 * 23 22 21 25 25 C 1.38462 * 119.94888 * 359.75078 * 23 22 21 26 26 C 1.38199 * 119.97425 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.47113 * 296.09151 * 1 2 3 28 28 H 1.08994 * 109.47296 * 56.09601 * 1 2 3 29 29 H 1.09003 * 109.47333 * 176.09686 * 1 2 3 30 30 H 1.09000 * 109.47543 * 120.00042 * 2 1 3 31 31 H 1.09002 * 109.46982 * 239.99991 * 2 1 3 32 32 H 0.97006 * 119.99982 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99989 * 209.97955 * 13 3 2 34 34 H 1.09006 * 109.47128 * 60.00511 * 19 18 16 35 35 H 1.09004 * 109.47096 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47811 * 300.00236 * 19 18 16 37 37 H 1.07993 * 119.98660 * 0.02562 * 21 20 14 38 38 H 1.08001 * 120.00879 * 180.25452 * 22 21 20 39 39 H 1.08000 * 120.01244 * 179.97438 * 25 23 22 40 40 H 1.07996 * 119.98377 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 0.0188 5 6 1.5591 2.1453 -1.2433 6 1 0.9365 3.0240 -1.1604 7 6 1.9136 1.6667 -2.4867 8 7 1.4935 2.2797 -3.5717 9 14 2.9909 0.1472 -2.6302 10 1 2.1337 -1.0642 -2.6828 11 1 3.8041 0.2324 -3.8699 12 1 3.8913 0.0658 -1.4521 13 7 1.5297 2.1423 1.1865 14 6 2.4065 1.9232 2.3446 15 1 2.8416 0.9255 2.2873 16 6 3.5077 2.9521 2.3427 17 8 3.5572 3.7824 1.4662 18 8 4.4341 2.9456 3.3140 19 6 5.4653 3.9656 3.2483 20 6 1.6037 2.0493 3.6136 21 6 0.6423 3.0361 3.7275 22 6 -0.0980 3.1495 4.8890 23 6 0.1307 2.2810 5.9427 24 9 -0.5891 2.3939 7.0804 25 6 1.0975 1.2963 5.8294 26 6 1.8327 1.1811 4.6648 27 1 -0.3633 0.4520 0.9230 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0700 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.7427 1.9427 -4.4466 33 1 1.4126 3.1275 1.0028 34 1 5.0038 4.9522 3.2904 35 1 6.1472 3.8476 4.0904 36 1 6.0190 3.8630 2.3149 37 1 0.4667 3.7160 2.9070 38 1 -0.8519 3.9180 4.9763 39 1 1.2771 0.6185 6.6508 40 1 2.5865 0.4129 4.5762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573217799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:20 Heat of formation + Delta-G solvation = -115.695001 kcal Electronic energy + Delta-G solvation = -24351.761257 eV Core-core repulsion = 20659.672029 eV Total energy + Delta-G solvation = -3692.089229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.84602 -41.87161 -39.97636 -38.42995 -37.31900 -34.93965 -33.59384 -32.09338 -31.26433 -29.23169 -28.54021 -26.42545 -25.05720 -23.91432 -23.26544 -21.95006 -20.91826 -19.06024 -18.85804 -18.46102 -17.87637 -17.71330 -17.14816 -17.05864 -16.52645 -16.24365 -15.53547 -15.33296 -15.28282 -14.86315 -14.71176 -14.50907 -14.40360 -14.17272 -13.87561 -13.57371 -13.32432 -13.09248 -12.89229 -12.77906 -12.55860 -12.33705 -12.10727 -11.93020 -11.88853 -11.81121 -11.69493 -11.25480 -10.96810 -10.69476 -9.99798 -9.57538 -9.47111 -8.28496 -6.30499 0.11594 0.35006 1.08685 1.29226 1.33540 1.42526 1.72060 2.31097 2.62724 3.07262 3.26640 3.31946 3.60615 3.78409 3.92712 4.04708 4.11529 4.28605 4.29432 4.33358 4.41612 4.45922 4.55083 4.65875 4.72599 4.89840 4.98926 5.03555 5.16313 5.20424 5.27300 5.28669 5.36592 5.39106 5.54088 5.63831 5.79969 5.86500 5.95816 6.29910 6.46939 6.67374 6.76626 7.32818 8.88299 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005131 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.833203 B = 5455.503030 C = 6337.676423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.191 3.809 4 H -0.009 1.009 5 C -0.504 4.504 6 H 0.038 0.962 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.942 3.058 10 H -0.259 1.259 11 H -0.302 1.302 12 H -0.252 1.252 13 N -0.634 5.634 14 C 0.136 3.864 15 H 0.135 0.865 16 C 0.434 3.566 17 O -0.531 6.531 18 O -0.354 6.354 19 C 0.026 3.974 20 C -0.083 4.083 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.086 3.914 24 F -0.147 7.147 25 C -0.147 4.147 26 C -0.066 4.066 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.344 0.656 34 H 0.057 0.943 35 H 0.138 0.862 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -3.653 21.243 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.009 0.991 5 C -0.542 4.542 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.185 1.185 11 H -0.230 1.230 12 H -0.177 1.177 13 N -0.265 5.265 14 C 0.024 3.976 15 H 0.153 0.847 16 C 0.276 3.724 17 O -0.419 6.419 18 O -0.269 6.269 19 C -0.068 4.068 20 C -0.084 4.084 21 C -0.094 4.094 22 C -0.176 4.176 23 C 0.067 3.933 24 F -0.125 7.125 25 C -0.166 4.166 26 C -0.084 4.084 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.510 -3.866 21.011 21.650 hybrid contribution 1.032 0.768 -1.198 1.758 sum 4.542 -3.099 19.813 20.561 Atomic orbital electron populations 1.21371 0.94759 0.99538 1.01852 1.21775 0.98146 0.96214 0.99229 1.19475 0.92066 0.92429 0.87815 0.99148 1.21135 1.30902 1.11858 0.90302 0.94404 1.25676 0.97022 1.00006 0.95329 1.70033 1.47644 1.42630 0.98428 0.85953 0.79436 0.80540 0.77104 1.18509 1.23048 1.17657 1.60960 1.44088 1.17356 1.04145 1.20530 0.87484 0.97514 0.92118 0.84728 1.25507 0.82972 0.85362 0.78569 1.90739 1.74493 1.39186 1.37527 1.86524 1.37612 1.54153 1.48587 1.23533 0.88919 0.89814 1.04488 1.19373 0.97734 0.97688 0.93558 1.20866 0.94283 0.97471 0.96735 1.21206 1.02432 1.01109 0.92853 1.17922 0.94028 0.98430 0.82912 1.91478 1.76687 1.95680 1.48689 1.21319 0.96165 0.98933 1.00148 1.21094 0.98543 0.98033 0.90723 0.91628 0.94975 0.93393 0.91173 0.94922 0.92656 0.83492 0.92399 0.84384 0.92813 0.85906 0.83668 0.82032 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 9.52 71.98 0.69 -3.84 16 2 C -0.12 -4.58 5.27 30.59 0.16 -4.42 16 3 C 0.19 8.56 1.59 44.17 0.07 8.63 16 4 H -0.01 -0.43 6.75 -2.39 -0.02 -0.44 16 5 C -0.50 -28.16 7.89 25.60 0.20 -27.95 16 6 H 0.04 2.37 7.85 -2.91 -0.02 2.35 16 7 C 0.02 0.99 5.45 84.65 0.46 1.45 16 8 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 9 Si 0.94 44.74 24.38 68.60 1.67 46.41 16 10 H -0.26 -11.55 6.86 99.48 0.68 -10.87 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 13 N -0.63 -24.00 4.60 -481.06 -2.21 -26.21 16 14 C 0.14 4.10 2.51 43.42 0.11 4.21 16 15 H 0.14 3.59 7.06 -2.39 -0.02 3.57 16 16 C 0.43 14.30 7.02 71.23 0.50 14.80 16 17 O -0.53 -21.91 15.42 21.94 0.34 -21.57 16 18 O -0.35 -9.41 10.48 -51.44 -0.54 -9.95 16 19 C 0.03 0.54 10.56 113.37 1.20 1.74 16 20 C -0.08 -2.06 4.88 -19.86 -0.10 -2.16 16 21 C -0.08 -1.93 9.32 22.26 0.21 -1.72 16 22 C -0.16 -3.56 10.03 22.31 0.22 -3.33 16 23 C 0.09 1.85 7.30 22.37 0.16 2.02 16 24 F -0.15 -3.26 17.27 44.97 0.78 -2.48 16 25 C -0.15 -2.65 10.03 22.31 0.22 -2.43 16 26 C -0.07 -1.26 9.67 22.26 0.22 -1.04 16 27 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 28 H 0.03 1.45 7.12 -2.39 -0.02 1.43 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.26 7.54 -2.39 -0.02 2.24 16 31 H 0.03 1.38 3.25 -2.39 -0.01 1.37 16 32 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.34 14.44 6.59 -89.69 -0.59 13.85 16 34 H 0.06 1.25 8.13 -2.38 -0.02 1.24 16 35 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.12 3.41 7.31 -2.91 -0.02 3.39 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.16 2.20 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -69.45 333.81 5.05 -64.40 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.39 Total: 22.43 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.32 Total: -14.05 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.91 Total: -85.18 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.20 Total: -31.52 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Total: -69.45 5.05 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.295 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds