Wall clock time and date at job start Tue Mar 31 2020 08:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47004 * 2 1 4 4 H 1.08995 * 109.47302 * 56.60919 * 3 2 1 5 5 C 1.50701 * 109.46947 * 176.60950 * 3 2 1 6 6 H 1.08000 * 120.00262 * 120.00284 * 5 3 2 7 7 C 1.37875 * 120.00070 * 299.99840 * 5 3 2 8 8 N 1.31519 * 119.99934 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46902 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46802 * 119.99756 * 9 7 5 12 12 H 1.48500 * 109.47138 * 240.00109 * 9 7 5 13 13 N 1.46899 * 109.46821 * 296.60626 * 3 2 1 14 14 C 1.46902 * 110.99700 * 155.83446 * 13 3 2 15 15 H 1.09006 * 109.46973 * 34.33633 * 14 13 3 16 16 C 1.50695 * 109.47217 * 274.34050 * 14 13 3 17 17 O 1.20822 * 120.00360 * 333.90708 * 16 14 13 18 18 O 1.34227 * 120.00123 * 153.91274 * 16 14 13 19 19 C 1.45199 * 117.00390 * 180.02562 * 18 16 14 20 20 C 1.50700 * 109.47394 * 154.33509 * 14 13 3 21 21 C 1.38251 * 119.97034 * 39.72424 * 20 14 13 22 22 C 1.38193 * 120.02540 * 179.76677 * 21 20 14 23 23 C 1.38458 * 119.97200 * 0.50862 * 22 21 20 24 24 F 1.35104 * 120.02383 * 179.76625 * 23 22 21 25 25 C 1.38458 * 119.95035 * 359.74769 * 23 22 21 26 26 C 1.38195 * 119.97309 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.46821 * 185.18643 * 1 2 3 28 28 H 1.08998 * 109.47184 * 305.18540 * 1 2 3 29 29 H 1.08997 * 109.47115 * 65.19298 * 1 2 3 30 30 H 1.09005 * 109.47315 * 239.99899 * 2 1 3 31 31 H 1.08998 * 109.47749 * 120.00128 * 2 1 3 32 32 H 0.97004 * 119.99728 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00089 * 279.78702 * 13 3 2 34 34 H 1.08995 * 109.47965 * 179.97438 * 19 18 16 35 35 H 1.09010 * 109.46988 * 299.99699 * 19 18 16 36 36 H 1.09003 * 109.47059 * 59.99114 * 19 18 16 37 37 H 1.08004 * 119.98367 * 0.02562 * 21 20 14 38 38 H 1.07997 * 120.01590 * 180.26307 * 22 21 20 39 39 H 1.08001 * 120.01060 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.98632 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6279 1.9736 0.8580 5 6 3.5446 1.4434 0.0840 6 1 4.1293 1.8953 -0.7036 7 6 4.1750 0.8672 1.1665 8 7 3.4631 0.3165 2.1255 9 14 6.0401 0.8689 1.2710 10 1 6.6022 1.5461 0.0750 11 1 6.4665 1.5930 2.4954 12 1 6.5340 -0.5305 1.3261 13 7 1.6184 2.1109 -1.2383 14 6 1.5633 3.5677 -1.0577 15 1 2.3522 3.8790 -0.3729 16 6 0.2225 3.9529 -0.4878 17 8 -0.7410 3.2504 -0.6821 18 8 0.0987 5.0767 0.2358 19 6 -1.2222 5.3849 0.7540 20 6 1.7571 4.2467 -2.3891 21 6 1.1681 3.7216 -3.5244 22 6 1.3411 4.3460 -4.7450 23 6 2.1133 5.4919 -4.8325 24 9 2.2869 6.1005 -6.0261 25 6 2.7070 6.0139 -3.6958 26 6 2.5278 5.3910 -2.4752 27 1 -0.3633 -1.0235 0.0929 28 1 -0.3633 0.5922 0.8399 29 1 -0.3633 0.4312 -0.9328 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9066 -0.0885 2.8872 33 1 2.2242 1.8644 -2.0066 34 1 -1.1829 6.3162 1.3189 35 1 -1.9220 5.4917 -0.0750 36 1 -1.5536 4.5777 1.4073 37 1 0.5692 2.8254 -3.4564 38 1 0.8775 3.9381 -5.6310 39 1 3.3098 6.9075 -3.7630 40 1 2.9905 5.7982 -1.5884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573217800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:23 Heat of formation + Delta-G solvation = -107.674113 kcal Electronic energy + Delta-G solvation = -24284.086343 eV Core-core repulsion = 20592.344925 eV Total energy + Delta-G solvation = -3691.741417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.89385 -40.26230 -38.89453 -36.54031 -35.61606 -33.23306 -31.57782 -31.11434 -29.73311 -28.01120 -26.62020 -25.00396 -23.07951 -22.59830 -22.12262 -20.05622 -19.54826 -17.73605 -17.35739 -16.74239 -16.23068 -16.11356 -16.06709 -15.57024 -15.16321 -14.81402 -14.27207 -13.90105 -13.54363 -13.46135 -13.13171 -13.02876 -12.78997 -12.66651 -12.35586 -12.09189 -11.77044 -11.45768 -11.30128 -11.08417 -11.02404 -10.89967 -10.73961 -10.43834 -10.31971 -9.97636 -9.64091 -9.58396 -9.16328 -9.06240 -8.51846 -8.46064 -7.52951 -6.08201 -4.22236 1.09875 1.28497 2.72235 3.04486 3.21725 3.30920 3.33345 3.65630 4.26776 4.32924 4.73008 4.82553 4.90127 5.12705 5.19458 5.28163 5.31320 5.37193 5.40150 5.52019 5.70445 5.87433 5.95481 6.05653 6.15093 6.27752 6.42486 6.55397 6.58337 6.74379 6.76234 6.91055 7.02824 7.24939 7.32409 7.50855 7.70601 7.88103 8.00299 8.14613 8.31975 8.45132 8.88101 9.46437 10.92508 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.005580 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.657800 B = 5016.647189 C = 6076.798925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.552 4.552 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.664 5.664 14 C 0.146 3.854 15 H 0.092 0.908 16 C 0.469 3.531 17 O -0.481 6.481 18 O -0.366 6.366 19 C 0.038 3.962 20 C -0.094 4.094 21 C -0.062 4.062 22 C -0.158 4.158 23 C 0.095 3.905 24 F -0.144 7.144 25 C -0.158 4.158 26 C -0.071 4.071 27 H 0.022 0.978 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.262 0.738 33 H 0.345 0.655 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 10.226 -7.722 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.297 5.297 14 C 0.034 3.966 15 H 0.110 0.890 16 C 0.309 3.691 17 O -0.365 6.365 18 O -0.282 6.282 19 C -0.057 4.057 20 C -0.095 4.095 21 C -0.080 4.080 22 C -0.177 4.177 23 C 0.076 3.924 24 F -0.123 7.123 25 C -0.177 4.177 26 C -0.089 4.089 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.570 9.837 -7.503 13.567 hybrid contribution 1.849 0.253 0.103 1.869 sum -3.721 10.090 -7.400 13.054 Atomic orbital electron populations 1.21661 0.98488 0.97972 1.00978 1.21473 0.92412 0.98534 1.01822 1.19275 0.92792 0.91528 0.85526 0.95112 1.21856 0.92231 1.38515 1.06476 0.92469 1.24923 0.98148 0.94745 0.95488 1.69896 1.35025 1.37346 1.09628 0.86584 0.85833 0.77851 0.78003 1.19802 1.20987 1.20905 1.60610 1.57469 1.01241 1.10400 1.19700 0.91478 0.92441 0.92975 0.88989 1.23836 0.91917 0.77921 0.75391 1.90596 1.40094 1.50490 1.55345 1.86509 1.34740 1.42819 1.64178 1.23146 0.82232 1.01464 0.98819 1.19752 0.99101 0.96203 0.94465 1.21099 0.97048 0.99407 0.90486 1.21144 1.01272 0.95783 0.99500 1.17779 0.99988 0.93798 0.80837 1.91479 1.94064 1.82569 1.44192 1.21060 1.02813 1.02127 0.91690 1.20998 0.96503 0.93998 0.97408 0.95897 0.94694 0.92885 0.94885 0.89096 0.92785 0.83471 0.88655 0.92414 0.92060 0.83540 0.84758 0.84759 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.72 37.16 0.36 -2.49 16 2 C -0.10 -2.45 5.44 -26.73 -0.15 -2.59 16 3 C 0.22 5.11 1.81 -68.86 -0.12 4.98 16 4 H 0.03 0.82 7.67 -51.93 -0.40 0.43 16 5 C -0.55 -14.01 8.23 -34.44 -0.28 -14.29 16 6 H 0.06 1.43 7.75 -52.49 -0.41 1.02 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.12 11.30 55.43 0.63 -23.50 16 9 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.66 -13.12 4.55 -103.39 -0.47 -13.59 16 14 C 0.15 2.61 2.53 -70.02 -0.18 2.43 16 15 H 0.09 1.74 7.46 -51.93 -0.39 1.36 16 16 C 0.47 8.67 6.82 36.00 0.25 8.92 16 17 O -0.48 -9.81 16.38 -18.75 -0.31 -10.12 16 18 O -0.37 -6.01 10.56 -39.25 -0.41 -6.43 16 19 C 0.04 0.48 10.56 101.05 1.07 1.54 16 20 C -0.09 -1.42 4.70 -104.62 -0.49 -1.91 16 21 C -0.06 -0.88 8.98 -39.59 -0.36 -1.23 16 22 C -0.16 -2.00 10.03 -39.52 -0.40 -2.40 16 23 C 0.10 1.22 7.30 -39.42 -0.29 0.94 16 24 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 25 C -0.16 -1.92 10.03 -39.52 -0.40 -2.32 16 26 C -0.07 -0.93 9.67 -39.60 -0.38 -1.31 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.12 7.86 -51.93 -0.41 0.71 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.35 6.58 7.67 -39.29 -0.30 6.28 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.69 8.13 -51.92 -0.42 0.27 16 36 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.15 2.11 7.71 -52.48 -0.40 1.71 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.61 8.04 -52.49 -0.42 1.19 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -28.52 345.40 -7.36 -35.88 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.55 Total: 7.04 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.46 Total: -7.98 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.16 Total: -37.09 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.72 Total: -16.55 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.52 -7.36 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.791 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds