Wall clock time and date at job start Tue Mar 31 2020 08:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47004 * 2 1 4 4 H 1.08995 * 109.47302 * 56.60919 * 3 2 1 5 5 C 1.50701 * 109.46947 * 176.60950 * 3 2 1 6 6 H 1.08000 * 120.00262 * 120.00284 * 5 3 2 7 7 C 1.37875 * 120.00070 * 299.99840 * 5 3 2 8 8 N 1.31519 * 119.99934 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46902 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46802 * 119.99756 * 9 7 5 12 12 H 1.48500 * 109.47138 * 240.00109 * 9 7 5 13 13 N 1.46899 * 109.46821 * 296.60626 * 3 2 1 14 14 C 1.46902 * 110.99700 * 155.83446 * 13 3 2 15 15 H 1.09006 * 109.46973 * 34.33633 * 14 13 3 16 16 C 1.50695 * 109.47217 * 274.34050 * 14 13 3 17 17 O 1.20822 * 120.00360 * 333.90708 * 16 14 13 18 18 O 1.34227 * 120.00123 * 153.91274 * 16 14 13 19 19 C 1.45199 * 117.00390 * 180.02562 * 18 16 14 20 20 C 1.50700 * 109.47394 * 154.33509 * 14 13 3 21 21 C 1.38251 * 119.97034 * 39.72424 * 20 14 13 22 22 C 1.38193 * 120.02540 * 179.76677 * 21 20 14 23 23 C 1.38458 * 119.97200 * 0.50862 * 22 21 20 24 24 F 1.35104 * 120.02383 * 179.76625 * 23 22 21 25 25 C 1.38458 * 119.95035 * 359.74769 * 23 22 21 26 26 C 1.38195 * 119.97309 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.46821 * 185.18643 * 1 2 3 28 28 H 1.08998 * 109.47184 * 305.18540 * 1 2 3 29 29 H 1.08997 * 109.47115 * 65.19298 * 1 2 3 30 30 H 1.09005 * 109.47315 * 239.99899 * 2 1 3 31 31 H 1.08998 * 109.47749 * 120.00128 * 2 1 3 32 32 H 0.97004 * 119.99728 * 180.02562 * 8 7 5 33 33 H 1.00900 * 111.00089 * 279.78702 * 13 3 2 34 34 H 1.08995 * 109.47965 * 179.97438 * 19 18 16 35 35 H 1.09010 * 109.46988 * 299.99699 * 19 18 16 36 36 H 1.09003 * 109.47059 * 59.99114 * 19 18 16 37 37 H 1.08004 * 119.98367 * 0.02562 * 21 20 14 38 38 H 1.07997 * 120.01590 * 180.26307 * 22 21 20 39 39 H 1.08001 * 120.01060 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.98632 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6279 1.9736 0.8580 5 6 3.5446 1.4434 0.0840 6 1 4.1293 1.8953 -0.7036 7 6 4.1750 0.8672 1.1665 8 7 3.4631 0.3165 2.1255 9 14 6.0401 0.8689 1.2710 10 1 6.6022 1.5461 0.0750 11 1 6.4665 1.5930 2.4954 12 1 6.5340 -0.5305 1.3261 13 7 1.6184 2.1109 -1.2383 14 6 1.5633 3.5677 -1.0577 15 1 2.3522 3.8790 -0.3729 16 6 0.2225 3.9529 -0.4878 17 8 -0.7410 3.2504 -0.6821 18 8 0.0987 5.0767 0.2358 19 6 -1.2222 5.3849 0.7540 20 6 1.7571 4.2467 -2.3891 21 6 1.1681 3.7216 -3.5244 22 6 1.3411 4.3460 -4.7450 23 6 2.1133 5.4919 -4.8325 24 9 2.2869 6.1005 -6.0261 25 6 2.7070 6.0139 -3.6958 26 6 2.5278 5.3910 -2.4752 27 1 -0.3633 -1.0235 0.0929 28 1 -0.3633 0.5922 0.8399 29 1 -0.3633 0.4312 -0.9328 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9066 -0.0885 2.8872 33 1 2.2242 1.8644 -2.0066 34 1 -1.1829 6.3162 1.3189 35 1 -1.9220 5.4917 -0.0750 36 1 -1.5536 4.5777 1.4073 37 1 0.5692 2.8254 -3.4564 38 1 0.8775 3.9381 -5.6310 39 1 3.3098 6.9075 -3.7630 40 1 2.9905 5.7982 -1.5884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573217800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:22 Heat of formation + Delta-G solvation = -122.559575 kcal Electronic energy + Delta-G solvation = -24284.731825 eV Core-core repulsion = 20592.344925 eV Total energy + Delta-G solvation = -3692.386899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.90061 -41.62690 -40.04010 -38.08969 -37.15245 -34.87095 -33.41187 -32.14097 -31.18083 -29.21681 -28.29890 -26.49074 -24.62208 -23.93039 -23.29758 -21.50304 -21.29107 -19.06245 -18.58714 -18.42086 -17.57811 -17.52572 -17.25712 -16.63077 -16.57726 -16.42654 -15.56510 -15.40540 -14.99401 -14.59150 -14.47879 -14.41276 -14.15278 -13.98255 -13.84738 -13.31495 -13.24072 -13.12107 -12.96352 -12.77803 -12.58747 -12.52413 -12.10524 -11.96095 -11.72348 -11.57644 -11.45707 -11.43404 -11.03262 -10.47513 -10.06648 -9.62453 -9.23095 -8.06370 -6.28256 0.02584 0.27788 1.28598 1.40479 1.44138 1.53376 1.77833 2.41744 2.58832 3.15903 3.25118 3.47140 3.66229 3.85733 3.95984 4.03851 4.30180 4.33488 4.34379 4.38065 4.55200 4.58007 4.68553 4.75152 4.91754 4.94404 5.00012 5.10733 5.13499 5.22185 5.37627 5.42823 5.46122 5.53591 5.60900 5.75700 5.88357 6.05640 6.08580 6.25982 6.66754 6.88015 6.96022 7.43953 8.92124 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.005580 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.657800 B = 5016.647189 C = 6076.798925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.227 3.773 4 H -0.006 1.006 5 C -0.558 4.558 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.658 5.658 14 C 0.149 3.851 15 H 0.078 0.922 16 C 0.469 3.531 17 O -0.507 6.507 18 O -0.370 6.370 19 C 0.030 3.970 20 C -0.109 4.109 21 C -0.069 4.069 22 C -0.154 4.154 23 C 0.092 3.908 24 F -0.143 7.143 25 C -0.150 4.150 26 C -0.072 4.072 27 H 0.041 0.959 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.350 0.650 34 H 0.133 0.867 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 11.582 -9.014 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.119 3.881 4 H 0.012 0.988 5 C -0.597 4.597 6 H 0.078 0.922 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.291 5.291 14 C 0.037 3.963 15 H 0.096 0.904 16 C 0.310 3.690 17 O -0.394 6.394 18 O -0.286 6.286 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.087 4.087 22 C -0.172 4.172 23 C 0.073 3.927 24 F -0.122 7.122 25 C -0.168 4.168 26 C -0.091 4.091 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.950 11.217 -8.807 15.096 hybrid contribution 1.600 -0.083 0.493 1.677 sum -3.350 11.134 -8.314 14.294 Atomic orbital electron populations 1.21489 0.96795 0.98890 1.00366 1.21351 0.93839 0.98229 1.00471 1.18968 0.91876 0.91448 0.85833 0.98811 1.22139 0.93216 1.37926 1.06385 0.92188 1.25656 1.02181 0.94616 0.95320 1.70030 1.36589 1.38231 1.10159 0.85615 0.80960 0.77651 0.78040 1.18967 1.20925 1.20920 1.60446 1.57146 1.02719 1.08757 1.19633 0.90886 0.91238 0.94550 0.90417 1.23940 0.91786 0.78137 0.75142 1.90573 1.40894 1.51415 1.56486 1.86485 1.36835 1.41731 1.63585 1.23495 0.80740 1.02837 0.99259 1.19608 1.00924 0.97324 0.93125 1.21030 0.97324 0.99492 0.90866 1.21295 1.00860 0.95530 0.99538 1.17916 0.99928 0.93813 0.81077 1.91487 1.94031 1.82511 1.44164 1.21301 1.02228 1.02531 0.90773 1.21131 0.96055 0.93378 0.98490 0.93947 0.96292 0.92553 0.94602 0.91886 0.92881 0.82962 0.84844 0.91639 0.92989 0.84319 0.82756 0.82137 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.72 71.98 0.70 -4.38 16 2 C -0.10 -4.81 5.44 30.60 0.17 -4.65 16 3 C 0.23 11.00 1.81 44.17 0.08 11.08 16 4 H -0.01 -0.34 7.67 -2.39 -0.02 -0.36 16 5 C -0.56 -28.57 8.23 25.60 0.21 -28.36 16 6 H 0.06 2.98 7.75 -2.91 -0.02 2.96 16 7 C 0.02 1.20 5.30 84.65 0.45 1.64 16 8 N -0.91 -50.92 11.30 21.45 0.24 -50.67 16 9 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.66 -26.35 4.55 -481.03 -2.19 -28.54 16 14 C 0.15 5.37 2.53 43.42 0.11 5.48 16 15 H 0.08 3.01 7.46 -2.38 -0.02 3.00 16 16 C 0.47 17.51 6.82 71.23 0.49 17.99 16 17 O -0.51 -20.98 16.38 21.98 0.36 -20.62 16 18 O -0.37 -12.05 10.56 -51.39 -0.54 -12.59 16 19 C 0.03 0.73 10.56 113.37 1.20 1.93 16 20 C -0.11 -3.20 4.70 -19.86 -0.09 -3.29 16 21 C -0.07 -1.87 8.98 22.26 0.20 -1.67 16 22 C -0.15 -3.58 10.03 22.31 0.22 -3.35 16 23 C 0.09 2.13 7.30 22.37 0.16 2.29 16 24 F -0.14 -3.33 17.27 44.97 0.78 -2.55 16 25 C -0.15 -3.23 10.03 22.31 0.22 -3.01 16 26 C -0.07 -1.78 9.67 22.26 0.22 -1.56 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 3.40 5.99 -2.39 -0.01 3.39 16 32 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.35 13.37 7.67 -89.69 -0.69 12.69 16 34 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 36 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.14 3.96 7.71 -2.91 -0.02 3.94 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.15 3.25 8.04 -2.91 -0.02 3.22 16 Total: -1.00 -61.36 345.40 5.37 -55.99 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.36 Total: 25.07 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.33 Total: -9.85 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.94 Total: -79.21 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.18 Total: -33.22 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -61.36 5.37 -55.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.571 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds