Wall clock time and date at job start Tue Mar 31 2020 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47583 * 2 1 4 4 H 1.09002 * 109.46715 * 304.26948 * 3 2 1 5 5 C 1.50699 * 109.47423 * 184.27262 * 3 2 1 6 6 H 1.07999 * 119.99333 * 239.99478 * 5 3 2 7 7 C 1.37871 * 120.00296 * 59.99892 * 5 3 2 8 8 N 1.31518 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99922 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47026 * 59.99735 * 9 7 5 11 11 H 1.48501 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46981 * 299.99549 * 9 7 5 13 13 N 1.46903 * 109.47001 * 64.26456 * 3 2 1 14 14 C 1.46897 * 110.99735 * 205.84059 * 13 3 2 15 15 C 1.50704 * 109.47095 * 174.82583 * 14 13 3 16 16 C 1.37837 * 119.94013 * 105.02003 * 15 14 13 17 17 C 1.39688 * 119.87374 * 180.02562 * 16 15 14 18 18 C 1.47592 * 120.12313 * 179.97438 * 17 16 15 19 19 O 1.21486 * 120.00166 * 359.97438 * 18 17 16 20 20 O 1.34732 * 120.00066 * 179.97438 * 18 17 16 21 21 C 1.45207 * 116.99926 * 180.02562 * 20 18 17 22 22 C 1.39728 * 119.75347 * 359.97438 * 17 16 15 23 23 C 1.37800 * 119.87423 * 359.97438 * 22 17 16 24 24 C 1.38648 * 119.93600 * 285.00431 * 15 14 13 25 25 F 1.35105 * 119.87627 * 359.71500 * 24 15 14 26 26 H 1.08999 * 109.47541 * 174.87578 * 1 2 3 27 27 H 1.09003 * 109.47552 * 294.87847 * 1 2 3 28 28 H 1.09004 * 109.47268 * 54.87683 * 1 2 3 29 29 H 1.09002 * 109.47233 * 239.99656 * 2 1 3 30 30 H 1.08999 * 109.47370 * 120.00087 * 2 1 3 31 31 H 0.96999 * 119.99333 * 180.02562 * 8 7 5 32 32 H 1.00894 * 110.99326 * 81.89255 * 13 3 2 33 33 H 1.08997 * 109.47715 * 54.82625 * 14 13 3 34 34 H 1.09005 * 109.47486 * 294.82400 * 14 13 3 35 35 H 1.07998 * 120.06530 * 359.97438 * 16 15 14 36 36 H 1.08996 * 109.46497 * 300.00000 * 21 20 18 37 37 H 1.08993 * 109.46949 * 59.99897 * 21 20 18 38 38 H 1.09002 * 109.46898 * 180.02562 * 21 20 18 39 39 H 1.08003 * 120.06128 * 179.97438 * 22 17 16 40 40 H 1.07999 * 119.93435 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6155 1.9779 -0.8493 5 6 3.5433 1.4437 -0.1059 6 1 4.1391 1.8917 0.6756 7 6 4.1578 0.8732 -1.2002 8 7 3.4321 0.3273 -2.1516 9 14 6.0213 0.8742 -1.3310 10 1 6.5990 0.1443 -0.1740 11 1 6.4293 0.2044 -2.5920 12 1 6.5167 2.2740 -1.3307 13 7 1.6363 2.1046 1.2476 14 6 1.5404 3.5589 1.0645 15 6 1.0033 4.1894 2.3236 16 6 1.8516 4.8776 3.1642 17 6 1.3525 5.4610 4.3312 18 6 2.2560 6.1987 5.2355 19 8 3.4363 6.2989 4.9659 20 8 1.7719 6.7608 6.3602 21 6 2.7179 7.4714 7.2020 22 6 -0.0054 5.3437 4.6391 23 6 -0.8445 4.6543 3.7908 24 6 -0.3432 4.0764 2.6340 25 9 -1.1714 3.4060 1.8034 26 1 -0.3634 -1.0235 -0.0918 27 1 -0.3634 0.4323 0.9323 28 1 -0.3634 0.5913 -0.8406 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8645 -0.0744 -2.9213 32 1 2.2690 1.8758 1.9994 33 1 0.8690 3.7772 0.2341 34 1 2.5290 3.9640 0.8485 35 1 2.9004 4.9649 2.9216 36 1 3.4987 6.7853 7.5302 37 1 3.1660 8.2878 6.6359 38 1 2.1990 7.8738 8.0720 39 1 -0.3965 5.7924 5.5402 40 1 -1.8942 4.5633 4.0277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573576405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:34 Heat of formation + Delta-G solvation = -130.282586 kcal Electronic energy + Delta-G solvation = -23422.821481 eV Core-core repulsion = 19730.099687 eV Total energy + Delta-G solvation = -3692.721794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89062 -41.64314 -39.90845 -37.97283 -37.49841 -34.92043 -33.46660 -32.10264 -31.68297 -28.79654 -28.32445 -26.13617 -24.99548 -24.36257 -23.05388 -21.70264 -21.40218 -18.93468 -18.77460 -18.51720 -18.01876 -17.42017 -17.18709 -16.89659 -16.56738 -15.87408 -15.64356 -15.34352 -14.95998 -14.79303 -14.46876 -14.44688 -14.21717 -13.97242 -13.76985 -13.46175 -13.21358 -13.07354 -12.99119 -12.93659 -12.70681 -12.50907 -12.11581 -12.04154 -11.82449 -11.73237 -11.52691 -11.40469 -11.05161 -10.47975 -10.12397 -9.81014 -9.12710 -8.07704 -6.29691 -0.51777 0.13944 1.34045 1.38365 1.38932 1.46479 1.61775 2.38749 2.53447 3.12667 3.19317 3.48444 3.62553 3.71574 3.89590 4.05817 4.19150 4.33205 4.35830 4.49448 4.61199 4.68800 4.73697 4.76411 4.81874 4.86323 4.93588 5.02904 5.11677 5.12953 5.19205 5.30498 5.41898 5.49777 5.60912 5.71133 5.75537 6.07699 6.15567 6.32333 6.62078 6.73213 6.96252 7.41738 8.89351 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.004123 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.976192 B = 6790.069159 C = 8365.334764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.224 3.776 4 H 0.001 0.999 5 C -0.564 4.564 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.672 5.672 14 C 0.109 3.891 15 C -0.130 4.130 16 C -0.028 4.028 17 C -0.152 4.152 18 C 0.516 3.484 19 O -0.539 6.539 20 O -0.350 6.350 21 C 0.029 3.971 22 C -0.017 4.017 23 C -0.158 4.158 24 C 0.149 3.851 25 F -0.133 7.133 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.330 0.670 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.181 0.819 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 12.644 17.437 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 C 0.116 3.884 4 H 0.019 0.981 5 C -0.603 4.603 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.301 5.301 14 C -0.021 4.021 15 C -0.132 4.132 16 C -0.047 4.047 17 C -0.154 4.154 18 C 0.362 3.638 19 O -0.431 6.431 20 O -0.266 6.266 21 C -0.064 4.064 22 C -0.035 4.035 23 C -0.176 4.176 24 C 0.129 3.871 25 F -0.111 7.111 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.198 0.802 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.946 12.465 17.059 22.943 hybrid contribution 2.403 -0.033 -0.891 2.563 sum -6.543 12.431 16.167 21.418 Atomic orbital electron populations 1.21528 0.96385 0.99482 1.00541 1.21347 0.94346 0.98181 1.00082 1.18929 0.91544 0.91568 0.86375 0.98112 1.22135 0.93962 1.38206 1.05958 0.93191 1.25636 1.02086 0.94673 0.95387 1.69997 1.36529 1.38365 1.09902 0.85753 0.81080 0.78170 0.77466 1.19777 1.20740 1.20156 1.60875 1.54841 1.05877 1.08503 1.20562 0.98668 0.89438 0.93417 1.19833 0.92830 1.01672 0.98829 1.20973 0.99879 0.92493 0.91309 1.19078 0.94688 1.05485 0.96114 1.21184 0.86279 0.76025 0.80287 1.90851 1.18991 1.58801 1.74456 1.86516 1.42863 1.64469 1.32718 1.23617 0.93205 0.95740 0.93863 1.21568 0.89959 0.93028 0.98933 1.21438 1.03212 1.00157 0.92813 1.18130 0.87147 0.92284 0.89575 1.91532 1.71008 1.77672 1.70892 0.93685 0.92633 0.95158 0.91954 0.95321 0.92794 0.85380 0.91663 0.95086 0.85108 0.92123 0.91971 0.84248 0.80159 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.73 71.98 0.70 -4.36 16 2 C -0.10 -4.92 5.45 30.59 0.17 -4.76 16 3 C 0.22 11.32 1.98 44.17 0.09 11.40 16 4 H 0.00 0.05 7.70 -2.39 -0.02 0.03 16 5 C -0.56 -30.82 8.47 25.60 0.22 -30.60 16 6 H 0.05 2.70 7.73 -2.91 -0.02 2.68 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -52.28 11.29 21.45 0.24 -52.04 16 9 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.67 -28.47 5.72 -499.46 -2.86 -31.33 16 14 C 0.11 4.15 5.31 85.56 0.45 4.60 16 15 C -0.13 -4.01 5.44 -19.86 -0.11 -4.12 16 16 C -0.03 -0.79 9.21 22.53 0.21 -0.58 16 17 C -0.15 -3.60 5.87 -20.10 -0.12 -3.72 16 18 C 0.52 12.67 7.89 70.29 0.55 13.22 16 19 O -0.54 -16.88 16.13 19.88 0.32 -16.56 16 20 O -0.35 -6.37 9.81 -56.42 -0.55 -6.92 16 21 C 0.03 0.36 10.57 113.37 1.20 1.56 16 22 C -0.02 -0.29 9.61 22.53 0.22 -0.07 16 23 C -0.16 -2.94 10.01 22.27 0.22 -2.72 16 24 C 0.15 4.04 7.25 22.47 0.16 4.20 16 25 F -0.13 -4.14 16.74 44.97 0.75 -3.39 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 2.20 7.88 -2.39 -0.02 2.18 16 28 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 3.41 5.97 -2.39 -0.01 3.40 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.33 13.92 8.45 -89.70 -0.76 13.16 16 33 H 0.06 2.60 7.86 -2.39 -0.02 2.58 16 34 H 0.03 1.25 7.92 -2.38 -0.02 1.24 16 35 H 0.13 4.05 7.58 -2.91 -0.02 4.02 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.18 1.82 7.61 -2.91 -0.02 1.79 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -65.42 346.54 4.64 -60.78 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.30 Total: 17.76 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.41 Total: -14.24 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.62 Total: -83.37 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.23 Total: -23.48 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.75 Total: -3.39 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.42 4.64 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573576405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.499 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds