Wall clock time and date at job start Tue Mar 31 2020 08:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.46498 * 120.00239 * 299.72110 * 4 2 1 6 6 C 1.50702 * 109.47034 * 90.00162 * 5 4 2 7 7 H 1.08002 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00392 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99817 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00435 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46901 * 59.99876 * 10 8 6 12 12 H 1.48504 * 109.47325 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47092 * 299.99902 * 10 8 6 14 14 C 1.34777 * 119.99873 * 120.00305 * 4 2 1 15 15 O 1.21283 * 120.00222 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99772 * 359.97438 * 14 4 2 17 17 C 1.50701 * 109.46837 * 180.02562 * 16 14 4 18 18 C 1.38262 * 119.94034 * 269.72456 * 17 16 14 19 19 C 1.38180 * 120.09704 * 179.76674 * 18 17 16 20 20 C 1.38664 * 119.97016 * 0.51052 * 19 18 17 21 21 O 1.35948 * 120.06381 * 179.72119 * 20 19 18 22 22 C 1.38913 * 119.87238 * 359.74576 * 20 19 18 23 23 F 1.35100 * 120.04583 * 179.97438 * 22 20 19 24 24 C 1.38266 * 119.93593 * 90.00435 * 17 16 14 25 25 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 26 26 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 27 27 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 29 29 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 31 31 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 32 32 H 1.08993 * 109.47575 * 210.00600 * 5 4 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 5 4 2 34 34 H 0.96996 * 120.00179 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47685 * 300.00183 * 16 14 4 36 36 H 1.08997 * 109.47517 * 60.00530 * 16 14 4 37 37 H 1.07997 * 119.94554 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.01601 * 180.24992 * 19 18 17 39 39 H 0.96703 * 114.00391 * 270.02143 * 21 20 19 40 40 H 1.08004 * 119.98220 * 359.95051 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6693 -0.1865 2.5268 6 6 0.3863 -0.8293 2.9870 7 1 -0.1184 -1.5424 2.3520 8 6 -0.1432 -0.5072 4.2186 9 7 0.4717 0.3608 4.9920 10 14 -1.7331 -1.3045 4.7893 11 1 -1.5542 -2.7775 4.8499 12 1 -2.0869 -0.7934 6.1380 13 1 -2.8218 -0.9769 3.8340 14 6 2.7931 -1.7864 1.0727 15 8 3.1977 -2.3579 2.0630 16 6 3.1567 -2.3016 -0.2960 17 6 4.0227 -3.5271 -0.1576 18 6 5.3981 -3.3974 -0.1002 19 6 6.1949 -4.5186 0.0315 20 6 5.6154 -5.7767 0.0956 21 8 6.3979 -6.8814 0.2195 22 6 4.2337 -5.9060 0.0325 23 9 3.6654 -7.1301 0.0941 24 6 3.4407 -4.7797 -0.0941 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.4683 -0.4276 3.2278 33 1 1.5385 0.8948 2.4829 34 1 0.0995 0.5872 5.8586 35 1 2.2483 -2.5587 -0.8407 36 1 3.7016 -1.5310 -0.8413 37 1 5.8499 -2.4180 -0.1542 38 1 7.2688 -4.4154 0.0803 39 1 6.6706 -7.2670 -0.6244 40 1 2.3663 -4.8787 -0.1429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578961093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:46 Heat of formation + Delta-G solvation = -103.891973 kcal Electronic energy + Delta-G solvation = -23826.484716 eV Core-core repulsion = 20134.907305 eV Total energy + Delta-G solvation = -3691.577411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.84284 -39.93255 -38.95648 -37.03245 -35.87648 -32.91023 -31.90711 -30.84504 -30.64763 -28.11699 -26.79861 -26.23184 -23.14449 -22.91266 -21.82262 -21.13099 -18.69793 -18.15957 -16.90270 -16.78684 -16.68739 -16.42473 -15.99037 -15.22853 -15.04657 -14.60504 -14.36958 -13.98076 -13.87636 -13.53924 -13.39121 -13.27918 -12.87531 -12.40091 -12.25262 -11.95174 -11.75956 -11.67258 -11.58406 -11.46141 -11.15388 -10.93090 -10.86228 -10.68159 -10.55882 -10.39003 -10.02159 -9.55851 -9.07125 -8.87137 -8.45855 -8.40531 -7.66502 -6.02705 -4.06012 1.01201 1.15408 3.31746 3.34352 3.37169 3.38652 3.42817 3.85679 3.99324 4.28349 4.45837 4.63236 4.73200 5.09881 5.13997 5.21706 5.25032 5.32226 5.41138 5.51879 5.55344 5.62801 5.72796 5.91915 5.97814 6.01015 6.10507 6.14195 6.24443 6.34198 6.46196 6.56905 6.68425 6.94144 7.10493 7.45246 7.47146 7.56037 7.93902 8.25968 8.42476 8.91643 9.08842 9.58122 11.05457 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.004311 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.291273 B = 6493.983342 C = 7391.824389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 C -0.162 4.162 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.505 3.495 15 O -0.532 6.532 16 C -0.108 4.108 17 C -0.031 4.031 18 C -0.101 4.101 19 C -0.115 4.115 20 C 0.064 3.936 21 O -0.489 6.489 22 C 0.076 3.924 23 F -0.136 7.136 24 C -0.125 4.125 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.387 0.613 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -4.502 -17.007 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.291 3.709 15 O -0.409 6.409 16 C -0.148 4.148 17 C -0.032 4.032 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.018 3.982 21 O -0.298 6.298 22 C 0.056 3.944 23 F -0.114 7.114 24 C -0.144 4.144 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.242 0.758 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.225 -4.642 -15.663 18.290 hybrid contribution -1.063 -0.718 -0.015 1.283 sum 7.161 -5.360 -15.678 18.050 Atomic orbital electron populations 1.22144 0.94676 1.02371 1.02359 1.21015 0.95215 0.93133 0.87889 1.22160 1.00840 0.96510 1.02509 1.48337 1.48567 1.26884 1.08695 1.19234 0.96371 0.94456 0.77168 1.21388 1.07392 1.24926 1.02128 0.92466 1.24915 0.97606 0.95219 0.96356 1.69917 1.39455 1.33327 1.10772 0.86625 0.83483 0.79905 0.77807 1.20262 1.21240 1.20282 1.20086 0.79623 0.81210 0.89960 1.90718 1.53978 1.56820 1.39397 1.20818 1.00380 0.95679 0.97911 1.19257 0.93661 0.93292 0.96960 1.20944 0.92735 0.98705 0.99502 1.21221 1.00770 0.90919 1.00425 1.18387 0.87440 0.87513 1.04835 1.84904 1.68659 1.41822 1.34408 1.18019 0.90824 0.80610 1.04966 1.91482 1.85136 1.40948 1.93868 1.20948 1.00600 0.90793 1.02036 0.90024 0.93259 0.92769 0.90730 0.92920 0.92272 0.91263 0.94103 0.94777 0.92744 0.88193 0.88142 0.84958 0.84499 0.75793 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.48 37.16 0.32 -2.15 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.78 16 3 C -0.16 -2.21 9.17 37.16 0.34 -1.87 16 4 N -0.59 -11.83 2.39 -167.47 -0.40 -12.22 16 5 C 0.25 6.22 4.61 -5.19 -0.02 6.19 16 6 C -0.52 -14.25 7.83 -34.44 -0.27 -14.52 16 7 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.51 9.98 7.67 -10.99 -0.08 9.89 16 15 O -0.53 -13.18 15.61 5.55 0.09 -13.09 16 16 C -0.11 -1.46 4.14 -29.03 -0.12 -1.58 16 17 C -0.03 -0.44 4.37 -104.60 -0.46 -0.89 16 18 C -0.10 -1.26 9.69 -39.59 -0.38 -1.64 16 19 C -0.11 -1.37 9.99 -39.45 -0.39 -1.76 16 20 C 0.06 0.84 6.71 -39.17 -0.26 0.58 16 21 O -0.49 -5.75 13.37 -19.58 -0.26 -6.01 16 22 C 0.08 1.11 7.31 -39.30 -0.29 0.82 16 23 F -0.14 -2.08 17.11 2.25 0.04 -2.04 16 24 C -0.12 -1.82 9.67 -39.54 -0.38 -2.20 16 25 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.88 5.77 -51.93 -0.30 0.59 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.11 6.65 -51.93 -0.35 0.76 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.03 0.87 6.41 -51.93 -0.33 0.54 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.16 7.73 -51.93 -0.40 0.75 16 36 H 0.10 1.05 7.73 -51.93 -0.40 0.65 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.39 2.41 9.06 45.56 0.41 2.82 16 40 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -34.58 341.25 -6.61 -41.19 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.61 Total: 1.60 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.32 Total: -5.73 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.34 Total: -37.85 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.18 Total: -19.10 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.58 -6.61 -41.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578961093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.705 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds