Wall clock time and date at job start Tue Mar 31 2020 08:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.46498 * 120.00239 * 299.72110 * 4 2 1 6 6 C 1.50702 * 109.47034 * 90.00162 * 5 4 2 7 7 H 1.08002 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00392 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99817 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00435 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46901 * 59.99876 * 10 8 6 12 12 H 1.48504 * 109.47325 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47092 * 299.99902 * 10 8 6 14 14 C 1.34777 * 119.99873 * 120.00305 * 4 2 1 15 15 O 1.21283 * 120.00222 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99772 * 359.97438 * 14 4 2 17 17 C 1.50701 * 109.46837 * 180.02562 * 16 14 4 18 18 C 1.38262 * 119.94034 * 269.72456 * 17 16 14 19 19 C 1.38180 * 120.09704 * 179.76674 * 18 17 16 20 20 C 1.38664 * 119.97016 * 0.51052 * 19 18 17 21 21 O 1.35948 * 120.06381 * 179.72119 * 20 19 18 22 22 C 1.38913 * 119.87238 * 359.74576 * 20 19 18 23 23 F 1.35100 * 120.04583 * 179.97438 * 22 20 19 24 24 C 1.38266 * 119.93593 * 90.00435 * 17 16 14 25 25 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 26 26 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 27 27 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 29 29 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 31 31 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 32 32 H 1.08993 * 109.47575 * 210.00600 * 5 4 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 5 4 2 34 34 H 0.96996 * 120.00179 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47685 * 300.00183 * 16 14 4 36 36 H 1.08997 * 109.47517 * 60.00530 * 16 14 4 37 37 H 1.07997 * 119.94554 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.01601 * 180.24992 * 19 18 17 39 39 H 0.96703 * 114.00391 * 270.02143 * 21 20 19 40 40 H 1.08004 * 119.98220 * 359.95051 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6693 -0.1865 2.5268 6 6 0.3863 -0.8293 2.9870 7 1 -0.1184 -1.5424 2.3520 8 6 -0.1432 -0.5072 4.2186 9 7 0.4717 0.3608 4.9920 10 14 -1.7331 -1.3045 4.7893 11 1 -1.5542 -2.7775 4.8499 12 1 -2.0869 -0.7934 6.1380 13 1 -2.8218 -0.9769 3.8340 14 6 2.7931 -1.7864 1.0727 15 8 3.1977 -2.3579 2.0630 16 6 3.1567 -2.3016 -0.2960 17 6 4.0227 -3.5271 -0.1576 18 6 5.3981 -3.3974 -0.1002 19 6 6.1949 -4.5186 0.0315 20 6 5.6154 -5.7767 0.0956 21 8 6.3979 -6.8814 0.2195 22 6 4.2337 -5.9060 0.0325 23 9 3.6654 -7.1301 0.0941 24 6 3.4407 -4.7797 -0.0941 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.4683 -0.4276 3.2278 33 1 1.5385 0.8948 2.4829 34 1 0.0995 0.5872 5.8586 35 1 2.2483 -2.5587 -0.8407 36 1 3.7016 -1.5310 -0.8413 37 1 5.8499 -2.4180 -0.1542 38 1 7.2688 -4.4154 0.0803 39 1 6.6706 -7.2670 -0.6244 40 1 2.3663 -4.8787 -0.1429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578961093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:45 Heat of formation + Delta-G solvation = -127.624608 kcal Electronic energy + Delta-G solvation = -23827.513840 eV Core-core repulsion = 20134.907305 eV Total energy + Delta-G solvation = -3692.606536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95560 -41.16704 -40.20282 -38.07034 -37.34957 -34.94471 -33.06757 -32.36534 -31.65594 -29.75898 -28.01670 -27.64858 -24.89863 -23.99425 -23.06913 -22.40239 -19.70037 -19.54517 -18.58602 -18.17752 -17.97352 -17.76204 -17.02919 -16.85025 -16.23220 -16.13958 -15.92595 -15.04930 -14.93813 -14.79969 -14.75189 -14.52506 -14.34133 -13.91292 -13.47032 -13.33919 -13.25374 -12.93979 -12.81047 -12.73980 -12.64391 -12.59618 -12.43126 -12.17188 -12.06277 -11.64112 -11.59405 -11.48506 -10.60267 -10.58732 -9.92661 -9.50958 -9.37244 -8.18369 -6.29656 0.00790 0.15129 1.34940 1.39008 1.45396 1.89573 2.23854 2.39524 2.64572 2.95976 3.11620 3.30688 3.59326 3.77093 3.87558 4.07612 4.21248 4.22383 4.34334 4.46238 4.48311 4.57761 4.78791 4.89152 4.92417 4.96822 5.02073 5.07679 5.10690 5.16243 5.17529 5.28550 5.45923 5.48976 5.62164 5.67531 5.75837 5.93131 6.13816 6.71646 6.76817 6.89387 7.34090 7.56347 8.88531 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.004311 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.291273 B = 6493.983342 C = 7391.824389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 C -0.157 4.157 4 N -0.597 5.597 5 C 0.265 3.735 6 C -0.524 4.524 7 H 0.053 0.947 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.282 1.282 12 H -0.281 1.281 13 H -0.260 1.260 14 C 0.496 3.504 15 O -0.595 6.595 16 C -0.092 4.092 17 C -0.049 4.049 18 C -0.099 4.099 19 C -0.114 4.114 20 C 0.065 3.935 21 O -0.500 6.500 22 C 0.047 3.953 23 F -0.147 7.147 24 C -0.138 4.138 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.034 0.966 32 H -0.010 1.010 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.411 0.589 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 -4.345 -19.825 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 C -0.215 4.215 4 N -0.328 5.328 5 C 0.143 3.857 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.208 1.208 12 H -0.206 1.206 13 H -0.184 1.184 14 C 0.285 3.715 15 O -0.476 6.476 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.117 4.117 19 C -0.132 4.132 20 C 0.020 3.980 21 O -0.313 6.313 22 C 0.027 3.973 23 F -0.126 7.126 24 C -0.157 4.157 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.270 0.730 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.505 -4.478 -18.556 20.898 hybrid contribution -1.073 -0.785 0.829 1.567 sum 7.432 -5.263 -17.728 19.930 Atomic orbital electron populations 1.22098 0.95131 1.01657 1.02307 1.21467 0.94933 0.94175 0.87258 1.22128 1.01376 0.95385 1.02627 1.48367 1.48732 1.27492 1.08212 1.18607 0.93758 0.93832 0.79480 1.21653 1.07988 1.24454 1.02203 0.92835 1.25762 1.00955 0.95821 0.96640 1.70040 1.41106 1.34772 1.11160 0.85634 0.80048 0.78310 0.77830 1.20822 1.20645 1.18402 1.21219 0.78211 0.80131 0.91956 1.90686 1.56168 1.58522 1.42189 1.20805 1.02076 0.96405 0.93827 1.19402 0.94538 0.93041 0.97980 1.21306 0.92312 1.00030 0.98032 1.21541 1.02211 0.90075 0.99382 1.18558 0.87059 0.88519 1.03890 1.84834 1.68259 1.41617 1.36566 1.18311 0.91779 0.80381 1.06795 1.91443 1.85416 1.41521 1.94175 1.21084 1.00749 0.91380 1.02440 0.94131 0.89188 0.93779 0.85890 0.92062 0.88515 0.94704 0.99176 0.95643 0.92705 0.85618 0.83890 0.82567 0.81696 0.72981 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.48 71.98 0.61 -3.91 16 2 C 0.12 3.42 3.17 44.99 0.14 3.57 16 3 C -0.16 -3.90 9.17 71.98 0.66 -3.24 16 4 N -0.60 -23.69 2.39 -802.15 -1.91 -25.60 16 5 C 0.26 13.93 4.61 85.63 0.39 14.33 16 6 C -0.52 -29.68 7.83 25.60 0.20 -29.48 16 7 H 0.05 3.00 7.63 -2.91 -0.02 2.97 16 8 C 0.01 0.38 5.46 84.65 0.46 0.84 16 9 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.50 19.28 7.67 87.66 0.67 19.96 16 15 O -0.59 -30.28 15.61 -3.04 -0.05 -30.33 16 16 C -0.09 -2.20 4.14 29.10 0.12 -2.08 16 17 C -0.05 -1.28 4.37 -19.85 -0.09 -1.36 16 18 C -0.10 -2.22 9.69 22.26 0.22 -2.00 16 19 C -0.11 -2.44 9.99 22.36 0.22 -2.22 16 20 C 0.07 1.65 6.71 22.53 0.15 1.80 16 21 O -0.50 -10.99 13.37 -92.97 -1.24 -12.23 16 22 C 0.05 1.37 7.31 22.45 0.16 1.53 16 23 F -0.15 -4.55 17.11 44.97 0.77 -3.78 16 24 C -0.14 -3.94 9.67 22.30 0.22 -3.72 16 25 H 0.04 1.52 6.92 -2.38 -0.02 1.50 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.12 2.26 5.77 -2.39 -0.01 2.25 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.10 6.65 -2.39 -0.02 1.08 16 32 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 33 H 0.03 1.37 6.41 -2.39 -0.02 1.36 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.13 2.39 7.73 -2.39 -0.02 2.37 16 36 H 0.14 2.21 7.73 -2.39 -0.02 2.19 16 37 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.41 4.33 9.06 -74.06 -0.67 3.66 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -80.83 341.25 4.41 -76.42 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.39 Total: 10.37 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.15 Total: -5.99 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.63 Total: -81.98 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.29 Total: -42.56 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.77 Total: -3.78 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -80.83 4.41 -76.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578961093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.209 kcal (2) G-P(sol) polarization free energy of solvation -80.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds