Wall clock time and date at job start Tue Mar 31 2020 08:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46723 * 2 1 4 4 H 1.09006 * 109.47042 * 174.09125 * 3 2 1 5 5 C 1.50700 * 109.47185 * 54.09134 * 3 2 1 6 6 H 1.08005 * 119.99988 * 239.99341 * 5 3 2 7 7 C 1.37875 * 120.00230 * 59.99883 * 5 3 2 8 8 N 1.31517 * 119.99816 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00202 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46745 * 120.00056 * 9 7 5 12 12 H 1.48499 * 109.47048 * 239.99738 * 9 7 5 13 13 N 1.46902 * 109.47569 * 294.08896 * 3 2 1 14 14 C 1.46895 * 110.99946 * 275.76587 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.23362 * 14 13 3 16 16 C 1.38131 * 119.98780 * 259.99652 * 15 14 13 17 17 C 1.38432 * 120.00893 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.98681 * 180.09585 * 17 16 15 19 19 C 1.38446 * 120.03127 * 0.06538 * 17 16 15 20 20 C 1.38221 * 120.08646 * 359.94487 * 19 17 16 21 21 C 1.38620 * 119.93955 * 359.68978 * 20 19 17 22 22 O 1.36030 * 120.52284 * 180.11714 * 21 20 19 23 23 C 1.43040 * 116.91375 * 343.78645 * 22 21 20 24 24 O 1.43263 * 108.60807 * 47.25704 * 23 22 21 25 25 C 1.43080 * 113.03885 * 294.54380 * 24 23 22 26 26 H 1.08996 * 109.47530 * 58.55767 * 1 2 3 27 27 H 1.09006 * 109.47063 * 298.55721 * 1 2 3 28 28 H 1.09003 * 109.46951 * 178.56345 * 1 2 3 29 29 H 1.08994 * 109.47141 * 119.99785 * 2 1 3 30 30 H 1.08996 * 109.46993 * 240.00555 * 2 1 3 31 31 H 0.97000 * 119.99833 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99544 * 39.71315 * 13 3 2 33 33 H 1.09002 * 109.47243 * 296.23133 * 14 13 3 34 34 H 1.09001 * 109.47481 * 56.23102 * 14 13 3 35 35 H 1.08004 * 119.99897 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.95608 * 179.97438 * 19 17 16 37 37 H 1.09002 * 109.61801 * 287.52207 * 23 22 21 38 38 H 1.09003 * 109.61645 * 166.99503 * 23 22 21 39 39 H 1.09001 * 109.49547 * 288.64306 * 25 24 23 40 40 H 1.08993 * 109.52347 * 168.56026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0671 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3704 0.7037 2.6750 9 14 0.8651 2.6984 3.8714 10 1 0.0851 3.8491 3.3492 11 1 -0.0362 1.7923 4.6275 12 1 1.9373 3.1941 4.7714 13 7 1.6702 2.0927 -1.2644 14 6 2.6512 1.7943 -2.3163 15 6 2.1918 2.3995 -3.6178 16 6 1.5724 1.6090 -4.5662 17 6 1.1508 2.1643 -5.7621 18 9 0.5433 1.3911 -6.6885 19 6 1.3508 3.5118 -6.0089 20 6 1.9705 4.3052 -5.0618 21 6 2.3863 3.7520 -3.8608 22 8 2.9953 4.5223 -2.9194 23 6 3.4989 5.7908 -3.3476 24 8 2.4860 6.4481 -4.1187 25 6 2.1864 5.7708 -5.3429 26 1 -0.3634 0.5360 -0.8767 27 1 -0.3633 0.4913 0.9027 28 1 -0.3633 -1.0274 -0.0258 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.5172 0.4030 3.5855 32 1 0.7405 1.8246 -1.5504 33 1 3.6183 2.2153 -2.0412 34 1 2.7443 0.7143 -2.4306 35 1 1.4178 0.5573 -4.3750 36 1 1.0217 3.9437 -6.9425 37 1 4.3878 5.6436 -3.9610 38 1 3.7482 6.3982 -2.4775 39 1 3.0182 5.8895 -6.0373 40 1 1.2829 6.1941 -5.7817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584061153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:20 Heat of formation + Delta-G solvation = -104.393897 kcal Electronic energy + Delta-G solvation = -24124.030245 eV Core-core repulsion = 20432.431069 eV Total energy + Delta-G solvation = -3691.599176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.84034 -40.97876 -38.09514 -36.53100 -36.25776 -33.29506 -31.72800 -30.77223 -29.52692 -26.67652 -26.60264 -25.86410 -24.53324 -23.17569 -21.52208 -20.96947 -19.25671 -18.59003 -17.52377 -17.32172 -16.29025 -15.98071 -15.71243 -15.38429 -15.20877 -14.77971 -14.58117 -14.36865 -14.25926 -13.65906 -13.56843 -13.13644 -12.83694 -12.75098 -12.30911 -12.18598 -12.08029 -11.71257 -11.59549 -11.04550 -10.91872 -10.83179 -10.65296 -10.48614 -10.30042 -9.94794 -9.79156 -9.52999 -8.98133 -8.88247 -8.31103 -8.06194 -7.15736 -5.93888 -3.94502 1.00747 1.17522 3.12562 3.34259 3.40271 3.42480 3.48335 3.54546 4.08559 4.44916 4.49523 4.52796 4.64088 4.93056 5.03922 5.10887 5.17023 5.31139 5.38191 5.51062 5.52539 5.64781 5.89247 5.95254 6.05312 6.28196 6.36422 6.37395 6.42997 6.53236 6.60254 6.69944 6.91545 7.28570 7.31151 7.36498 7.52864 7.72368 7.93658 8.31247 8.57417 8.65821 9.11719 9.68913 11.13388 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.004584 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.794401 B = 6107.014665 C = 7306.669726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.105 3.895 15 C -0.069 4.069 16 C -0.113 4.113 17 C 0.064 3.936 18 F -0.143 7.143 19 C -0.116 4.116 20 C -0.186 4.186 21 C 0.152 3.848 22 O -0.299 6.299 23 C 0.220 3.780 24 O -0.386 6.386 25 C 0.106 3.894 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.326 0.674 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 5.990 -17.308 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.302 5.302 14 C -0.025 4.025 15 C -0.070 4.070 16 C -0.133 4.133 17 C 0.044 3.956 18 F -0.122 7.122 19 C -0.135 4.135 20 C -0.188 4.188 21 C 0.105 3.895 22 O -0.213 6.213 23 C 0.107 3.893 24 O -0.305 6.305 25 C 0.030 3.970 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.090 0.910 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.903 6.615 -16.734 18.094 hybrid contribution -0.621 -0.828 0.180 1.051 sum 1.282 5.786 -16.553 17.582 Atomic orbital electron populations 1.21568 0.97678 0.97962 1.01301 1.22118 0.95049 1.01209 1.00181 1.19225 0.96151 0.88534 0.85256 0.94830 1.21092 1.30147 1.11362 0.89625 0.91973 1.24899 0.95634 0.95198 0.98661 1.69896 1.39465 1.24268 1.20135 0.86528 0.79005 0.79943 0.82478 1.19757 1.21313 1.21234 1.60923 1.03458 1.63082 1.02783 1.20750 0.97895 0.96359 0.87459 1.19441 0.99953 0.90223 0.97372 1.20966 0.99099 1.01130 0.92086 1.17387 1.00849 0.89044 0.88278 1.91476 1.81183 1.74851 1.64647 1.20540 1.00961 0.91932 1.00075 1.20082 1.05530 0.97467 0.95683 1.18306 0.93855 0.90048 0.87261 1.86514 1.70793 1.29184 1.34816 1.24535 0.88017 0.80900 0.95852 1.88297 1.59028 1.49715 1.33456 1.21475 1.02147 0.87040 0.86350 0.95189 0.91510 0.95932 0.88917 0.97118 0.93256 0.85616 0.90265 0.95160 0.84144 0.84582 0.92279 0.83865 0.91048 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.39 16 2 C -0.15 -3.39 5.50 -26.73 -0.15 -3.54 16 3 C 0.22 5.30 2.33 -68.86 -0.16 5.14 16 4 H 0.03 0.91 7.86 -51.93 -0.41 0.51 16 5 C -0.48 -13.11 7.35 -34.44 -0.25 -13.36 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -25.27 11.39 55.43 0.63 -24.64 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.67 -14.32 6.24 -109.22 -0.68 -15.00 16 14 C 0.10 1.89 5.25 -4.98 -0.03 1.86 16 15 C -0.07 -1.08 5.37 -104.46 -0.56 -1.65 16 16 C -0.11 -1.60 9.64 -39.55 -0.38 -1.98 16 17 C 0.06 0.84 7.30 -39.43 -0.29 0.55 16 18 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 19 C -0.12 -1.35 9.69 -39.51 -0.38 -1.73 16 20 C -0.19 -2.35 5.82 -104.45 -0.61 -2.96 16 21 C 0.15 2.33 6.54 -39.24 -0.26 2.07 16 22 O -0.30 -4.79 9.67 -43.72 -0.42 -5.21 16 23 C 0.22 2.56 7.95 101.05 0.80 3.37 16 24 O -0.39 -4.78 10.97 -59.11 -0.65 -5.43 16 25 C 0.11 1.07 6.87 36.05 0.25 1.31 16 26 H 0.03 0.59 6.42 -51.93 -0.33 0.25 16 27 H 0.07 1.57 7.05 -51.93 -0.37 1.21 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.42 6.25 -51.93 -0.32 2.10 16 30 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.33 6.78 6.55 -39.29 -0.26 6.52 16 33 H 0.08 1.49 7.82 -51.93 -0.41 1.08 16 34 H 0.03 0.53 7.09 -51.93 -0.37 0.16 16 35 H 0.14 1.81 8.04 -52.48 -0.42 1.39 16 36 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.14 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -29.90 329.80 -8.23 -38.13 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.34 Total: 4.43 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.76 Total: -11.85 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.05 Total: -39.64 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.07 Total: -10.64 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.90 -8.23 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584061153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.259 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds