Wall clock time and date at job start Tue Mar 31 2020 08:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46723 * 2 1 4 4 H 1.09006 * 109.47042 * 174.09125 * 3 2 1 5 5 C 1.50700 * 109.47185 * 54.09134 * 3 2 1 6 6 H 1.08005 * 119.99988 * 239.99341 * 5 3 2 7 7 C 1.37875 * 120.00230 * 59.99883 * 5 3 2 8 8 N 1.31517 * 119.99816 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00202 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46745 * 120.00056 * 9 7 5 12 12 H 1.48499 * 109.47048 * 239.99738 * 9 7 5 13 13 N 1.46902 * 109.47569 * 294.08896 * 3 2 1 14 14 C 1.46895 * 110.99946 * 275.76587 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.23362 * 14 13 3 16 16 C 1.38131 * 119.98780 * 259.99652 * 15 14 13 17 17 C 1.38432 * 120.00893 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.98681 * 180.09585 * 17 16 15 19 19 C 1.38446 * 120.03127 * 0.06538 * 17 16 15 20 20 C 1.38221 * 120.08646 * 359.94487 * 19 17 16 21 21 C 1.38620 * 119.93955 * 359.68978 * 20 19 17 22 22 O 1.36030 * 120.52284 * 180.11714 * 21 20 19 23 23 C 1.43040 * 116.91375 * 343.78645 * 22 21 20 24 24 O 1.43263 * 108.60807 * 47.25704 * 23 22 21 25 25 C 1.43080 * 113.03885 * 294.54380 * 24 23 22 26 26 H 1.08996 * 109.47530 * 58.55767 * 1 2 3 27 27 H 1.09006 * 109.47063 * 298.55721 * 1 2 3 28 28 H 1.09003 * 109.46951 * 178.56345 * 1 2 3 29 29 H 1.08994 * 109.47141 * 119.99785 * 2 1 3 30 30 H 1.08996 * 109.46993 * 240.00555 * 2 1 3 31 31 H 0.97000 * 119.99833 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99544 * 39.71315 * 13 3 2 33 33 H 1.09002 * 109.47243 * 296.23133 * 14 13 3 34 34 H 1.09001 * 109.47481 * 56.23102 * 14 13 3 35 35 H 1.08004 * 119.99897 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.95608 * 179.97438 * 19 17 16 37 37 H 1.09002 * 109.61801 * 287.52207 * 23 22 21 38 38 H 1.09003 * 109.61645 * 166.99503 * 23 22 21 39 39 H 1.09001 * 109.49547 * 288.64306 * 25 24 23 40 40 H 1.08993 * 109.52347 * 168.56026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0671 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3704 0.7037 2.6750 9 14 0.8651 2.6984 3.8714 10 1 0.0851 3.8491 3.3492 11 1 -0.0362 1.7923 4.6275 12 1 1.9373 3.1941 4.7714 13 7 1.6702 2.0927 -1.2644 14 6 2.6512 1.7943 -2.3163 15 6 2.1918 2.3995 -3.6178 16 6 1.5724 1.6090 -4.5662 17 6 1.1508 2.1643 -5.7621 18 9 0.5433 1.3911 -6.6885 19 6 1.3508 3.5118 -6.0089 20 6 1.9705 4.3052 -5.0618 21 6 2.3863 3.7520 -3.8608 22 8 2.9953 4.5223 -2.9194 23 6 3.4989 5.7908 -3.3476 24 8 2.4860 6.4481 -4.1187 25 6 2.1864 5.7708 -5.3429 26 1 -0.3634 0.5360 -0.8767 27 1 -0.3633 0.4913 0.9027 28 1 -0.3633 -1.0274 -0.0258 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.5172 0.4030 3.5855 32 1 0.7405 1.8246 -1.5504 33 1 3.6183 2.2153 -2.0412 34 1 2.7443 0.7143 -2.4306 35 1 1.4178 0.5573 -4.3750 36 1 1.0217 3.9437 -6.9425 37 1 4.3878 5.6436 -3.9610 38 1 3.7482 6.3982 -2.4775 39 1 3.0182 5.8895 -6.0373 40 1 1.2829 6.1941 -5.7817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584061153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:19 Heat of formation + Delta-G solvation = -123.104128 kcal Electronic energy + Delta-G solvation = -24124.841582 eV Core-core repulsion = 20432.431069 eV Total energy + Delta-G solvation = -3692.410513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.85716 -41.97387 -39.21467 -38.06658 -37.37850 -34.88120 -33.34906 -32.11191 -30.87543 -28.44164 -27.53962 -26.83378 -26.10962 -25.02289 -22.62560 -22.03738 -21.15430 -19.58373 -18.62846 -18.40403 -17.92508 -17.20090 -16.79571 -16.66603 -16.32214 -16.26306 -16.01513 -15.50270 -15.33936 -15.15196 -14.84813 -14.44857 -14.37007 -14.11939 -13.88885 -13.67946 -13.21734 -13.04396 -12.97568 -12.81635 -12.53748 -12.43432 -12.05809 -11.93425 -11.74071 -11.64245 -11.41034 -11.19323 -10.94392 -10.42004 -9.94627 -9.13057 -8.88397 -8.03845 -6.11458 -0.00754 0.12273 1.41869 1.44718 1.56252 2.17430 2.38558 2.48242 2.67021 3.11946 3.25060 3.44624 3.55434 3.81462 3.88608 4.00054 4.13111 4.30326 4.35724 4.41401 4.50186 4.53588 4.54602 4.61688 4.64926 4.75921 4.88720 4.96794 5.06362 5.11072 5.23716 5.38842 5.43875 5.59524 5.69386 5.74836 5.75846 5.85175 6.32407 6.36252 6.69652 6.84643 7.00530 7.55977 9.01807 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.004584 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.794401 B = 6107.014665 C = 7306.669726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.676 5.676 14 C 0.113 3.887 15 C -0.091 4.091 16 C -0.116 4.116 17 C 0.057 3.943 18 F -0.142 7.142 19 C -0.100 4.100 20 C -0.183 4.183 21 C 0.132 3.868 22 O -0.333 6.333 23 C 0.212 3.788 24 O -0.402 6.402 25 C 0.101 3.899 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.146 0.854 36 H 0.173 0.827 37 H 0.086 0.914 38 H 0.154 0.846 39 H 0.103 0.897 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 7.032 -19.326 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.534 4.534 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.307 5.307 14 C -0.016 4.016 15 C -0.092 4.092 16 C -0.135 4.135 17 C 0.038 3.962 18 F -0.121 7.121 19 C -0.118 4.118 20 C -0.185 4.185 21 C 0.086 3.914 22 O -0.248 6.248 23 C 0.100 3.900 24 O -0.321 6.321 25 C 0.026 3.974 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.045 7.664 -18.772 20.303 hybrid contribution -0.319 -1.113 0.710 1.358 sum 0.725 6.551 -18.063 19.228 Atomic orbital electron populations 1.21450 0.96051 0.99318 1.00778 1.21955 0.96417 0.99960 0.99480 1.18955 0.93745 0.89472 0.86378 0.98367 1.21258 1.30096 1.11148 0.90911 0.93398 1.25552 0.96024 0.95923 1.00814 1.70016 1.40280 1.25271 1.20556 0.85624 0.78249 0.78810 0.79648 1.19656 1.20700 1.20934 1.60759 1.04281 1.62952 1.02704 1.20581 0.96419 0.96607 0.87949 1.19210 1.02277 0.91057 0.96700 1.20999 0.98845 1.01347 0.92295 1.17467 1.01009 0.89770 0.87945 1.91480 1.81174 1.75004 1.64464 1.20904 0.98973 0.91040 1.00929 1.20413 1.04454 0.99069 0.94523 1.18560 0.94527 0.89968 0.88358 1.86462 1.71271 1.30817 1.36289 1.24875 0.88513 0.79626 0.96998 1.88270 1.59322 1.50045 1.34490 1.21824 1.04489 0.85057 0.86026 0.93538 0.93987 0.93718 0.91908 0.95387 0.93230 0.85258 0.91911 0.94832 0.83591 0.80948 0.89657 0.82898 0.87963 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.39 71.98 0.68 -4.35 16 2 C -0.14 -6.52 5.50 30.60 0.17 -6.35 16 3 C 0.22 11.31 2.33 44.17 0.10 11.41 16 4 H 0.00 -0.09 7.86 -2.38 -0.02 -0.11 16 5 C -0.50 -27.54 7.35 25.60 0.19 -27.35 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.82 5.22 84.65 0.44 1.27 16 8 N -0.92 -52.95 11.39 21.45 0.24 -52.71 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.68 -29.51 6.24 -499.45 -3.12 -32.62 16 14 C 0.11 4.22 5.25 85.56 0.45 4.67 16 15 C -0.09 -2.87 5.37 -19.76 -0.11 -2.98 16 16 C -0.12 -3.14 9.64 22.29 0.21 -2.92 16 17 C 0.06 1.38 7.30 22.37 0.16 1.54 16 18 F -0.14 -3.42 17.27 44.97 0.78 -2.65 16 19 C -0.10 -1.99 9.69 22.32 0.22 -1.77 16 20 C -0.18 -4.16 5.82 -19.75 -0.11 -4.27 16 21 C 0.13 3.96 6.54 22.49 0.15 4.11 16 22 O -0.33 -10.71 9.67 -71.06 -0.69 -11.40 16 23 C 0.21 4.71 7.95 113.37 0.90 5.62 16 24 O -0.40 -9.11 10.97 -126.14 -1.38 -10.49 16 25 C 0.10 1.69 6.87 71.26 0.49 2.17 16 26 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 27 H 0.04 1.97 7.05 -2.38 -0.02 1.95 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 3.35 6.25 -2.39 -0.01 3.34 16 30 H 0.03 1.19 7.24 -2.39 -0.02 1.17 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.33 13.79 6.55 -89.69 -0.59 13.20 16 33 H 0.06 2.49 7.82 -2.39 -0.02 2.48 16 34 H 0.03 1.20 7.09 -2.39 -0.02 1.19 16 35 H 0.15 3.65 8.04 -2.91 -0.02 3.63 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.70 329.80 2.27 -63.43 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.48 Total: 19.09 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 3.94 Total: -19.21 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.87 Total: -85.33 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -2.07 Total: -21.89 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.70 2.27 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584061153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.674 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds