Wall clock time and date at job start Tue Mar 31 2020 08:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47493 * 2 1 4 4 H 1.08996 * 109.47096 * 54.53070 * 3 2 1 5 5 C 1.50699 * 109.46992 * 174.53882 * 3 2 1 6 6 H 1.08000 * 120.00465 * 120.00081 * 5 3 2 7 7 C 1.37884 * 119.99730 * 299.71878 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.28169 * 7 5 3 9 9 Si 1.86799 * 120.00005 * 180.27855 * 7 5 3 10 10 H 1.48507 * 109.46971 * 60.00016 * 9 7 5 11 11 H 1.48494 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47162 * 300.00714 * 9 7 5 13 13 N 1.46902 * 109.46867 * 294.53222 * 3 2 1 14 14 C 1.46902 * 110.99815 * 154.48844 * 13 3 2 15 15 C 1.50703 * 109.47286 * 185.10493 * 14 13 3 16 16 C 1.38143 * 119.98306 * 259.99759 * 15 14 13 17 17 C 1.38425 * 120.00047 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.98164 * 180.02562 * 17 16 15 19 19 C 1.38442 * 120.03913 * 0.05223 * 17 16 15 20 20 C 1.38219 * 120.08396 * 0.02562 * 19 17 16 21 21 C 1.38618 * 119.93950 * 359.61171 * 20 19 17 22 22 O 1.36034 * 120.53198 * 180.62878 * 21 20 19 23 23 C 1.43046 * 116.83144 * 343.41819 * 22 21 20 24 24 O 1.43259 * 108.60797 * 47.55525 * 23 22 21 25 25 C 1.43379 * 112.75465 * 294.21674 * 24 23 22 26 26 H 1.08997 * 109.47830 * 175.41001 * 1 2 3 27 27 H 1.09008 * 109.46621 * 295.40829 * 1 2 3 28 28 H 1.08997 * 109.47008 * 55.39889 * 1 2 3 29 29 H 1.09004 * 109.46603 * 239.99952 * 2 1 3 30 30 H 1.09003 * 109.46900 * 120.00473 * 2 1 3 31 31 H 0.96996 * 119.99458 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00603 * 278.43782 * 13 3 2 33 33 H 1.09002 * 109.46898 * 305.10075 * 14 13 3 34 34 H 1.08996 * 109.47638 * 65.09711 * 14 13 3 35 35 H 1.07999 * 119.99839 * 359.95470 * 16 15 14 36 36 H 1.08003 * 119.95757 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.61149 * 167.28753 * 23 22 21 38 38 H 1.08998 * 109.61622 * 287.63406 * 23 22 21 39 39 H 1.08988 * 110.07040 * 288.84153 * 25 24 23 40 40 H 1.09001 * 109.02695 * 168.68779 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5990 1.9838 0.8369 5 6 3.5410 1.4444 0.1352 6 1 4.1522 1.8869 -0.6374 7 6 4.1336 0.8866 1.2482 8 7 3.3893 0.3478 2.1891 9 14 5.9937 0.8960 1.4196 10 1 6.4840 2.2978 1.4167 11 1 6.3766 0.2398 2.6955 12 1 6.5993 0.1575 0.2824 13 7 1.6611 2.0957 -1.2600 14 6 1.5693 3.5521 -1.0910 15 6 1.0587 4.1745 -2.3650 16 6 1.9429 4.7626 -3.2486 17 6 1.4744 5.3340 -4.4191 18 9 2.3394 5.9086 -5.2833 19 6 0.1198 5.3174 -4.7046 20 6 -0.7673 4.7311 -3.8216 21 6 -0.2987 4.1520 -2.6526 22 8 -1.1596 3.5604 -1.7811 23 6 -2.5468 3.8765 -1.9291 24 8 -2.8983 3.7556 -3.3126 25 6 -2.2414 4.7262 -4.1385 26 1 -0.3634 -1.0243 -0.0822 27 1 -0.3633 0.4410 0.9284 28 1 -0.3633 0.5836 -0.8459 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8062 -0.0449 2.9719 32 1 2.3055 1.8575 -1.9990 33 1 0.8837 3.7806 -0.2749 34 1 2.5557 3.9541 -0.8600 35 1 2.9996 4.7769 -3.0259 36 1 -0.2443 5.7632 -5.6185 37 1 -3.1451 3.1834 -1.3376 38 1 -2.7277 4.8967 -1.5906 39 1 -2.6566 5.7168 -3.9538 40 1 -2.3876 4.4594 -5.1852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584061154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:22 Heat of formation + Delta-G solvation = -109.642444 kcal Electronic energy + Delta-G solvation = -24154.500249 eV Core-core repulsion = 20462.673478 eV Total energy + Delta-G solvation = -3691.826770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.79451 -40.94742 -38.01911 -36.45222 -36.00476 -33.22138 -31.75348 -30.94384 -29.74014 -26.72089 -26.58566 -25.86584 -24.54517 -22.51833 -21.43642 -20.79722 -19.45869 -18.55511 -17.50801 -17.23615 -16.57168 -16.18301 -15.68592 -15.35841 -15.15832 -14.84234 -14.41721 -14.31968 -14.07115 -13.76982 -13.38414 -13.23510 -13.01212 -12.54255 -12.20616 -12.08908 -11.84668 -11.66783 -11.27286 -11.12365 -10.95848 -10.86167 -10.74388 -10.62054 -10.30604 -10.12332 -9.56250 -9.49361 -9.05492 -8.85186 -8.36568 -8.02540 -7.22653 -5.98704 -4.12081 1.06067 1.22076 3.14952 3.28302 3.33730 3.36071 3.42346 3.56878 4.11850 4.39657 4.50873 4.56107 4.64155 4.97870 5.05002 5.10785 5.19798 5.27023 5.31013 5.57110 5.62571 5.69642 5.99570 6.02766 6.13775 6.40858 6.42561 6.48603 6.59597 6.60917 6.75250 6.79721 7.17404 7.26924 7.36399 7.47709 7.62021 7.79809 8.11034 8.15158 8.34103 8.66595 9.00696 9.55513 11.01136 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.004724 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.009464 B = 5925.988912 C = 7350.822363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.033 0.967 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.111 3.889 15 C -0.063 4.063 16 C -0.113 4.113 17 C 0.064 3.936 18 F -0.143 7.143 19 C -0.118 4.118 20 C -0.186 4.186 21 C 0.149 3.851 22 O -0.300 6.300 23 C 0.218 3.782 24 O -0.385 6.385 25 C 0.105 3.895 26 H 0.022 0.978 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.262 0.738 32 H 0.327 0.673 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 10.287 -10.530 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.018 4.018 15 C -0.065 4.065 16 C -0.132 4.132 17 C 0.045 3.955 18 F -0.122 7.122 19 C -0.137 4.137 20 C -0.188 4.188 21 C 0.102 3.898 22 O -0.215 6.215 23 C 0.105 3.895 24 O -0.304 6.304 25 C 0.029 3.971 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.443 9.821 -10.159 18.182 hybrid contribution 2.284 0.616 -0.018 2.366 sum -9.158 10.436 -10.177 17.215 Atomic orbital electron populations 1.21705 0.98902 0.98364 1.00537 1.21473 0.92239 0.99073 1.01491 1.19133 0.92717 0.91332 0.85815 0.94936 1.21844 0.92826 1.38706 1.05276 0.92947 1.24921 0.97817 0.94959 0.95717 1.69872 1.34841 1.38287 1.09232 0.86727 0.86126 0.78166 0.77366 1.20432 1.21243 1.20297 1.60894 1.55024 1.04424 1.10260 1.20603 0.98986 0.90622 0.91619 1.19528 0.89848 0.98760 0.98334 1.21007 1.00953 0.98694 0.92552 1.17412 0.87163 1.00892 0.90045 1.91476 1.69325 1.82706 1.68703 1.20519 0.91103 1.01835 1.00288 1.20052 0.97322 1.05408 0.95975 1.18302 0.89932 0.93145 0.88379 1.86498 1.17248 1.65350 1.52396 1.24490 0.80385 1.01384 0.83206 1.88380 1.67044 1.55797 1.19210 1.21524 0.86624 0.92741 0.96185 0.95878 0.94665 0.92757 0.95230 0.89269 0.92832 0.85717 0.90532 0.94247 0.84024 0.84680 0.84056 0.92297 0.90929 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.86 37.16 0.37 -2.53 16 2 C -0.10 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.33 1.97 -68.87 -0.14 5.20 16 4 H 0.03 0.88 7.71 -51.93 -0.40 0.48 16 5 C -0.55 -14.55 8.45 -34.44 -0.29 -14.84 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.80 11.30 55.43 0.63 -24.17 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.19 5.60 -109.22 -0.61 -14.80 16 14 C 0.11 2.07 5.28 -4.97 -0.03 2.05 16 15 C -0.06 -1.02 5.45 -104.46 -0.57 -1.59 16 16 C -0.11 -1.65 9.64 -39.55 -0.38 -2.03 16 17 C 0.06 0.87 7.30 -39.44 -0.29 0.58 16 18 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 19 C -0.12 -1.40 9.69 -39.51 -0.38 -1.79 16 20 C -0.19 -2.35 5.82 -104.45 -0.61 -2.96 16 21 C 0.15 2.26 6.53 -39.24 -0.26 2.01 16 22 O -0.30 -4.65 9.68 -43.73 -0.42 -5.08 16 23 C 0.22 2.46 7.93 101.05 0.80 3.26 16 24 O -0.38 -4.63 10.99 -59.11 -0.65 -5.28 16 25 C 0.11 1.05 6.87 36.05 0.25 1.29 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.05 1.13 7.65 -51.93 -0.40 0.73 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.33 6.88 8.46 -39.29 -0.33 6.55 16 33 H 0.08 1.48 7.63 -51.93 -0.40 1.08 16 34 H 0.04 0.76 7.96 -51.93 -0.41 0.34 16 35 H 0.14 1.95 8.04 -52.49 -0.42 1.53 16 36 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.07 0.55 8.14 -51.94 -0.42 0.13 16 40 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -29.29 335.70 -8.34 -37.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.59 Total: 4.85 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.76 Total: -12.24 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.01 Total: -38.98 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.07 Total: -10.36 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.29 -8.34 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584061154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.014 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds