Wall clock time and date at job start Tue Mar 31 2020 08:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47493 * 2 1 4 4 H 1.08996 * 109.47096 * 54.53070 * 3 2 1 5 5 C 1.50699 * 109.46992 * 174.53882 * 3 2 1 6 6 H 1.08000 * 120.00465 * 120.00081 * 5 3 2 7 7 C 1.37884 * 119.99730 * 299.71878 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.28169 * 7 5 3 9 9 Si 1.86799 * 120.00005 * 180.27855 * 7 5 3 10 10 H 1.48507 * 109.46971 * 60.00016 * 9 7 5 11 11 H 1.48494 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47162 * 300.00714 * 9 7 5 13 13 N 1.46902 * 109.46867 * 294.53222 * 3 2 1 14 14 C 1.46902 * 110.99815 * 154.48844 * 13 3 2 15 15 C 1.50703 * 109.47286 * 185.10493 * 14 13 3 16 16 C 1.38143 * 119.98306 * 259.99759 * 15 14 13 17 17 C 1.38425 * 120.00047 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.98164 * 180.02562 * 17 16 15 19 19 C 1.38442 * 120.03913 * 0.05223 * 17 16 15 20 20 C 1.38219 * 120.08396 * 0.02562 * 19 17 16 21 21 C 1.38618 * 119.93950 * 359.61171 * 20 19 17 22 22 O 1.36034 * 120.53198 * 180.62878 * 21 20 19 23 23 C 1.43046 * 116.83144 * 343.41819 * 22 21 20 24 24 O 1.43259 * 108.60797 * 47.55525 * 23 22 21 25 25 C 1.43379 * 112.75465 * 294.21674 * 24 23 22 26 26 H 1.08997 * 109.47830 * 175.41001 * 1 2 3 27 27 H 1.09008 * 109.46621 * 295.40829 * 1 2 3 28 28 H 1.08997 * 109.47008 * 55.39889 * 1 2 3 29 29 H 1.09004 * 109.46603 * 239.99952 * 2 1 3 30 30 H 1.09003 * 109.46900 * 120.00473 * 2 1 3 31 31 H 0.96996 * 119.99458 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00603 * 278.43782 * 13 3 2 33 33 H 1.09002 * 109.46898 * 305.10075 * 14 13 3 34 34 H 1.08996 * 109.47638 * 65.09711 * 14 13 3 35 35 H 1.07999 * 119.99839 * 359.95470 * 16 15 14 36 36 H 1.08003 * 119.95757 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.61149 * 167.28753 * 23 22 21 38 38 H 1.08998 * 109.61622 * 287.63406 * 23 22 21 39 39 H 1.08988 * 110.07040 * 288.84153 * 25 24 23 40 40 H 1.09001 * 109.02695 * 168.68779 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5990 1.9838 0.8369 5 6 3.5410 1.4444 0.1352 6 1 4.1522 1.8869 -0.6374 7 6 4.1336 0.8866 1.2482 8 7 3.3893 0.3478 2.1891 9 14 5.9937 0.8960 1.4196 10 1 6.4840 2.2978 1.4167 11 1 6.3766 0.2398 2.6955 12 1 6.5993 0.1575 0.2824 13 7 1.6611 2.0957 -1.2600 14 6 1.5693 3.5521 -1.0910 15 6 1.0587 4.1745 -2.3650 16 6 1.9429 4.7626 -3.2486 17 6 1.4744 5.3340 -4.4191 18 9 2.3394 5.9086 -5.2833 19 6 0.1198 5.3174 -4.7046 20 6 -0.7673 4.7311 -3.8216 21 6 -0.2987 4.1520 -2.6526 22 8 -1.1596 3.5604 -1.7811 23 6 -2.5468 3.8765 -1.9291 24 8 -2.8983 3.7556 -3.3126 25 6 -2.2414 4.7262 -4.1385 26 1 -0.3634 -1.0243 -0.0822 27 1 -0.3633 0.4410 0.9284 28 1 -0.3633 0.5836 -0.8459 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8062 -0.0449 2.9719 32 1 2.3055 1.8575 -1.9990 33 1 0.8837 3.7806 -0.2749 34 1 2.5557 3.9541 -0.8600 35 1 2.9996 4.7769 -3.0259 36 1 -0.2443 5.7632 -5.6185 37 1 -3.1451 3.1834 -1.3376 38 1 -2.7277 4.8967 -1.5906 39 1 -2.6566 5.7168 -3.9538 40 1 -2.3876 4.4594 -5.1852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584061154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:22 Heat of formation + Delta-G solvation = -127.410636 kcal Electronic energy + Delta-G solvation = -24155.270735 eV Core-core repulsion = 20462.673478 eV Total energy + Delta-G solvation = -3692.597257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.85270 -41.94111 -39.10976 -37.83800 -37.31783 -34.81430 -33.48888 -32.29749 -31.02810 -28.49112 -27.50491 -26.81926 -26.13152 -24.32680 -22.54307 -21.92603 -21.38557 -19.53881 -18.85445 -18.37877 -18.16476 -17.18847 -16.83299 -16.65431 -16.30193 -16.12176 -15.80634 -15.55043 -15.30499 -15.19204 -14.82198 -14.58846 -14.29597 -13.97722 -13.56938 -13.49586 -13.14522 -13.09056 -13.01721 -12.89952 -12.62634 -12.48383 -12.05731 -12.01439 -11.75146 -11.50860 -11.42294 -11.16903 -10.99194 -10.45259 -9.92229 -9.12033 -9.01782 -8.04424 -6.26972 0.01503 0.14369 1.39495 1.40386 1.47741 2.19972 2.39903 2.41826 2.69549 3.13034 3.15590 3.46694 3.58099 3.83121 3.90709 4.02737 4.17434 4.32952 4.37463 4.43588 4.53479 4.59065 4.63290 4.73949 4.80653 4.91400 4.96480 4.99353 5.07946 5.18402 5.30538 5.45137 5.52998 5.60630 5.64486 5.75362 5.79306 6.10671 6.19714 6.34126 6.40490 6.79525 7.00805 7.44377 8.91933 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.004724 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.009464 B = 5925.988912 C = 7350.822363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.100 4.100 3 C 0.226 3.774 4 H 0.000 1.000 5 C -0.562 4.562 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.121 3.879 15 C -0.086 4.086 16 C -0.119 4.119 17 C 0.056 3.944 18 F -0.144 7.144 19 C -0.101 4.101 20 C -0.182 4.182 21 C 0.134 3.866 22 O -0.330 6.330 23 C 0.210 3.790 24 O -0.399 6.399 25 C 0.102 3.898 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.326 0.674 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.140 0.860 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 11.279 -12.434 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.139 4.139 3 C 0.117 3.883 4 H 0.018 0.982 5 C -0.601 4.601 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.297 5.297 14 C -0.008 4.008 15 C -0.087 4.087 16 C -0.138 4.138 17 C 0.037 3.963 18 F -0.123 7.123 19 C -0.119 4.119 20 C -0.183 4.183 21 C 0.088 3.912 22 O -0.246 6.246 23 C 0.098 3.902 24 O -0.318 6.318 25 C 0.026 3.974 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.158 0.842 36 H 0.190 0.810 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.473 10.826 -12.080 20.462 hybrid contribution 2.532 0.359 0.532 2.613 sum -9.940 11.185 -11.548 18.902 Atomic orbital electron populations 1.21534 0.96438 0.99679 1.00370 1.21340 0.94403 0.98328 0.99827 1.18891 0.91600 0.91515 0.86263 0.98186 1.22146 0.94034 1.38553 1.05347 0.93184 1.25647 1.01995 0.94705 0.95489 1.70001 1.36429 1.38853 1.09588 0.85747 0.81086 0.78210 0.77370 1.20014 1.20864 1.19837 1.60814 1.54385 1.06009 1.08509 1.20415 0.98020 0.89151 0.93230 1.19225 0.90952 1.00796 0.97750 1.20995 1.00805 0.98938 0.93086 1.17487 0.88023 1.01113 0.89668 1.91476 1.69561 1.82709 1.68547 1.20889 0.89967 1.00106 1.00986 1.20407 0.99210 1.03991 0.94700 1.18478 0.89569 0.93675 0.89460 1.86453 1.19129 1.65939 1.53035 1.24862 0.78621 1.03294 0.83417 1.88361 1.67100 1.56830 1.19546 1.21863 0.84449 0.94018 0.97040 0.93807 0.95091 0.92501 0.95620 0.92013 0.92861 0.85778 0.91904 0.95596 0.84206 0.80969 0.82683 0.89898 0.87868 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 9.86 71.98 0.71 -4.46 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.78 16 3 C 0.23 11.47 1.97 44.17 0.09 11.55 16 4 H 0.00 0.01 7.71 -2.39 -0.02 -0.01 16 5 C -0.56 -30.64 8.45 25.60 0.22 -30.42 16 6 H 0.05 2.69 7.73 -2.91 -0.02 2.67 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -52.23 11.30 21.45 0.24 -51.99 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.67 -28.92 5.60 -499.46 -2.80 -31.72 16 14 C 0.12 4.72 5.28 85.56 0.45 5.17 16 15 C -0.09 -2.79 5.45 -19.76 -0.11 -2.90 16 16 C -0.12 -3.46 9.64 22.29 0.21 -3.24 16 17 C 0.06 1.43 7.30 22.36 0.16 1.59 16 18 F -0.14 -3.68 17.27 44.97 0.78 -2.91 16 19 C -0.10 -2.06 9.69 22.31 0.22 -1.84 16 20 C -0.18 -4.09 5.82 -19.75 -0.11 -4.20 16 21 C 0.13 3.98 6.53 22.49 0.15 4.12 16 22 O -0.33 -10.08 9.68 -71.10 -0.69 -10.76 16 23 C 0.21 4.36 7.93 113.37 0.90 5.26 16 24 O -0.40 -8.50 10.99 -126.14 -1.39 -9.89 16 25 C 0.10 1.62 6.87 71.26 0.49 2.11 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 2.35 7.65 -2.39 -0.02 2.33 16 29 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 3.40 5.96 -2.39 -0.01 3.39 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 14.12 8.46 -89.70 -0.76 13.36 16 33 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 34 H 0.03 1.05 7.96 -2.39 -0.02 1.03 16 35 H 0.14 3.96 8.04 -2.91 -0.02 3.93 16 36 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.16 2.62 8.14 -2.38 -0.02 2.61 16 38 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.15 335.70 2.46 -61.69 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.30 Total: 20.39 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.99 Total: -20.39 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.56 Total: -83.71 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -2.08 Total: -20.65 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.15 2.46 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584061154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.718 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds