Wall clock time and date at job start Tue Mar 31 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.33387 * 125.20097 * 90.00187 * 3 2 1 5 5 C 1.38429 * 114.91542 * 179.79615 * 4 3 2 6 6 C 1.33384 * 114.92399 * 0.42576 * 5 4 3 7 7 C 1.50703 * 125.20461 * 179.86134 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46958 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00516 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47252 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47262 * 120.00034 * 19 17 15 22 22 H 1.48501 * 109.47152 * 240.00312 * 19 17 15 23 23 S 1.75882 * 109.59298 * 359.59684 * 6 5 4 24 24 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47089 * 299.99879 * 1 2 3 26 26 H 1.08998 * 109.47487 * 60.00070 * 1 2 3 27 27 H 1.09007 * 109.47046 * 239.99960 * 2 1 3 28 28 H 1.08998 * 109.47487 * 119.99930 * 2 1 3 29 29 H 1.07991 * 122.54186 * 0.02562 * 4 3 2 30 30 H 1.07996 * 122.53661 * 180.27352 * 5 4 3 31 31 H 1.09002 * 109.47152 * 329.72078 * 7 6 5 32 32 H 1.09001 * 109.46980 * 209.72179 * 7 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 34 34 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 35 35 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 36 36 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 37 37 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 38 38 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 39 39 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 40 40 H 1.09001 * 109.47142 * 300.00233 * 14 13 12 41 41 H 1.09002 * 109.47097 * 60.00198 * 14 13 12 42 42 H 0.97002 * 120.00201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3247 5.0782 -0.9771 8 7 4.7794 5.0486 -1.1488 9 6 5.4251 6.1359 -1.6148 10 8 4.8022 7.1390 -1.8915 11 6 6.9215 6.1056 -1.7908 12 6 7.3992 7.4560 -2.3284 13 6 8.9186 7.4256 -2.5065 14 6 9.3962 8.7758 -3.0447 15 6 10.8926 8.7455 -3.2208 16 1 11.4473 7.8524 -2.9739 17 6 11.5531 9.8577 -3.6980 18 7 10.8775 10.9451 -3.9990 19 14 13.4079 9.8199 -3.9169 20 1 13.9273 8.4893 -3.5107 21 1 13.7433 10.0676 -5.3421 22 1 14.0276 10.8725 -3.0724 23 16 2.3697 2.3770 -1.4372 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1527 1.7599 2.0894 30 1 2.9962 4.1188 1.6349 31 1 3.0581 5.8650 -0.2714 32 1 2.8494 5.2756 -1.9380 33 1 5.2775 4.2462 -0.9278 34 1 7.3966 5.9089 -0.8297 35 1 7.1885 5.3184 -2.4959 36 1 6.9243 7.6532 -3.2895 37 1 7.1323 8.2429 -1.6230 38 1 9.3932 7.2286 -1.5453 39 1 9.1859 6.6386 -3.2118 40 1 8.9215 8.9723 -4.0061 41 1 9.1288 9.5631 -2.3398 42 1 11.3423 11.7276 -4.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588150999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:21 Heat of formation + Delta-G solvation = -44.244568 kcal Electronic energy + Delta-G solvation = -19735.026228 eV Core-core repulsion = 16612.248498 eV Total energy + Delta-G solvation = -3122.777730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74584 -38.52329 -35.54664 -34.79766 -33.80182 -32.60028 -30.46063 -29.27609 -26.68474 -25.35599 -23.73133 -22.62955 -22.15544 -20.34654 -19.95060 -19.26794 -17.59839 -16.68101 -16.28241 -16.00974 -15.74064 -15.43618 -14.65346 -14.55263 -14.41908 -14.23252 -13.69185 -13.46675 -13.19075 -12.77754 -12.53474 -12.51598 -12.30658 -12.08439 -11.80195 -11.66672 -11.57200 -11.47444 -11.04568 -10.97601 -10.51195 -10.46733 -10.38588 -9.90515 -9.58839 -9.23205 -9.21708 -8.99203 -8.87873 -8.85074 -8.28772 -5.93331 -3.95736 0.49049 1.17426 1.59191 2.26751 2.72940 3.27526 3.34514 3.41643 3.45700 4.20971 4.31882 4.50701 4.55016 4.77218 4.83999 4.94804 4.98455 5.23219 5.24071 5.34097 5.35132 5.40185 5.42223 5.43398 5.44537 5.67154 5.78164 5.84178 5.89316 6.10148 6.17005 6.24503 6.33693 6.57802 6.87075 7.05052 7.22790 7.42366 7.76775 7.92744 8.08349 8.25205 8.50256 9.12255 9.67902 11.17990 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044822 B = 0.001889 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.536999 B =14821.733052 C =15065.600797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.170 4.170 4 C -0.143 4.143 5 C -0.111 4.111 6 C -0.204 4.204 7 C 0.193 3.807 8 N -0.736 5.736 9 C 0.513 3.487 10 O -0.535 6.535 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 S 0.115 5.885 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.599 -24.027 10.478 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.288 4.288 4 C -0.173 4.173 5 C -0.143 4.143 6 C -0.322 4.322 7 C 0.068 3.932 8 N -0.390 5.390 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.381 5.619 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.129 -23.357 8.631 33.312 hybrid contribution 1.315 -0.069 1.536 2.023 sum -20.813 -23.426 10.166 32.944 Atomic orbital electron populations 1.21793 0.94166 1.02106 1.02556 1.20129 0.96289 0.89627 1.03373 1.24639 1.07359 1.00863 0.95940 1.20075 1.03660 0.94156 0.99364 1.20179 1.01195 0.96997 0.95896 1.24458 1.10856 1.00095 0.96783 1.19582 0.81287 0.91089 1.01275 1.46215 1.07176 1.16891 1.68719 1.21144 0.90909 0.82220 0.75687 1.90714 1.69034 1.31971 1.49303 1.21796 0.90156 1.02280 1.03539 1.21457 0.97496 0.93746 1.01442 1.21652 0.91984 1.01097 1.00068 1.19109 0.95556 0.90906 0.96254 1.21328 0.92866 0.98637 1.42958 0.92696 1.25043 0.98223 0.95642 0.95692 1.69986 1.35370 1.03117 1.44974 0.86559 0.85926 0.77939 0.77688 1.19796 1.21069 1.21062 1.84419 1.64119 1.04438 1.08958 0.91935 0.92248 0.92392 0.90700 0.89901 0.84292 0.84065 0.89675 0.90569 0.76441 0.89086 0.89099 0.91792 0.91788 0.93472 0.93480 0.96568 0.96564 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.05 -0.27 6.43 -27.88 -0.18 -0.45 16 3 C -0.17 -1.18 5.76 -36.00 -0.21 -1.38 16 4 C -0.14 -0.98 10.05 -41.21 -0.41 -1.40 16 5 C -0.11 -0.84 10.05 -41.21 -0.41 -1.26 16 6 C -0.20 -1.72 5.88 -36.00 -0.21 -1.93 16 7 C 0.19 1.91 6.16 -5.19 -0.03 1.88 16 8 N -0.74 -7.68 5.55 -61.47 -0.34 -8.02 16 9 C 0.51 7.21 7.83 -10.99 -0.09 7.13 16 10 O -0.53 -9.80 15.98 5.56 0.09 -9.71 16 11 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 12 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 S 0.12 0.91 23.31 -107.50 -2.51 -1.60 16 24 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.40 3.27 8.46 -40.82 -0.35 2.93 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.79 368.62 -10.70 -44.49 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.07 Total: -3.06 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.14 Total: -17.72 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.40 Total: -35.00 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.79 -10.70 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588150999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.250 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds