Wall clock time and date at job start Tue Mar 31 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.33387 * 125.20097 * 90.00187 * 3 2 1 5 5 C 1.38429 * 114.91542 * 179.79615 * 4 3 2 6 6 C 1.33384 * 114.92399 * 0.42576 * 5 4 3 7 7 C 1.50703 * 125.20461 * 179.86134 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.71995 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47452 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46958 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99601 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00516 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47252 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47262 * 120.00034 * 19 17 15 22 22 H 1.48501 * 109.47152 * 240.00312 * 19 17 15 23 23 S 1.75882 * 109.59298 * 359.59684 * 6 5 4 24 24 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47089 * 299.99879 * 1 2 3 26 26 H 1.08998 * 109.47487 * 60.00070 * 1 2 3 27 27 H 1.09007 * 109.47046 * 239.99960 * 2 1 3 28 28 H 1.08998 * 109.47487 * 119.99930 * 2 1 3 29 29 H 1.07991 * 122.54186 * 0.02562 * 4 3 2 30 30 H 1.07996 * 122.53661 * 180.27352 * 5 4 3 31 31 H 1.09002 * 109.47152 * 329.72078 * 7 6 5 32 32 H 1.09001 * 109.46980 * 209.72179 * 7 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 34 34 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 35 35 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 36 36 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 37 37 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 38 38 H 1.08998 * 109.47061 * 300.00668 * 13 12 11 39 39 H 1.09002 * 109.46668 * 60.00355 * 13 12 11 40 40 H 1.09001 * 109.47142 * 300.00233 * 14 13 12 41 41 H 1.09002 * 109.47097 * 60.00198 * 14 13 12 42 42 H 0.97002 * 120.00201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3247 5.0782 -0.9771 8 7 4.7794 5.0486 -1.1488 9 6 5.4251 6.1359 -1.6148 10 8 4.8022 7.1390 -1.8915 11 6 6.9215 6.1056 -1.7908 12 6 7.3992 7.4560 -2.3284 13 6 8.9186 7.4256 -2.5065 14 6 9.3962 8.7758 -3.0447 15 6 10.8926 8.7455 -3.2208 16 1 11.4473 7.8524 -2.9739 17 6 11.5531 9.8577 -3.6980 18 7 10.8775 10.9451 -3.9990 19 14 13.4079 9.8199 -3.9169 20 1 13.9273 8.4893 -3.5107 21 1 13.7433 10.0676 -5.3421 22 1 14.0276 10.8725 -3.0724 23 16 2.3697 2.3770 -1.4372 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1527 1.7599 2.0894 30 1 2.9962 4.1188 1.6349 31 1 3.0581 5.8650 -0.2714 32 1 2.8494 5.2756 -1.9380 33 1 5.2775 4.2462 -0.9278 34 1 7.3966 5.9089 -0.8297 35 1 7.1885 5.3184 -2.4959 36 1 6.9243 7.6532 -3.2895 37 1 7.1323 8.2429 -1.6230 38 1 9.3932 7.2286 -1.5453 39 1 9.1859 6.6386 -3.2118 40 1 8.9215 8.9723 -4.0061 41 1 9.1288 9.5631 -2.3398 42 1 11.3423 11.7276 -4.3344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588150999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:21 Heat of formation + Delta-G solvation = -64.011085 kcal Electronic energy + Delta-G solvation = -19735.883368 eV Core-core repulsion = 16612.248498 eV Total energy + Delta-G solvation = -3123.634870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83673 -39.13477 -36.75535 -36.16315 -34.61586 -34.39716 -31.79645 -30.42421 -27.79184 -26.69550 -24.61010 -23.72197 -23.07443 -21.80417 -21.34816 -19.87312 -18.43171 -18.33373 -17.60904 -17.03888 -16.89807 -16.48900 -16.07762 -15.71874 -15.08454 -14.89240 -14.78345 -14.55015 -14.45092 -13.82512 -13.64437 -13.57742 -13.40592 -13.16826 -13.00479 -12.84164 -12.76131 -12.31109 -12.29201 -12.14536 -12.13011 -11.92339 -11.56116 -11.37178 -11.36147 -11.16759 -10.85922 -10.55247 -10.19130 -9.53130 -9.44620 -8.18310 -6.30488 -0.09563 0.59112 1.02234 1.40705 1.41698 1.55174 1.62536 1.68876 2.34493 2.42826 3.14404 3.58394 3.81654 3.85957 4.06734 4.14058 4.18925 4.19873 4.41789 4.48763 4.54979 4.68399 4.70071 4.72976 4.83553 4.85177 4.89154 4.98363 5.05330 5.20166 5.24081 5.29397 5.30332 5.33987 5.35033 5.41131 5.57177 5.58114 5.78957 5.88785 6.25953 6.50338 6.88181 7.22276 7.39184 8.94060 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.044822 B = 0.001889 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.536999 B =14821.733052 C =15065.600797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.164 4.164 4 C -0.150 4.150 5 C -0.105 4.105 6 C -0.218 4.218 7 C 0.196 3.804 8 N -0.716 5.716 9 C 0.513 3.487 10 O -0.586 6.586 11 C -0.127 4.127 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.279 1.279 23 S 0.097 5.903 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.060 0.940 40 H -0.015 1.015 41 H -0.015 1.015 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.752 -26.898 11.759 35.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.282 4.282 4 C -0.180 4.180 5 C -0.137 4.137 6 C -0.336 4.336 7 C 0.071 3.929 8 N -0.370 5.370 9 C 0.302 3.698 10 O -0.466 6.466 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.205 1.205 23 S 0.362 5.638 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.176 0.824 30 H 0.169 0.831 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.253 0.747 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.003 0.997 41 H 0.004 0.996 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.287 -26.291 9.933 35.256 hybrid contribution 0.967 0.794 1.163 1.708 sum -20.319 -25.497 11.095 34.439 Atomic orbital electron populations 1.21784 0.93811 1.02838 1.02046 1.20237 0.96516 0.88492 1.04288 1.24948 1.06499 1.01569 0.95206 1.20301 1.03553 0.93821 1.00310 1.20393 1.00094 0.97489 0.95734 1.24247 1.12501 0.99595 0.97217 1.19501 0.80637 0.92102 1.00686 1.46036 1.07613 1.16361 1.66942 1.21215 0.91147 0.82198 0.75274 1.90704 1.69990 1.34040 1.51869 1.21674 0.89814 0.99762 1.05443 1.21252 0.95578 0.96370 1.00245 1.21452 0.93660 0.97611 1.00621 1.19075 0.95104 0.93620 0.94197 1.21793 0.93958 0.99215 1.42980 0.91563 1.26093 1.04097 0.95107 0.95122 1.70140 1.37844 1.04007 1.45805 0.85326 0.78808 0.78674 0.77771 1.18115 1.20491 1.20451 1.84482 1.64567 1.04766 1.09945 0.90622 0.92348 0.93311 0.90347 0.88394 0.82353 0.83071 0.90127 0.91738 0.74724 0.86229 0.86395 0.93862 0.93757 0.92017 0.92101 0.99689 0.99636 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 71.98 0.71 -0.33 16 2 C -0.06 -0.43 6.43 29.85 0.19 -0.24 16 3 C -0.16 -1.97 5.76 24.59 0.14 -1.82 16 4 C -0.15 -1.74 10.05 21.22 0.21 -1.53 16 5 C -0.11 -1.41 10.05 21.22 0.21 -1.20 16 6 C -0.22 -3.45 5.88 24.59 0.14 -3.30 16 7 C 0.20 3.81 6.16 85.63 0.53 4.34 16 8 N -0.72 -14.03 5.55 -466.78 -2.59 -16.62 16 9 C 0.51 14.08 7.83 87.66 0.69 14.77 16 10 O -0.59 -22.04 15.98 -3.03 -0.05 -22.09 16 11 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 12 C -0.10 -3.52 4.50 30.60 0.14 -3.38 16 13 C -0.10 -3.96 5.15 30.60 0.16 -3.80 16 14 C 0.02 0.95 4.97 29.85 0.15 1.10 16 15 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 18 N -0.94 -59.38 13.29 21.44 0.28 -59.10 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 S 0.10 1.44 23.31 -56.49 -1.32 0.12 16 24 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 30 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.42 5.81 8.46 -92.71 -0.78 5.02 16 34 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.11 368.62 2.70 -72.41 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.20 Total: 7.96 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.14 Total: -29.83 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -2.30 Total: -75.72 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Total: -75.11 2.70 -72.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588150999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.401 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds