Wall clock time and date at job start Tue Mar 31 2020 07:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99525 * 2 1 3 5 5 C 1.50700 * 109.46742 * 60.00170 * 4 2 1 6 6 H 1.07996 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 90.00351 * 9 7 5 11 11 H 1.48505 * 109.47453 * 210.00237 * 9 7 5 12 12 H 1.48501 * 109.47338 * 330.00409 * 9 7 5 13 13 C 1.52999 * 109.46616 * 119.99832 * 2 1 3 14 14 N 1.46497 * 109.47586 * 299.99808 * 13 2 1 15 15 C 1.34777 * 120.00626 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99536 * 0.02562 * 15 14 13 17 17 C 1.47597 * 120.00340 * 179.97438 * 15 14 13 18 18 C 1.39726 * 120.08058 * 359.97438 * 17 15 14 19 19 C 1.37737 * 119.95090 * 179.74108 * 18 17 15 20 20 C 1.38924 * 120.11330 * 0.55173 * 19 18 17 21 21 O 1.35764 * 119.91772 * 179.72101 * 20 19 18 22 22 C 1.39164 * 120.16503 * 359.44346 * 20 19 18 23 23 F 1.35107 * 119.97811 * 180.29970 * 22 20 19 24 24 C 1.37893 * 120.04620 * 0.27667 * 22 20 19 25 25 H 1.09003 * 109.47137 * 300.00325 * 1 2 3 26 26 H 1.09000 * 109.46908 * 60.00578 * 1 2 3 27 27 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47468 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47092 * 300.00128 * 3 2 1 30 30 H 1.09003 * 109.47371 * 59.99818 * 3 2 1 31 31 H 1.08995 * 109.46901 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47518 * 300.00499 * 4 2 1 33 33 H 0.96991 * 120.00159 * 179.97438 * 8 7 5 34 34 H 1.09011 * 109.46676 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47611 * 60.00628 * 13 2 1 36 36 H 0.97008 * 119.99696 * 0.02562 * 14 13 2 37 37 H 1.07998 * 120.02184 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.94325 * 180.28733 * 19 18 17 39 39 H 0.96696 * 114.00165 * 269.72453 * 21 20 19 40 40 H 1.08004 * 120.05565 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2480 0.3983 -5.2571 10 1 2.2255 1.4407 -5.6613 11 1 1.0838 -0.5809 -6.3614 12 1 -0.0606 1.0349 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8775 -0.4907 3.6696 16 8 2.5772 -1.4788 3.7812 17 6 1.3860 0.2054 4.8747 18 6 0.5831 1.3420 4.7484 19 6 0.1215 1.9864 5.8748 20 6 0.4622 1.5151 7.1364 21 8 0.0096 2.1567 8.2440 22 6 1.2615 0.3835 7.2678 23 9 1.5855 -0.0752 8.4966 24 6 1.7226 -0.2703 6.1447 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7490 -1.2492 33 1 2.8617 -1.8825 -4.7334 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.3209 1.7122 3.7683 38 1 -0.5029 2.8622 5.7770 39 1 0.6000 2.8522 8.5644 40 1 2.3433 -1.1483 6.2465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588783748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:31 Heat of formation + Delta-G solvation = -115.041301 kcal Electronic energy + Delta-G solvation = -23116.784537 eV Core-core repulsion = 19424.723655 eV Total energy + Delta-G solvation = -3692.060882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.22432 -40.47581 -39.21418 -37.38953 -36.72887 -33.81268 -32.21236 -31.17173 -30.34957 -27.18718 -26.58124 -26.36867 -24.10346 -23.25255 -22.68435 -20.61489 -19.22597 -18.78413 -17.73847 -17.09024 -16.53448 -16.38352 -16.12339 -15.62750 -15.30285 -15.16657 -14.54512 -14.38038 -14.10541 -13.92571 -13.73189 -13.22037 -12.86873 -12.81596 -12.57795 -12.44405 -12.10017 -12.07620 -11.22268 -11.08414 -11.06178 -10.89208 -10.69045 -10.47006 -10.30515 -10.06073 -9.94092 -9.44520 -9.24503 -9.12713 -8.97604 -8.81458 -8.39355 -6.03346 -4.04934 0.23898 0.70184 2.48915 3.13660 3.28407 3.35824 3.37174 3.39155 3.51138 3.90024 4.29711 4.41819 4.51954 4.58886 4.79635 5.17971 5.32152 5.38011 5.50016 5.53394 5.55191 5.65276 5.67747 5.78094 6.08589 6.13884 6.18199 6.21964 6.31553 6.44389 6.56571 6.66456 6.99062 7.01492 7.05594 7.05982 7.56137 7.60291 7.71529 7.94935 8.21894 8.36606 8.99816 9.58447 11.08105 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.002762 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.504263 B =10135.245962 C =10683.817869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.712 5.712 15 C 0.551 3.449 16 O -0.536 6.536 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.122 4.122 20 C 0.094 3.906 21 O -0.487 6.487 22 C 0.067 3.933 23 F -0.130 7.130 24 C -0.082 4.082 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.396 0.604 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 9.249 20.371 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.336 3.664 16 O -0.414 6.414 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.141 4.141 20 C 0.048 3.952 21 O -0.298 6.298 22 C 0.047 3.953 23 F -0.108 7.108 24 C -0.102 4.102 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.235 0.765 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.253 0.747 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.355 8.017 20.276 22.234 hybrid contribution -0.117 1.035 -0.670 1.239 sum -4.472 9.052 19.606 22.053 Atomic orbital electron populations 1.21776 0.95204 1.01300 1.00238 1.20924 0.95527 0.95892 0.95015 1.21773 1.00659 0.95835 1.00228 1.19091 0.96403 0.95260 0.89392 1.21170 1.31295 1.12093 0.90493 0.92240 1.25014 0.95300 0.95056 0.99107 1.69957 1.36906 1.22964 1.23505 0.86648 0.79180 0.79415 0.83058 1.20771 1.21326 1.19934 1.21722 0.99162 0.96166 0.82528 1.46135 1.52704 1.31817 1.05702 1.18020 0.80856 0.84268 0.83209 1.90804 1.37873 1.25989 1.86752 1.19945 1.00529 0.96960 0.93605 1.21326 0.95420 0.93854 0.99342 1.21270 1.01011 1.01436 0.90377 1.18655 0.96021 0.93005 0.87494 1.84815 1.49011 1.53666 1.42298 1.17939 1.00048 0.96643 0.80661 1.91526 1.91084 1.88161 1.40031 1.21201 0.99027 1.00276 0.89709 0.95355 0.91290 0.93235 0.93245 0.91301 0.95362 0.96282 0.96263 0.92994 0.91429 0.91423 0.76521 0.84232 0.83569 0.74703 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.10 8.05 37.15 0.30 -1.80 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.23 7.65 -34.44 -0.26 -13.50 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 14 N -0.71 -9.66 4.91 -61.33 -0.30 -9.96 16 15 C 0.55 7.93 7.76 -12.44 -0.10 7.84 16 16 O -0.54 -9.75 16.34 5.29 0.09 -9.67 16 17 C -0.11 -1.21 5.87 -104.96 -0.62 -1.82 16 18 C -0.08 -0.68 9.53 -39.21 -0.37 -1.05 16 19 C -0.12 -0.91 9.97 -39.51 -0.39 -1.30 16 20 C 0.09 0.83 6.72 -38.98 -0.26 0.57 16 21 O -0.49 -3.71 13.35 -19.00 -0.25 -3.96 16 22 C 0.07 0.70 7.30 -39.36 -0.29 0.41 16 23 F -0.13 -1.46 17.10 2.25 0.04 -1.42 16 24 C -0.08 -0.92 9.56 -39.15 -0.37 -1.30 16 25 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 26 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 30 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 4.37 4.18 -40.82 -0.17 4.20 16 37 H 0.14 0.89 6.39 -52.49 -0.34 0.55 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.40 1.05 9.06 45.56 0.41 1.47 16 40 H 0.15 1.77 7.64 -52.48 -0.40 1.37 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -32.05 336.04 -6.32 -38.37 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.29 Total: 1.94 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.38 Total: -10.88 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.44 Total: -35.23 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.17 Total: -13.63 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.05 -6.32 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.675 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds