Wall clock time and date at job start Tue Mar 31 2020 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47240 * 239.99525 * 2 1 3 5 5 C 1.50700 * 109.46742 * 60.00170 * 4 2 1 6 6 H 1.07996 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 90.00351 * 9 7 5 11 11 H 1.48505 * 109.47453 * 210.00237 * 9 7 5 12 12 H 1.48501 * 109.47338 * 330.00409 * 9 7 5 13 13 C 1.52999 * 109.46616 * 119.99832 * 2 1 3 14 14 N 1.46497 * 109.47586 * 299.99808 * 13 2 1 15 15 C 1.34777 * 120.00626 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99536 * 0.02562 * 15 14 13 17 17 C 1.47597 * 120.00340 * 179.97438 * 15 14 13 18 18 C 1.39726 * 120.08058 * 359.97438 * 17 15 14 19 19 C 1.37737 * 119.95090 * 179.74108 * 18 17 15 20 20 C 1.38924 * 120.11330 * 0.55173 * 19 18 17 21 21 O 1.35764 * 119.91772 * 179.72101 * 20 19 18 22 22 C 1.39164 * 120.16503 * 359.44346 * 20 19 18 23 23 F 1.35107 * 119.97811 * 180.29970 * 22 20 19 24 24 C 1.37893 * 120.04620 * 0.27667 * 22 20 19 25 25 H 1.09003 * 109.47137 * 300.00325 * 1 2 3 26 26 H 1.09000 * 109.46908 * 60.00578 * 1 2 3 27 27 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47468 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47092 * 300.00128 * 3 2 1 30 30 H 1.09003 * 109.47371 * 59.99818 * 3 2 1 31 31 H 1.08995 * 109.46901 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47518 * 300.00499 * 4 2 1 33 33 H 0.96991 * 120.00159 * 179.97438 * 8 7 5 34 34 H 1.09011 * 109.46676 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47611 * 60.00628 * 13 2 1 36 36 H 0.97008 * 119.99696 * 0.02562 * 14 13 2 37 37 H 1.07998 * 120.02184 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.94325 * 180.28733 * 19 18 17 39 39 H 0.96696 * 114.00165 * 269.72453 * 21 20 19 40 40 H 1.08004 * 120.05565 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2480 0.3983 -5.2571 10 1 2.2255 1.4407 -5.6613 11 1 1.0838 -0.5809 -6.3614 12 1 -0.0606 1.0349 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8775 -0.4907 3.6696 16 8 2.5772 -1.4788 3.7812 17 6 1.3860 0.2054 4.8747 18 6 0.5831 1.3420 4.7484 19 6 0.1215 1.9864 5.8748 20 6 0.4622 1.5151 7.1364 21 8 0.0096 2.1567 8.2440 22 6 1.2615 0.3835 7.2678 23 9 1.5855 -0.0752 8.4966 24 6 1.7226 -0.2703 6.1447 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7490 -1.2492 33 1 2.8617 -1.8825 -4.7334 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.3209 1.7122 3.7683 38 1 -0.5029 2.8622 5.7770 39 1 0.6000 2.8522 8.5644 40 1 2.3433 -1.1483 6.2465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588783748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:30 Heat of formation + Delta-G solvation = -137.269535 kcal Electronic energy + Delta-G solvation = -23117.748426 eV Core-core repulsion = 19424.723655 eV Total energy + Delta-G solvation = -3693.024771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02524 -41.45148 -40.10988 -38.70413 -37.57973 -35.33990 -34.01195 -31.88867 -31.22378 -29.05950 -27.92760 -27.65867 -25.38222 -24.24350 -23.90936 -21.72240 -20.23297 -19.67653 -18.93883 -18.35289 -17.89497 -17.23383 -17.10243 -16.80145 -16.44035 -16.37701 -16.06818 -15.20623 -15.16322 -15.04208 -14.83391 -14.71102 -14.31161 -13.91969 -13.84277 -13.60093 -13.30738 -13.03317 -12.84338 -12.70459 -12.55844 -12.30749 -12.21082 -11.96210 -11.72113 -11.51682 -11.32079 -10.92266 -10.82324 -10.49651 -10.24749 -10.10383 -9.75870 -8.12400 -6.20028 -0.52248 -0.00152 1.44279 1.44704 1.54822 1.59384 2.02818 2.46190 2.53193 2.83088 3.22519 3.23330 3.57115 3.64519 3.90632 3.99151 4.06041 4.10049 4.24324 4.52261 4.69819 4.72048 4.73582 4.85056 4.89299 4.99013 4.99101 5.06881 5.11335 5.16004 5.35631 5.46492 5.53297 5.54104 5.56449 5.59370 5.83163 5.92171 6.31696 6.48737 6.65515 6.95745 7.12632 7.47927 9.00203 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.002762 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.504263 B =10135.245962 C =10683.817869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.258 1.258 13 C 0.139 3.861 14 N -0.697 5.697 15 C 0.552 3.448 16 O -0.584 6.584 17 C -0.125 4.125 18 C -0.064 4.064 19 C -0.110 4.110 20 C 0.109 3.891 21 O -0.495 6.495 22 C 0.048 3.952 23 F -0.140 7.140 24 C -0.092 4.092 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.074 0.926 31 H -0.014 1.014 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.415 0.585 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.419 0.581 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 12.833 21.363 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.182 1.182 13 C 0.015 3.985 14 N -0.350 5.350 15 C 0.340 3.660 16 O -0.466 6.466 17 C -0.128 4.128 18 C -0.082 4.082 19 C -0.128 4.128 20 C 0.063 3.937 21 O -0.310 6.310 22 C 0.028 3.972 23 F -0.119 7.119 24 C -0.112 4.112 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.255 0.745 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.280 0.720 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.777 11.664 21.293 25.207 hybrid contribution 0.627 -0.060 -0.853 1.060 sum -6.150 11.605 20.441 24.296 Atomic orbital electron populations 1.21724 0.93402 1.01078 1.01893 1.20718 0.96847 0.96432 0.92516 1.21721 0.99998 0.94431 1.01926 1.18983 0.94311 0.94232 0.92392 1.21609 1.30325 1.12050 0.90975 0.90685 1.25953 0.95726 0.95849 1.02761 1.70120 1.38922 1.25031 1.24052 0.85554 0.79255 0.78075 0.78806 1.20207 1.21821 1.18154 1.21301 0.98071 0.95527 0.83553 1.45829 1.52702 1.32007 1.04450 1.18498 0.79815 0.83621 0.84051 1.90784 1.40086 1.28274 1.87410 1.19643 1.02853 0.98634 0.91683 1.21606 0.93451 0.91994 1.01165 1.21600 1.00349 1.01894 0.88996 1.18790 0.94322 0.92022 0.88582 1.84758 1.49745 1.54455 1.41999 1.18085 1.01412 0.97747 0.79968 1.91494 1.91383 1.88498 1.40520 1.21104 0.99409 1.00222 0.90472 0.90799 0.92412 0.94500 0.94432 0.92391 0.90759 0.99583 0.99618 0.93241 0.93210 0.93306 0.74539 0.81367 0.79973 0.71962 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 2 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.78 8.05 71.98 0.58 -3.20 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.61 7.65 25.60 0.20 -26.42 16 6 H 0.08 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 C 0.14 4.72 4.56 86.38 0.39 5.11 16 14 N -0.70 -17.64 4.91 -466.21 -2.29 -19.93 16 15 C 0.55 15.59 7.76 86.71 0.67 16.26 16 16 O -0.58 -22.08 16.34 -3.99 -0.07 -22.14 16 17 C -0.12 -2.60 5.87 -20.09 -0.12 -2.72 16 18 C -0.06 -0.79 9.53 22.51 0.21 -0.58 16 19 C -0.11 -1.10 9.97 22.32 0.22 -0.87 16 20 C 0.11 1.56 6.72 22.66 0.15 1.71 16 21 O -0.50 -5.75 13.35 -90.91 -1.21 -6.96 16 22 C 0.05 0.94 7.30 22.41 0.16 1.10 16 23 F -0.14 -3.11 17.10 44.97 0.77 -2.35 16 24 C -0.09 -2.05 9.56 22.55 0.22 -1.84 16 25 H 0.07 1.60 6.86 -2.39 -0.02 1.58 16 26 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.91 6.62 -2.38 -0.02 1.90 16 30 H 0.07 1.58 6.86 -2.39 -0.02 1.56 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.26 14.84 8.31 -92.72 -0.77 14.07 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.41 7.35 4.18 -92.70 -0.39 6.96 16 37 H 0.17 1.09 6.39 -2.91 -0.02 1.07 16 38 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 39 H 0.42 0.66 9.06 -74.06 -0.67 -0.01 16 40 H 0.14 3.41 7.64 -2.91 -0.02 3.38 16 Total: -1.00 -73.92 336.04 3.37 -70.55 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.03 Total: 7.26 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.83 Total: -14.86 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -2.00 Total: -76.24 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.28 Total: -29.11 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.77 Total: -2.35 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.92 3.37 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.719 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds