Wall clock time and date at job start Tue Mar 31 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.34776 * 119.99873 * 300.00134 * 4 2 1 6 6 O 1.21283 * 119.99876 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47180 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47577 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47577 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47180 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99918 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46922 * 119.99763 * 15 13 11 18 18 H 1.48491 * 109.46731 * 239.99984 * 15 13 11 19 19 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 20 20 C 1.33388 * 125.20278 * 59.99401 * 19 2 1 21 21 C 1.38426 * 114.91704 * 179.97438 * 20 19 2 22 22 C 1.33380 * 114.92268 * 0.02562 * 21 20 19 23 23 S 1.75881 * 109.59563 * 359.75703 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 0.96999 * 119.99630 * 120.00001 * 4 2 1 31 31 H 1.09001 * 109.47380 * 300.00287 * 7 5 4 32 32 H 1.09000 * 109.47120 * 60.00295 * 7 5 4 33 33 H 1.09001 * 109.46997 * 300.00275 * 8 7 5 34 34 H 1.08996 * 109.47134 * 59.99523 * 8 7 5 35 35 H 1.09001 * 109.46885 * 299.99981 * 9 8 7 36 36 H 1.08999 * 109.47330 * 59.98970 * 9 8 7 37 37 H 1.09001 * 109.46997 * 299.99912 * 10 9 8 38 38 H 1.09000 * 109.47054 * 59.99645 * 10 9 8 39 39 H 0.96991 * 120.00061 * 180.02562 * 14 13 11 40 40 H 1.07998 * 122.53841 * 359.96206 * 20 19 2 41 41 H 1.08002 * 122.53571 * 180.02562 * 21 20 19 42 42 H 1.08004 * 125.20431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6928 -0.2302 2.4202 6 8 0.9959 0.7561 2.5315 7 6 2.1948 -0.9410 3.6507 8 6 1.6844 -0.2201 4.8999 9 6 2.1945 -0.9413 6.1491 10 6 1.6846 -0.2200 7.3984 11 6 2.1866 -0.9308 8.6288 12 1 2.8075 -1.8088 8.5297 13 6 1.8539 -0.4595 9.8811 14 7 1.0982 0.6101 10.0019 15 14 2.4767 -1.3401 11.4063 16 1 3.3017 -2.5067 11.0021 17 1 3.3023 -0.4068 12.2143 18 1 1.3218 -1.8062 12.2149 19 6 2.0324 -0.7103 -1.2306 20 6 1.7748 -0.3461 -2.4877 21 6 2.3458 -1.1526 -3.4571 22 6 3.0666 -2.1718 -2.9873 23 16 3.0534 -2.1424 -1.2288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 2.5761 -1.4792 1.1070 31 1 1.8311 -1.9685 3.6505 32 1 3.2848 -0.9413 3.6508 33 1 2.0477 0.8076 4.9003 34 1 0.5944 -0.2200 4.8996 35 1 1.8315 -1.9691 6.1490 36 1 3.2844 -0.9410 6.1492 37 1 2.0480 0.8076 7.3984 38 1 0.5946 -0.2200 7.3985 39 1 0.8645 0.9418 10.8828 40 1 1.1667 0.5126 -2.7306 41 1 2.2174 -0.9702 -4.5138 42 1 3.5832 -2.9009 -3.5939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588927846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:55 Heat of formation + Delta-G solvation = -30.381598 kcal Electronic energy + Delta-G solvation = -20791.896509 eV Core-core repulsion = 17669.719923 eV Total energy + Delta-G solvation = -3122.176586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33741 -38.40953 -36.12160 -34.78872 -32.74990 -32.02125 -29.57317 -28.81670 -27.45724 -25.75855 -24.74963 -22.82720 -21.40908 -19.97154 -19.86091 -19.14002 -18.27587 -16.65937 -16.15747 -15.66574 -15.66128 -15.44984 -14.44465 -14.43243 -13.91664 -13.88804 -13.86717 -13.04439 -12.93187 -12.73154 -12.58553 -12.39499 -12.36985 -11.94439 -11.73423 -11.65156 -11.55118 -11.44093 -11.01531 -10.97624 -10.51626 -10.46371 -10.39173 -9.65226 -9.59884 -9.42413 -9.19038 -8.95064 -8.92597 -8.86736 -8.29223 -5.93857 -3.96148 0.60111 1.15268 1.57398 2.36182 2.70093 3.03320 3.34217 3.41364 3.45421 4.14363 4.50279 4.68229 4.74652 4.88486 4.90878 5.06585 5.16467 5.32473 5.38701 5.41784 5.47348 5.48324 5.61821 5.66691 5.71499 5.86620 5.88849 6.01110 6.11854 6.12863 6.16539 6.31919 6.38581 6.57288 6.86285 7.04009 7.22037 7.38824 7.76220 7.92088 8.07838 8.23633 8.49801 9.11848 9.67464 11.17514 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.002372 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.671023 B =11799.627394 C =12355.330715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.247 3.753 3 C -0.158 4.158 4 N -0.735 5.735 5 C 0.518 3.482 6 O -0.526 6.526 7 C -0.141 4.141 8 C -0.102 4.102 9 C -0.111 4.111 10 C 0.019 3.981 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.054 3.946 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.175 4.175 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.214 4.214 23 S 0.098 5.902 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.394 0.606 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -4.525 -29.730 30.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.159 3.841 3 C -0.216 4.216 4 N -0.390 5.390 5 C 0.306 3.694 6 O -0.402 6.402 7 C -0.180 4.180 8 C -0.140 4.140 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.292 4.292 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.349 4.349 23 S 0.362 5.638 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.229 0.771 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.283 -4.616 -28.401 28.960 hybrid contribution 0.068 -0.105 -0.464 0.481 sum 3.351 -4.721 -28.865 29.440 Atomic orbital electron populations 1.22250 0.92600 1.02730 1.04040 1.18652 0.94397 0.91448 0.79595 1.22252 1.01321 0.94011 1.04045 1.46364 1.54889 1.32188 1.05515 1.21044 0.79544 0.84525 0.84237 1.90644 1.37046 1.25927 1.86551 1.21827 1.02460 1.00874 0.92880 1.21441 1.01206 0.99449 0.91897 1.21650 0.99488 0.98903 0.94777 1.19100 0.96462 0.95606 0.90588 1.21323 1.31160 1.12100 0.91131 0.92714 1.25049 0.95313 0.95117 0.99159 1.69983 1.37126 1.23104 1.23266 0.86559 0.78610 0.79688 0.83272 1.19788 1.21066 1.21060 1.24720 1.05139 1.00896 0.98483 1.20012 1.03194 1.02187 0.90809 1.20175 0.99522 0.95501 1.00934 1.25639 1.07733 1.04713 0.96836 1.84181 1.49083 1.26056 1.04437 0.89296 0.92415 0.91649 0.89293 0.92418 0.91649 0.77084 0.89120 0.89118 0.91759 0.91753 0.93491 0.93494 0.96589 0.96591 0.93115 0.84053 0.84088 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.26 37.16 0.31 -1.34 16 2 C 0.25 2.52 0.94 -132.97 -0.13 2.40 16 3 C -0.16 -1.65 8.26 37.16 0.31 -1.34 16 4 N -0.73 -7.98 5.09 -48.68 -0.25 -8.23 16 5 C 0.52 7.09 7.25 -10.99 -0.08 7.01 16 6 O -0.53 -8.84 12.19 5.55 0.07 -8.77 16 7 C -0.14 -1.88 5.70 -27.88 -0.16 -2.03 16 8 C -0.10 -1.81 4.50 -26.74 -0.12 -1.93 16 9 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.17 -1.55 5.21 -36.00 -0.19 -1.74 16 20 C -0.13 -1.02 9.31 -41.21 -0.38 -1.41 16 21 C -0.13 -0.89 10.18 -41.21 -0.42 -1.31 16 22 C -0.21 -1.46 11.23 29.03 0.33 -1.13 16 23 S 0.10 0.77 21.48 -107.50 -2.31 -1.54 16 24 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 27 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 30 H 0.39 3.59 6.80 -40.82 -0.28 3.31 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.14 0.91 8.01 -52.49 -0.42 0.49 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -32.75 354.97 -9.42 -42.17 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.77 Total: -0.37 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.22 Total: -18.71 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.49 Total: -35.13 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.31 Total: -1.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.75 -9.42 -42.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588927846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.792 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds