Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.34776 * 119.99873 * 300.00134 * 4 2 1 6 6 O 1.21283 * 119.99876 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47180 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47577 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47577 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47180 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99918 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46922 * 119.99763 * 15 13 11 18 18 H 1.48491 * 109.46731 * 239.99984 * 15 13 11 19 19 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 20 20 C 1.33388 * 125.20278 * 59.99401 * 19 2 1 21 21 C 1.38426 * 114.91704 * 179.97438 * 20 19 2 22 22 C 1.33380 * 114.92268 * 0.02562 * 21 20 19 23 23 S 1.75881 * 109.59563 * 359.75703 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 0.96999 * 119.99630 * 120.00001 * 4 2 1 31 31 H 1.09001 * 109.47380 * 300.00287 * 7 5 4 32 32 H 1.09000 * 109.47120 * 60.00295 * 7 5 4 33 33 H 1.09001 * 109.46997 * 300.00275 * 8 7 5 34 34 H 1.08996 * 109.47134 * 59.99523 * 8 7 5 35 35 H 1.09001 * 109.46885 * 299.99981 * 9 8 7 36 36 H 1.08999 * 109.47330 * 59.98970 * 9 8 7 37 37 H 1.09001 * 109.46997 * 299.99912 * 10 9 8 38 38 H 1.09000 * 109.47054 * 59.99645 * 10 9 8 39 39 H 0.96991 * 120.00061 * 180.02562 * 14 13 11 40 40 H 1.07998 * 122.53841 * 359.96206 * 20 19 2 41 41 H 1.08002 * 122.53571 * 180.02562 * 21 20 19 42 42 H 1.08004 * 125.20431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6928 -0.2302 2.4202 6 8 0.9959 0.7561 2.5315 7 6 2.1948 -0.9410 3.6507 8 6 1.6844 -0.2201 4.8999 9 6 2.1945 -0.9413 6.1491 10 6 1.6846 -0.2200 7.3984 11 6 2.1866 -0.9308 8.6288 12 1 2.8075 -1.8088 8.5297 13 6 1.8539 -0.4595 9.8811 14 7 1.0982 0.6101 10.0019 15 14 2.4767 -1.3401 11.4063 16 1 3.3017 -2.5067 11.0021 17 1 3.3023 -0.4068 12.2143 18 1 1.3218 -1.8062 12.2149 19 6 2.0324 -0.7103 -1.2306 20 6 1.7748 -0.3461 -2.4877 21 6 2.3458 -1.1526 -3.4571 22 6 3.0666 -2.1718 -2.9873 23 16 3.0534 -2.1424 -1.2288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 2.5761 -1.4792 1.1070 31 1 1.8311 -1.9685 3.6505 32 1 3.2848 -0.9413 3.6508 33 1 2.0477 0.8076 4.9003 34 1 0.5944 -0.2200 4.8996 35 1 1.8315 -1.9691 6.1490 36 1 3.2844 -0.9410 6.1492 37 1 2.0480 0.8076 7.3984 38 1 0.5946 -0.2200 7.3985 39 1 0.8645 0.9418 10.8828 40 1 1.1667 0.5126 -2.7306 41 1 2.2174 -0.9702 -4.5138 42 1 3.5832 -2.9009 -3.5939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588927846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -49.462152 kcal Electronic energy + Delta-G solvation = -20792.723904 eV Core-core repulsion = 17669.719923 eV Total energy + Delta-G solvation = -3123.003981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32253 -39.12398 -37.08565 -36.40060 -34.62327 -33.16744 -31.19589 -29.49909 -28.29445 -27.49464 -25.54231 -24.30508 -22.56237 -21.62513 -20.83700 -19.75374 -19.08229 -18.40855 -17.56175 -16.88361 -16.53237 -16.35726 -16.16498 -15.62024 -14.99530 -14.95674 -14.68897 -14.52532 -13.91799 -13.67151 -13.52407 -13.51693 -13.37973 -13.22167 -13.08947 -12.94951 -12.79393 -12.43595 -12.35092 -12.30706 -12.13170 -12.09583 -11.62633 -11.37065 -11.33107 -11.09943 -10.60278 -10.55276 -10.32426 -9.56560 -9.42884 -8.18473 -6.30388 0.03778 0.57529 1.02445 1.40496 1.41435 1.54917 1.62501 1.83996 2.11388 2.42203 3.14215 3.42334 3.79874 4.00027 4.04995 4.05891 4.16478 4.25146 4.50961 4.58492 4.67263 4.67436 4.68555 4.75494 4.80958 4.84385 4.84748 4.89122 5.11579 5.20052 5.22519 5.26721 5.33142 5.34941 5.38523 5.47204 5.57131 5.59409 5.79077 5.88873 6.26102 6.46099 6.88240 7.21929 7.39118 8.93952 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.036704 B = 0.002372 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.671023 B =11799.627394 C =12355.330715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.246 3.754 3 C -0.154 4.154 4 N -0.722 5.722 5 C 0.518 3.482 6 O -0.564 6.564 7 C -0.132 4.132 8 C -0.093 4.093 9 C -0.096 4.096 10 C 0.019 3.981 11 C -0.540 4.540 12 H 0.065 0.935 13 C -0.008 4.008 14 N -0.937 5.937 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.196 4.196 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.209 4.209 23 S 0.088 5.912 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.405 0.595 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.059 0.941 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.153 0.847 41 H 0.164 0.836 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -6.592 -31.404 32.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.159 3.841 3 C -0.212 4.212 4 N -0.376 5.376 5 C 0.306 3.694 6 O -0.443 6.443 7 C -0.172 4.172 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.018 4.018 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.181 1.181 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.313 4.313 20 C -0.158 4.158 21 C -0.169 4.169 22 C -0.344 4.344 23 S 0.352 5.648 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.242 0.758 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.182 0.818 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.765 -6.714 -30.109 31.215 hybrid contribution -0.405 0.565 -0.031 0.695 sum 4.360 -6.149 -30.141 31.069 Atomic orbital electron populations 1.22191 0.93007 1.02499 1.03544 1.18634 0.94155 0.91409 0.79921 1.22193 1.01197 0.94311 1.03547 1.46234 1.54186 1.32196 1.05000 1.21057 0.79156 0.84044 0.85141 1.90649 1.38860 1.27625 1.87132 1.21711 1.03849 1.01228 0.90382 1.21218 0.99998 0.98766 0.93129 1.21450 1.00045 0.98871 0.93020 1.19056 0.94540 0.94709 0.93526 1.21780 1.31324 1.12553 0.92143 0.91663 1.26096 0.95367 0.95886 1.03130 1.70134 1.38451 1.24862 1.24364 0.85334 0.78200 0.78709 0.78401 1.18149 1.20462 1.20451 1.24528 1.06781 1.01939 0.98074 1.20283 1.02581 1.02379 0.90586 1.20440 0.99276 0.95221 1.01944 1.25988 1.07324 1.05009 0.96087 1.84168 1.49024 1.25676 1.05936 0.92081 0.92433 0.89828 0.92079 0.92438 0.89829 0.75839 0.86648 0.86646 0.93618 0.93607 0.92192 0.92198 0.99645 0.99647 0.92857 0.82920 0.81834 0.79575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.26 71.98 0.59 -2.58 16 2 C 0.25 4.85 0.94 2.86 0.00 4.85 16 3 C -0.15 -3.18 8.26 71.98 0.59 -2.58 16 4 N -0.72 -15.07 5.09 -426.32 -2.17 -17.24 16 5 C 0.52 14.08 7.25 87.66 0.64 14.71 16 6 O -0.56 -19.71 12.19 -3.04 -0.04 -19.75 16 7 C -0.13 -3.36 5.70 29.85 0.17 -3.19 16 8 C -0.09 -3.36 4.50 30.59 0.14 -3.22 16 9 C -0.10 -3.97 5.15 30.59 0.16 -3.82 16 10 C 0.02 1.04 4.97 29.85 0.15 1.19 16 11 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 14 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 15 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.20 -3.14 5.21 24.59 0.13 -3.01 16 20 C -0.13 -1.68 9.31 21.22 0.20 -1.49 16 21 C -0.14 -1.49 10.18 21.21 0.22 -1.27 16 22 C -0.21 -2.25 11.23 66.72 0.75 -1.50 16 23 S 0.09 1.20 21.48 -56.49 -1.21 -0.01 16 24 H 0.06 1.63 6.17 -2.39 -0.01 1.61 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.36 7.94 -2.38 -0.02 1.34 16 27 H 0.06 1.63 6.17 -2.39 -0.01 1.61 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.36 7.94 -2.39 -0.02 1.34 16 30 H 0.40 6.72 6.80 -92.71 -0.63 6.09 16 31 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.15 1.58 8.01 -2.91 -0.02 1.55 16 41 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -72.98 354.97 3.68 -69.29 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.37 Total: 12.78 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 4.43 Total: -33.21 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.88 Total: -76.25 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.21 Total: -0.01 kcal Total: -72.98 3.68 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588927846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.832 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds