Wall clock time and date at job start Tue Mar 31 2020 08:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46882 * 2 1 4 4 H 1.08997 * 109.47646 * 304.99941 * 3 2 1 5 5 O 1.42901 * 109.46927 * 65.00364 * 3 2 1 6 6 C 1.53003 * 109.47072 * 184.99844 * 3 2 1 7 7 N 1.46492 * 109.47193 * 180.02562 * 6 3 2 8 8 C 1.40002 * 120.00165 * 180.02562 * 7 6 3 9 9 C 1.38650 * 120.09787 * 359.72509 * 8 7 6 10 10 C 1.38284 * 120.00206 * 179.70196 * 9 8 7 11 11 C 1.38264 * 120.20802 * 0.59458 * 10 9 8 12 12 C 1.38254 * 120.19576 * 359.68358 * 11 10 9 13 13 C 1.38733 * 119.99132 * 0.02562 * 12 11 10 14 14 S 1.76198 * 120.10023 * 179.97438 * 13 12 11 15 15 C 1.81404 * 103.00017 * 354.28206 * 14 13 12 16 16 H 1.09007 * 109.46943 * 52.12605 * 15 14 13 17 17 C 1.52995 * 109.47146 * 172.12148 * 15 14 13 18 18 C 1.50697 * 109.47151 * 292.12616 * 15 14 13 19 19 H 1.07998 * 120.00122 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99840 * 179.97438 * 18 15 14 21 21 N 1.31512 * 120.00223 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 120.00035 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47112 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47047 * 119.99983 * 22 20 18 25 25 H 1.48498 * 109.47371 * 240.00042 * 22 20 18 26 26 H 1.09004 * 109.46926 * 59.99793 * 1 2 3 27 27 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46820 * 299.99483 * 1 2 3 29 29 H 1.09005 * 109.47169 * 240.00188 * 2 1 3 30 30 H 1.08995 * 109.47120 * 120.00243 * 2 1 3 31 31 H 0.96701 * 114.00221 * 59.99211 * 5 3 2 32 32 H 1.08997 * 109.46964 * 300.00514 * 6 3 2 33 33 H 1.09001 * 109.46655 * 60.00141 * 6 3 2 34 34 H 0.97004 * 120.00186 * 0.02562 * 7 6 3 35 35 H 1.08002 * 119.99741 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.89878 * 180.32461 * 10 9 8 37 37 H 1.07996 * 119.90810 * 179.70350 * 11 10 9 38 38 H 1.08003 * 120.00299 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47430 * 186.03246 * 17 15 14 40 40 H 1.08998 * 109.47378 * 306.03533 * 17 15 14 41 41 H 1.09003 * 109.47260 * 66.03561 * 17 15 14 42 42 H 0.97001 * 119.99928 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4444 -0.1257 7 7 4.0532 2.8255 -0.1251 8 6 5.4252 3.0830 -0.2311 9 6 6.3242 2.0321 -0.3311 10 6 7.6784 2.2888 -0.4420 11 6 8.1419 3.5915 -0.4413 12 6 7.2535 4.6456 -0.3362 13 6 5.8926 4.3976 -0.2306 14 16 4.7579 5.7388 -0.0959 15 6 5.8473 7.1835 0.0340 16 1 6.5646 7.1726 -0.7867 17 6 5.0097 8.4619 -0.0379 18 6 6.5855 7.1396 1.3470 19 1 6.4160 6.3245 2.0348 20 6 7.4773 8.1402 1.6702 21 7 7.6841 9.1326 0.8324 22 14 8.3919 8.0863 3.2981 23 1 7.9847 6.8750 4.0547 24 1 9.8542 8.0417 3.0432 25 1 8.0643 9.2987 4.0904 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0141 1.6541 2.0139 32 1 3.9994 0.9053 0.7161 33 1 3.8532 0.9571 -1.0571 34 1 3.4259 3.5618 -0.0512 35 1 5.9663 1.0131 -0.3269 36 1 8.3767 1.4691 -0.5251 37 1 9.2010 3.7862 -0.5233 38 1 7.6189 5.6619 -0.3363 39 1 5.6707 9.3281 -0.0678 40 1 4.3944 8.4431 -0.9374 41 1 4.3674 8.5252 0.8405 42 1 8.3118 9.8364 1.0597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:09 Heat of formation + Delta-G solvation = -44.119950 kcal Electronic energy + Delta-G solvation = -21385.439985 eV Core-core repulsion = 18262.667659 eV Total energy + Delta-G solvation = -3122.772326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.07040 -38.00534 -34.80277 -34.00968 -33.04657 -30.56778 -30.25958 -29.63491 -27.09897 -25.31139 -23.77278 -22.36101 -21.73347 -21.30931 -20.50142 -17.28196 -16.67774 -16.41173 -16.28402 -16.01139 -15.43315 -14.82695 -14.54604 -14.15150 -13.97037 -13.43470 -13.37338 -13.19387 -13.12109 -12.83117 -12.35218 -12.29754 -12.07194 -11.66376 -11.52112 -11.28213 -11.11633 -11.00000 -10.95247 -10.66217 -10.44347 -10.32435 -10.13962 -9.94405 -9.70897 -9.30433 -8.90095 -8.84829 -8.43614 -7.30566 -6.31046 -6.02037 -4.22391 1.95220 2.18143 2.76773 3.24560 3.32955 3.38772 3.58329 3.81725 4.27213 4.36499 4.42398 4.50292 4.72142 4.76804 5.10582 5.16955 5.19554 5.37039 5.45144 5.49764 5.58589 5.61751 5.64725 5.84117 5.94922 5.97979 6.11590 6.25157 6.55773 6.65114 6.72588 6.77472 6.86798 6.95436 7.22265 7.35552 7.43494 7.47313 7.62795 7.76535 7.84698 8.06548 8.12084 8.79420 9.42100 10.90470 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.004127 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.256423 B = 6783.126795 C = 7428.614823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.095 3.905 4 H 0.103 0.897 5 O -0.553 6.553 6 C 0.098 3.902 7 N -0.741 5.741 8 C 0.219 3.781 9 C -0.197 4.197 10 C -0.094 4.094 11 C -0.165 4.165 12 C -0.067 4.067 13 C -0.119 4.119 14 S -0.201 6.201 15 C 0.098 3.902 16 H 0.049 0.951 17 C -0.124 4.124 18 C -0.514 4.514 19 H 0.067 0.933 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.375 0.625 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.407 0.593 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.019 0.981 41 H 0.039 0.961 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -16.320 -2.786 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.036 3.964 4 H 0.121 0.879 5 O -0.358 6.358 6 C -0.028 4.028 7 N -0.375 5.375 8 C 0.112 3.888 9 C -0.222 4.222 10 C -0.116 4.116 11 C -0.187 4.187 12 C -0.092 4.092 13 C -0.236 4.236 14 S 0.043 5.957 15 C -0.030 4.030 16 H 0.067 0.933 17 C -0.184 4.184 18 C -0.553 4.553 19 H 0.085 0.915 20 C -0.135 4.135 21 N -0.527 5.527 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.222 0.778 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.162 0.838 39 H 0.115 0.885 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.116 -15.843 -3.215 18.559 hybrid contribution 2.106 -0.161 1.292 2.476 sum -7.010 -16.003 -1.922 17.577 Atomic orbital electron populations 1.21694 0.94849 1.01433 1.02610 1.22160 0.97353 0.96607 1.02943 1.22193 0.92462 0.93315 0.88477 0.87886 1.86629 1.76538 1.57235 1.15426 1.21933 0.94408 0.85127 1.01292 1.44551 1.04048 1.06394 1.82480 1.17339 0.83863 0.91683 0.95957 1.20324 0.93076 0.96614 1.12138 1.20733 0.94472 0.96387 1.00012 1.20823 0.99078 0.92448 1.06335 1.21432 0.91229 1.00786 0.95720 1.21106 0.97259 0.94337 1.10862 1.84444 1.17634 1.02377 1.91196 1.21050 0.93473 0.87776 1.00684 0.93288 1.21626 0.98913 0.99958 0.97858 1.21310 1.23036 1.08946 1.02031 0.91483 1.24958 0.96404 0.95018 0.97105 1.69881 1.35536 1.11517 1.35719 0.86446 0.79442 0.78205 0.83569 1.19527 1.20852 1.20860 0.92657 0.92828 0.91935 0.90867 0.91423 0.77786 0.92556 0.91956 0.75513 0.87005 0.87080 0.86876 0.83766 0.88509 0.96176 0.94202 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.72 16 2 C -0.15 -1.10 5.61 -26.73 -0.15 -1.25 16 3 C 0.10 0.91 3.05 -26.73 -0.08 0.83 16 4 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 5 O -0.55 -6.18 12.62 -35.23 -0.44 -6.62 16 6 C 0.10 1.09 4.58 -4.04 -0.02 1.07 16 7 N -0.74 -11.47 5.58 -58.45 -0.33 -11.79 16 8 C 0.22 3.96 6.66 -83.49 -0.56 3.40 16 9 C -0.20 -3.16 9.31 -39.41 -0.37 -3.52 16 10 C -0.09 -1.51 10.04 -39.55 -0.40 -1.90 16 11 C -0.17 -2.98 10.04 -39.57 -0.40 -3.38 16 12 C -0.07 -1.42 8.80 -39.39 -0.35 -1.77 16 13 C -0.12 -2.49 6.05 -38.92 -0.24 -2.73 16 14 S -0.20 -4.43 19.77 -107.50 -2.13 -6.55 16 15 C 0.10 2.42 2.01 -27.89 -0.06 2.36 16 16 H 0.05 1.29 7.00 -51.92 -0.36 0.93 16 17 C -0.12 -2.95 8.88 37.16 0.33 -2.62 16 18 C -0.51 -13.70 6.90 -34.44 -0.24 -13.93 16 19 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 21 N -0.89 -24.25 11.39 55.43 0.63 -23.62 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.37 3.11 9.05 45.56 0.41 3.52 16 32 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 33 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 34 H 0.41 6.83 6.89 -40.82 -0.28 6.55 16 35 H 0.11 1.48 6.74 -52.49 -0.35 1.13 16 36 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.14 3.38 5.09 -52.48 -0.27 3.11 16 39 H 0.10 2.46 6.26 -51.93 -0.33 2.14 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -28.69 351.15 -9.99 -38.68 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.76 Total: 11.01 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.24 Total: -22.43 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.31 Total: -35.41 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.44 Total: -6.62 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.13 Total: -6.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.69 -9.99 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.435 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds