Wall clock time and date at job start Tue Mar 31 2020 08:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46882 * 2 1 4 4 H 1.08997 * 109.47646 * 304.99941 * 3 2 1 5 5 O 1.42901 * 109.46927 * 65.00364 * 3 2 1 6 6 C 1.53003 * 109.47072 * 184.99844 * 3 2 1 7 7 N 1.46492 * 109.47193 * 180.02562 * 6 3 2 8 8 C 1.40002 * 120.00165 * 180.02562 * 7 6 3 9 9 C 1.38650 * 120.09787 * 359.72509 * 8 7 6 10 10 C 1.38284 * 120.00206 * 179.70196 * 9 8 7 11 11 C 1.38264 * 120.20802 * 0.59458 * 10 9 8 12 12 C 1.38254 * 120.19576 * 359.68358 * 11 10 9 13 13 C 1.38733 * 119.99132 * 0.02562 * 12 11 10 14 14 S 1.76198 * 120.10023 * 179.97438 * 13 12 11 15 15 C 1.81404 * 103.00017 * 354.28206 * 14 13 12 16 16 H 1.09007 * 109.46943 * 52.12605 * 15 14 13 17 17 C 1.52995 * 109.47146 * 172.12148 * 15 14 13 18 18 C 1.50697 * 109.47151 * 292.12616 * 15 14 13 19 19 H 1.07998 * 120.00122 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99840 * 179.97438 * 18 15 14 21 21 N 1.31512 * 120.00223 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 120.00035 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47112 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47047 * 119.99983 * 22 20 18 25 25 H 1.48498 * 109.47371 * 240.00042 * 22 20 18 26 26 H 1.09004 * 109.46926 * 59.99793 * 1 2 3 27 27 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46820 * 299.99483 * 1 2 3 29 29 H 1.09005 * 109.47169 * 240.00188 * 2 1 3 30 30 H 1.08995 * 109.47120 * 120.00243 * 2 1 3 31 31 H 0.96701 * 114.00221 * 59.99211 * 5 3 2 32 32 H 1.08997 * 109.46964 * 300.00514 * 6 3 2 33 33 H 1.09001 * 109.46655 * 60.00141 * 6 3 2 34 34 H 0.97004 * 120.00186 * 0.02562 * 7 6 3 35 35 H 1.08002 * 119.99741 * 359.97438 * 9 8 7 36 36 H 1.08003 * 119.89878 * 180.32461 * 10 9 8 37 37 H 1.07996 * 119.90810 * 179.70350 * 11 10 9 38 38 H 1.08003 * 120.00299 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47430 * 186.03246 * 17 15 14 40 40 H 1.08998 * 109.47378 * 306.03533 * 17 15 14 41 41 H 1.09003 * 109.47260 * 66.03561 * 17 15 14 42 42 H 0.97001 * 119.99928 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4444 -0.1257 7 7 4.0532 2.8255 -0.1251 8 6 5.4252 3.0830 -0.2311 9 6 6.3242 2.0321 -0.3311 10 6 7.6784 2.2888 -0.4420 11 6 8.1419 3.5915 -0.4413 12 6 7.2535 4.6456 -0.3362 13 6 5.8926 4.3976 -0.2306 14 16 4.7579 5.7388 -0.0959 15 6 5.8473 7.1835 0.0340 16 1 6.5646 7.1726 -0.7867 17 6 5.0097 8.4619 -0.0379 18 6 6.5855 7.1396 1.3470 19 1 6.4160 6.3245 2.0348 20 6 7.4773 8.1402 1.6702 21 7 7.6841 9.1326 0.8324 22 14 8.3919 8.0863 3.2981 23 1 7.9847 6.8750 4.0547 24 1 9.8542 8.0417 3.0432 25 1 8.0643 9.2987 4.0904 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0141 1.6541 2.0139 32 1 3.9994 0.9053 0.7161 33 1 3.8532 0.9571 -1.0571 34 1 3.4259 3.5618 -0.0512 35 1 5.9663 1.0131 -0.3269 36 1 8.3767 1.4691 -0.5251 37 1 9.2010 3.7862 -0.5233 38 1 7.6189 5.6619 -0.3363 39 1 5.6707 9.3281 -0.0678 40 1 4.3944 8.4431 -0.9374 41 1 4.3674 8.5252 0.8405 42 1 8.3118 9.8364 1.0597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:08 Heat of formation + Delta-G solvation = -61.288346 kcal Electronic energy + Delta-G solvation = -21386.184462 eV Core-core repulsion = 18262.667659 eV Total energy + Delta-G solvation = -3123.516803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27449 -38.97359 -36.27702 -35.72273 -33.72770 -32.41460 -31.77590 -30.80802 -28.16318 -27.34384 -24.75808 -23.76015 -23.20899 -22.25202 -21.92625 -18.67977 -18.41593 -17.67678 -17.39343 -17.11326 -16.91222 -16.29847 -15.71671 -15.42897 -15.11463 -14.91958 -14.79044 -14.69338 -14.39033 -14.07188 -13.51352 -13.39106 -13.23380 -13.02348 -12.88820 -12.86724 -12.72949 -12.39901 -12.33153 -12.15201 -11.82745 -11.73794 -11.54077 -11.27980 -10.98820 -10.89469 -10.80681 -10.51150 -10.29096 -8.72171 -8.22636 -7.71993 -6.33737 0.53065 0.77955 1.11520 1.36584 1.39213 1.50665 1.95359 2.39064 2.55128 3.01674 3.09169 3.52996 3.70720 4.02730 4.10892 4.11395 4.31498 4.41787 4.52692 4.57495 4.61217 4.67191 4.72737 4.83452 4.85460 4.88416 4.89846 4.94871 5.11467 5.17286 5.30409 5.33944 5.37351 5.42090 5.57168 5.60165 5.76642 5.81551 6.04039 6.05492 6.51260 6.68075 6.74091 6.85808 7.32428 8.84893 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.004127 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.256423 B = 6783.126795 C = 7428.614823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.099 3.901 4 H 0.091 0.909 5 O -0.575 6.575 6 C 0.095 3.905 7 N -0.743 5.743 8 C 0.218 3.782 9 C -0.191 4.191 10 C -0.078 4.078 11 C -0.179 4.179 12 C -0.090 4.090 13 C -0.156 4.156 14 S -0.198 6.198 15 C 0.096 3.904 16 H 0.022 0.978 17 C -0.114 4.114 18 C -0.519 4.519 19 H 0.049 0.951 20 C 0.028 3.972 21 N -0.911 5.911 22 Si 0.953 3.047 23 H -0.274 1.274 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.386 0.614 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -19.610 -2.429 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.040 3.960 4 H 0.109 0.891 5 O -0.382 6.382 6 C -0.029 4.029 7 N -0.374 5.374 8 C 0.109 3.891 9 C -0.216 4.216 10 C -0.098 4.098 11 C -0.200 4.200 12 C -0.114 4.114 13 C -0.272 4.272 14 S 0.046 5.954 15 C -0.032 4.032 16 H 0.040 0.960 17 C -0.173 4.173 18 C -0.558 4.558 19 H 0.068 0.932 20 C -0.174 4.174 21 N -0.549 5.549 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.201 1.201 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.060 -19.170 -2.859 21.395 hybrid contribution 2.059 0.715 1.137 2.458 sum -7.001 -18.455 -1.722 19.814 Atomic orbital electron populations 1.21696 0.95121 1.02029 1.01816 1.22096 0.96997 0.94815 1.04252 1.22187 0.91513 0.94708 0.87626 0.89087 1.86604 1.76915 1.58253 1.16436 1.22216 0.95273 0.82768 1.02646 1.44776 1.02924 1.08091 1.81563 1.17568 0.85444 0.90968 0.95156 1.20766 0.92758 0.97665 1.10382 1.21195 0.95317 0.96336 0.96990 1.21033 0.99386 0.92864 1.06758 1.21239 0.92197 1.00078 0.97927 1.21195 0.96916 0.94974 1.14149 1.84121 1.17293 1.02003 1.92003 1.20812 0.93696 0.89829 0.98889 0.96002 1.21478 0.98435 0.98936 0.98496 1.21305 1.23694 1.08440 1.02383 0.93247 1.25619 0.97050 0.94736 0.99969 1.69975 1.36003 1.11935 1.37027 0.85561 0.78488 0.78033 0.80024 1.19890 1.20164 1.20139 0.93161 0.91516 0.93085 0.89459 0.90119 0.76502 0.91049 0.90298 0.76636 0.83218 0.82851 0.85510 0.87454 0.90396 0.94348 0.94594 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.18 16 2 C -0.14 -1.63 5.61 30.60 0.17 -1.46 16 3 C 0.10 1.70 3.05 30.60 0.09 1.79 16 4 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 5 O -0.57 -12.09 12.62 -148.98 -1.88 -13.97 16 6 C 0.09 1.80 4.58 86.38 0.40 2.20 16 7 N -0.74 -21.79 5.58 -338.84 -1.89 -23.68 16 8 C 0.22 7.53 6.66 38.24 0.25 7.79 16 9 C -0.19 -5.42 9.31 22.38 0.21 -5.21 16 10 C -0.08 -2.19 10.04 22.29 0.22 -1.97 16 11 C -0.18 -6.28 10.04 22.28 0.22 -6.06 16 12 C -0.09 -3.92 8.80 22.39 0.20 -3.73 16 13 C -0.16 -6.62 6.05 22.70 0.14 -6.48 16 14 S -0.20 -8.99 19.77 -56.49 -1.12 -10.11 16 15 C 0.10 4.97 2.01 29.85 0.06 5.03 16 16 H 0.02 1.24 7.00 -2.39 -0.02 1.22 16 17 C -0.11 -5.63 8.88 71.98 0.64 -4.99 16 18 C -0.52 -28.77 6.90 25.60 0.18 -28.59 16 19 H 0.05 2.86 7.71 -2.91 -0.02 2.84 16 20 C 0.03 1.51 5.30 84.65 0.45 1.96 16 21 N -0.91 -51.19 11.39 21.45 0.24 -50.95 16 22 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.39 5.76 9.05 -74.06 -0.67 5.09 16 32 H 0.07 1.19 7.94 -2.39 -0.02 1.17 16 33 H 0.08 1.29 7.96 -2.39 -0.02 1.27 16 34 H 0.40 13.16 6.89 -92.71 -0.64 12.52 16 35 H 0.15 3.10 6.74 -2.91 -0.02 3.08 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.11 5.40 5.09 -2.91 -0.01 5.39 16 39 H 0.08 4.13 6.26 -2.39 -0.01 4.11 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.27 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -64.19 351.15 1.04 -63.16 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.29 Total: 30.52 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.94 Total: -40.90 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.64 Total: -74.62 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.88 Total: -13.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.12 Total: -10.11 kcal Total: -64.19 1.04 -63.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.869 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds