Wall clock time and date at job start Tue Mar 31 2020 08:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 H 1.09002 * 109.46813 * 304.99363 * 3 2 1 5 5 O 1.42898 * 109.47561 * 64.99382 * 3 2 1 6 6 C 1.52995 * 109.46929 * 184.99820 * 3 2 1 7 7 N 1.46504 * 109.47512 * 179.97438 * 6 3 2 8 8 C 1.40003 * 120.00398 * 179.97438 * 7 6 3 9 9 C 1.38640 * 120.09492 * 359.97438 * 8 7 6 10 10 C 1.38293 * 119.99976 * 179.72317 * 9 8 7 11 11 C 1.38265 * 120.20379 * 0.25201 * 10 9 8 12 12 C 1.38245 * 120.20142 * 0.02562 * 11 10 9 13 13 C 1.38731 * 119.98939 * 359.97438 * 12 11 10 14 14 S 1.76205 * 120.09938 * 180.02562 * 13 12 11 15 15 C 1.81401 * 102.99998 * 353.33064 * 14 13 12 16 16 H 1.08999 * 109.46844 * 48.27771 * 15 14 13 17 17 C 1.53001 * 109.46967 * 288.27316 * 15 14 13 18 18 C 1.50702 * 109.46893 * 168.27849 * 15 14 13 19 19 H 1.08004 * 120.00264 * 2.68339 * 18 15 14 20 20 C 1.37879 * 119.99655 * 182.68822 * 18 15 14 21 21 N 1.31514 * 119.99513 * 201.48099 * 20 18 15 22 22 Si 1.86796 * 120.00432 * 21.47875 * 20 18 15 23 23 H 1.48501 * 109.46953 * 93.04287 * 22 20 18 24 24 H 1.48495 * 109.47457 * 213.04789 * 22 20 18 25 25 H 1.48502 * 109.46862 * 333.04712 * 22 20 18 26 26 H 1.08997 * 109.47363 * 300.00127 * 1 2 3 27 27 H 1.08997 * 109.46642 * 60.00884 * 1 2 3 28 28 H 1.09003 * 109.46416 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47686 * 239.99810 * 2 1 3 30 30 H 1.08997 * 109.46642 * 119.99116 * 2 1 3 31 31 H 0.96699 * 113.99759 * 60.00031 * 5 3 2 32 32 H 1.09000 * 109.47495 * 59.99601 * 6 3 2 33 33 H 1.09002 * 109.47001 * 299.99429 * 6 3 2 34 34 H 0.97001 * 119.99073 * 359.97438 * 7 6 3 35 35 H 1.07995 * 120.00274 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.89747 * 180.23774 * 10 9 8 37 37 H 1.07995 * 119.90160 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.01097 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.46750 * 55.34644 * 17 15 14 40 40 H 1.09001 * 109.46585 * 175.33984 * 17 15 14 41 41 H 1.08997 * 109.47522 * 295.34679 * 17 15 14 42 42 H 0.97006 * 120.00130 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 3.5647 1.4445 -0.1257 7 7 4.0530 2.8257 -0.1263 8 6 5.4252 3.0831 -0.2315 9 6 6.3237 2.0324 -0.3347 10 6 7.6782 2.2891 -0.4443 11 6 8.1414 3.5918 -0.4462 12 6 7.2533 4.6458 -0.3380 13 6 5.8928 4.3977 -0.2276 14 16 4.7583 5.7389 -0.0902 15 6 5.8479 7.1809 0.0639 16 1 6.6150 7.1409 -0.7093 17 6 6.5120 7.1733 1.4423 18 6 5.0381 8.4417 -0.0964 19 1 3.9680 8.3830 -0.2301 20 6 5.6635 9.6703 -0.0726 21 7 4.9740 10.7536 0.2113 22 14 7.4899 9.7961 -0.4435 23 1 7.6834 10.0757 -1.8891 24 1 8.0830 10.8970 0.3573 25 1 8.1554 8.5155 -0.0937 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 2.0139 1.6545 2.0138 32 1 3.8532 0.9571 -1.0570 33 1 3.9993 0.9055 0.7162 34 1 3.4256 3.5619 -0.0538 35 1 5.9656 1.0136 -0.3344 36 1 8.3764 1.4694 -0.5284 37 1 9.2001 3.7867 -0.5316 38 1 7.6184 5.6622 -0.3402 39 1 7.0296 6.2256 1.5909 40 1 7.2286 7.9923 1.5048 41 1 5.7512 7.2964 2.2130 42 1 5.4140 11.6180 0.2284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591773964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:11 Heat of formation + Delta-G solvation = -37.523988 kcal Electronic energy + Delta-G solvation = -21262.699709 eV Core-core repulsion = 18140.213406 eV Total energy + Delta-G solvation = -3122.486303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.26143 -38.15086 -34.99930 -34.03133 -33.09094 -31.45435 -30.48852 -29.82607 -27.24925 -25.24557 -23.90417 -22.55452 -21.74368 -21.43055 -20.81021 -17.76187 -16.84955 -16.62042 -16.36725 -16.24600 -15.61275 -14.83343 -14.62483 -14.25485 -14.06921 -13.67265 -13.64087 -13.45939 -13.25100 -12.71072 -12.51128 -12.40250 -12.22732 -12.13278 -12.01088 -11.53292 -11.31121 -11.14614 -11.05995 -10.93166 -10.47673 -10.35693 -10.20549 -9.93476 -9.71508 -9.65621 -9.13448 -8.98318 -8.48899 -7.53652 -6.37564 -6.27528 -4.21680 1.65928 1.90546 2.47667 3.19206 3.28366 3.31419 3.42143 3.62157 4.12960 4.21826 4.29353 4.41777 4.66683 4.72679 5.02411 5.03986 5.14468 5.15369 5.31157 5.38240 5.41595 5.54017 5.59108 5.62125 5.78066 5.89848 5.96152 5.98755 6.17949 6.25756 6.37688 6.40948 6.47173 6.64987 6.79667 6.89769 7.09868 7.19904 7.41445 7.46728 7.55400 7.95018 8.24164 8.79681 9.34664 10.84208 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.004105 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.957903 B = 6819.448075 C = 8121.083800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.094 3.906 4 H 0.105 0.895 5 O -0.552 6.552 6 C 0.097 3.903 7 N -0.739 5.739 8 C 0.225 3.775 9 C -0.190 4.190 10 C -0.093 4.093 11 C -0.161 4.161 12 C -0.092 4.092 13 C -0.141 4.141 14 S -0.138 6.138 15 C 0.063 3.937 16 H 0.045 0.955 17 C -0.144 4.144 18 C -0.522 4.522 19 H 0.083 0.917 20 C 0.092 3.908 21 N -0.875 5.875 22 Si 0.861 3.139 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.257 1.257 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.374 0.626 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.409 0.591 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -21.881 0.035 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.035 3.965 4 H 0.123 0.877 5 O -0.357 6.357 6 C -0.029 4.029 7 N -0.372 5.372 8 C 0.117 3.883 9 C -0.215 4.215 10 C -0.115 4.115 11 C -0.183 4.183 12 C -0.117 4.117 13 C -0.258 4.258 14 S 0.108 5.892 15 C -0.066 4.066 16 H 0.063 0.937 17 C -0.204 4.204 18 C -0.560 4.560 19 H 0.101 0.899 20 C -0.114 4.114 21 N -0.510 5.510 22 Si 0.687 3.313 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.182 1.182 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.222 0.778 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.408 -21.356 -0.345 21.495 hybrid contribution 2.535 0.090 0.103 2.538 sum 0.127 -21.267 -0.242 21.268 Atomic orbital electron populations 1.21696 0.94766 1.01474 1.02701 1.22154 0.97451 0.96493 1.02916 1.22203 0.92273 0.93453 0.88603 0.87745 1.86652 1.76531 1.57141 1.15370 1.21977 0.94666 0.84827 1.01402 1.44620 1.03948 1.06731 1.81912 1.17297 0.84056 0.91467 0.95493 1.20411 0.93043 0.96888 1.11129 1.20748 0.94574 0.96345 0.99785 1.20773 0.98945 0.92509 1.06060 1.21147 0.91632 0.99750 0.99163 1.21561 0.97646 0.95889 1.10677 1.85091 1.15005 0.98687 1.90407 1.21264 0.95563 0.93161 0.96578 0.93750 1.22413 1.00151 0.99181 0.98633 1.20296 0.95576 0.86932 1.53215 0.89912 1.24762 0.97872 0.95202 0.93574 1.70001 1.37424 0.99202 1.44362 0.87166 0.86515 0.78541 0.79096 1.20163 1.20884 1.18157 0.91896 0.92587 0.92803 0.90862 0.91435 0.77841 0.91795 0.92394 0.75279 0.86642 0.86752 0.86767 0.85555 0.94830 0.92914 0.92018 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.15 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.09 0.85 3.05 -26.73 -0.08 0.77 16 4 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 5 O -0.55 -5.83 12.62 -35.23 -0.44 -6.27 16 6 C 0.10 0.97 4.58 -4.04 -0.02 0.95 16 7 N -0.74 -10.52 5.58 -58.45 -0.33 -10.85 16 8 C 0.23 3.66 6.66 -83.50 -0.56 3.10 16 9 C -0.19 -2.66 9.31 -39.41 -0.37 -3.03 16 10 C -0.09 -1.26 10.04 -39.55 -0.40 -1.66 16 11 C -0.16 -2.46 10.04 -39.57 -0.40 -2.86 16 12 C -0.09 -1.66 8.13 -39.40 -0.32 -1.98 16 13 C -0.14 -2.66 6.00 -38.92 -0.23 -2.89 16 14 S -0.14 -2.96 19.74 -107.50 -2.12 -5.08 16 15 C 0.06 1.50 1.52 -27.88 -0.04 1.46 16 16 H 0.04 1.06 5.25 -51.92 -0.27 0.79 16 17 C -0.14 -3.20 8.22 37.16 0.31 -2.89 16 18 C -0.52 -14.53 8.98 -34.44 -0.31 -14.84 16 19 H 0.08 2.53 7.96 -52.48 -0.42 2.11 16 20 C 0.09 2.58 5.28 -17.82 -0.09 2.48 16 21 N -0.87 -25.89 13.96 55.43 0.77 -25.11 16 22 Si 0.86 20.55 25.98 -169.99 -4.42 16.13 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.26 -5.76 5.63 56.52 0.32 -5.45 16 26 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.37 2.79 9.05 45.56 0.41 3.20 16 32 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 33 H 0.06 0.53 7.95 -51.93 -0.41 0.11 16 34 H 0.41 6.49 6.90 -40.82 -0.28 6.20 16 35 H 0.12 1.32 6.74 -52.49 -0.35 0.96 16 36 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 2.42 5.06 -52.49 -0.27 2.15 16 39 H 0.03 0.67 6.38 -51.93 -0.33 0.33 16 40 H 0.05 1.17 5.21 -51.93 -0.27 0.90 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -30.50 344.48 -9.25 -39.75 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.61 Total: 9.48 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -2.30 Total: -23.24 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.45 Total: -35.96 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.44 Total: -6.27 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.42 Total: 16.13 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.12 Total: -5.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.50 -9.25 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.230 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds