Wall clock time and date at job start Tue Mar 31 2020 08:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 H 1.09002 * 109.46813 * 304.99363 * 3 2 1 5 5 O 1.42898 * 109.47561 * 64.99382 * 3 2 1 6 6 C 1.52995 * 109.46929 * 184.99820 * 3 2 1 7 7 N 1.46504 * 109.47512 * 179.97438 * 6 3 2 8 8 C 1.40003 * 120.00398 * 179.97438 * 7 6 3 9 9 C 1.38640 * 120.09492 * 359.97438 * 8 7 6 10 10 C 1.38293 * 119.99976 * 179.72317 * 9 8 7 11 11 C 1.38265 * 120.20379 * 0.25201 * 10 9 8 12 12 C 1.38245 * 120.20142 * 0.02562 * 11 10 9 13 13 C 1.38731 * 119.98939 * 359.97438 * 12 11 10 14 14 S 1.76205 * 120.09938 * 180.02562 * 13 12 11 15 15 C 1.81401 * 102.99998 * 353.33064 * 14 13 12 16 16 H 1.08999 * 109.46844 * 48.27771 * 15 14 13 17 17 C 1.53001 * 109.46967 * 288.27316 * 15 14 13 18 18 C 1.50702 * 109.46893 * 168.27849 * 15 14 13 19 19 H 1.08004 * 120.00264 * 2.68339 * 18 15 14 20 20 C 1.37879 * 119.99655 * 182.68822 * 18 15 14 21 21 N 1.31514 * 119.99513 * 201.48099 * 20 18 15 22 22 Si 1.86796 * 120.00432 * 21.47875 * 20 18 15 23 23 H 1.48501 * 109.46953 * 93.04287 * 22 20 18 24 24 H 1.48495 * 109.47457 * 213.04789 * 22 20 18 25 25 H 1.48502 * 109.46862 * 333.04712 * 22 20 18 26 26 H 1.08997 * 109.47363 * 300.00127 * 1 2 3 27 27 H 1.08997 * 109.46642 * 60.00884 * 1 2 3 28 28 H 1.09003 * 109.46416 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47686 * 239.99810 * 2 1 3 30 30 H 1.08997 * 109.46642 * 119.99116 * 2 1 3 31 31 H 0.96699 * 113.99759 * 60.00031 * 5 3 2 32 32 H 1.09000 * 109.47495 * 59.99601 * 6 3 2 33 33 H 1.09002 * 109.47001 * 299.99429 * 6 3 2 34 34 H 0.97001 * 119.99073 * 359.97438 * 7 6 3 35 35 H 1.07995 * 120.00274 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.89747 * 180.23774 * 10 9 8 37 37 H 1.07995 * 119.90160 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.01097 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.46750 * 55.34644 * 17 15 14 40 40 H 1.09001 * 109.46585 * 175.33984 * 17 15 14 41 41 H 1.08997 * 109.47522 * 295.34679 * 17 15 14 42 42 H 0.97006 * 120.00130 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6618 2.0815 1.2209 6 6 3.5647 1.4445 -0.1257 7 7 4.0530 2.8257 -0.1263 8 6 5.4252 3.0831 -0.2315 9 6 6.3237 2.0324 -0.3347 10 6 7.6782 2.2891 -0.4443 11 6 8.1414 3.5918 -0.4462 12 6 7.2533 4.6458 -0.3380 13 6 5.8928 4.3977 -0.2276 14 16 4.7583 5.7389 -0.0902 15 6 5.8479 7.1809 0.0639 16 1 6.6150 7.1409 -0.7093 17 6 6.5120 7.1733 1.4423 18 6 5.0381 8.4417 -0.0964 19 1 3.9680 8.3830 -0.2301 20 6 5.6635 9.6703 -0.0726 21 7 4.9740 10.7536 0.2113 22 14 7.4899 9.7961 -0.4435 23 1 7.6834 10.0757 -1.8891 24 1 8.0830 10.8970 0.3573 25 1 8.1554 8.5155 -0.0937 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 2.0139 1.6545 2.0138 32 1 3.8532 0.9571 -1.0570 33 1 3.9993 0.9055 0.7162 34 1 3.4256 3.5619 -0.0538 35 1 5.9656 1.0136 -0.3344 36 1 8.3764 1.4694 -0.5284 37 1 9.2001 3.7867 -0.5316 38 1 7.6184 5.6622 -0.3402 39 1 7.0296 6.2256 1.5909 40 1 7.2286 7.9923 1.5048 41 1 5.7512 7.2964 2.2130 42 1 5.4140 11.6180 0.2284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591773964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:11 Heat of formation + Delta-G solvation = -57.877445 kcal Electronic energy + Delta-G solvation = -21263.582301 eV Core-core repulsion = 18140.213406 eV Total energy + Delta-G solvation = -3123.368896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.33505 -39.01017 -36.32356 -35.74041 -33.74471 -33.38326 -31.76279 -30.85094 -28.18821 -27.28234 -24.78231 -23.72534 -23.26197 -22.28113 -22.09289 -19.31288 -18.44647 -17.71156 -17.49750 -17.12859 -16.87091 -16.26264 -15.83453 -15.52800 -15.15360 -15.00123 -14.84948 -14.74353 -14.47694 -14.14280 -13.95111 -13.73263 -13.31589 -13.06424 -13.01363 -12.90520 -12.85434 -12.40559 -12.36319 -11.91692 -11.83764 -11.71633 -11.67940 -11.43913 -11.01706 -10.91631 -10.76248 -10.64732 -10.38802 -8.78875 -8.44009 -7.83599 -6.43665 0.44160 0.72546 0.90874 1.28992 1.34441 1.42625 1.89206 2.27008 2.51599 2.88541 2.95198 3.52075 3.68599 3.98038 4.02871 4.10071 4.26205 4.34342 4.40555 4.49852 4.51387 4.55976 4.57425 4.65859 4.66088 4.79718 4.87689 4.91596 4.93664 5.05925 5.10198 5.29103 5.29281 5.34833 5.41105 5.44808 5.50736 5.73118 5.99108 6.06826 6.47024 6.54541 6.69859 6.84892 7.15924 8.72036 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.004105 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.957903 B = 6819.448075 C = 8121.083800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.097 3.903 4 H 0.087 0.913 5 O -0.575 6.575 6 C 0.095 3.905 7 N -0.745 5.745 8 C 0.220 3.780 9 C -0.186 4.186 10 C -0.077 4.077 11 C -0.168 4.168 12 C -0.108 4.108 13 C -0.170 4.170 14 S -0.172 6.172 15 C 0.066 3.934 16 H 0.045 0.955 17 C -0.135 4.135 18 C -0.534 4.534 19 H 0.036 0.964 20 C 0.040 3.960 21 N -0.922 5.922 22 Si 0.927 3.073 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.234 1.234 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.386 0.614 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.397 0.603 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -25.624 -0.119 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.037 3.963 4 H 0.105 0.895 5 O -0.383 6.383 6 C -0.028 4.028 7 N -0.375 5.375 8 C 0.111 3.889 9 C -0.210 4.210 10 C -0.098 4.098 11 C -0.189 4.189 12 C -0.133 4.133 13 C -0.287 4.287 14 S 0.072 5.928 15 C -0.063 4.063 16 H 0.063 0.937 17 C -0.194 4.194 18 C -0.572 4.572 19 H 0.055 0.945 20 C -0.162 4.162 21 N -0.559 5.559 22 Si 0.749 3.251 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.157 1.157 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.233 0.767 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.181 -25.157 -0.495 25.162 hybrid contribution 1.630 1.093 0.141 1.967 sum 1.810 -24.064 -0.354 24.135 Atomic orbital electron populations 1.21703 0.95308 1.02030 1.01737 1.22087 0.96862 0.94762 1.04338 1.22194 0.91782 0.94708 0.87579 0.89477 1.86625 1.76974 1.58216 1.16444 1.22218 0.95082 0.82725 1.02815 1.44862 1.03203 1.08147 1.81281 1.17569 0.85283 0.91033 0.95063 1.20821 0.92931 0.97652 1.09645 1.21248 0.95095 0.96751 0.96662 1.21066 0.99688 0.92497 1.05668 1.21159 0.91836 0.99975 1.00317 1.21481 0.97267 0.95384 1.14555 1.85025 1.16328 0.99683 1.91724 1.21035 0.95316 0.92519 0.97383 0.93689 1.22272 0.99699 1.00336 0.97079 1.20454 0.94036 0.89402 1.53316 0.94535 1.25643 1.03109 0.94540 0.92925 1.70117 1.39918 1.00021 1.45894 0.86113 0.80295 0.79705 0.79000 1.19705 1.20075 1.15654 0.93127 0.93361 0.91445 0.89436 0.89882 0.76438 0.90267 0.90560 0.76730 0.83325 0.82682 0.84457 0.87295 0.92614 0.92866 0.93359 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.81 71.98 0.71 -1.22 16 2 C -0.14 -1.55 5.61 30.60 0.17 -1.38 16 3 C 0.10 1.62 3.05 30.59 0.09 1.71 16 4 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 5 O -0.58 -11.90 12.62 -148.98 -1.88 -13.78 16 6 C 0.10 1.66 4.58 86.38 0.40 2.05 16 7 N -0.74 -20.34 5.58 -338.83 -1.89 -22.23 16 8 C 0.22 6.72 6.66 38.24 0.25 6.97 16 9 C -0.19 -4.41 9.31 22.38 0.21 -4.20 16 10 C -0.08 -1.70 10.04 22.29 0.22 -1.48 16 11 C -0.17 -4.52 10.04 22.28 0.22 -4.30 16 12 C -0.11 -3.77 8.13 22.39 0.18 -3.59 16 13 C -0.17 -6.32 6.00 22.70 0.14 -6.19 16 14 S -0.17 -7.65 19.74 -56.49 -1.12 -8.76 16 15 C 0.07 3.24 1.52 29.85 0.05 3.29 16 16 H 0.05 2.18 5.25 -2.39 -0.01 2.16 16 17 C -0.13 -5.99 8.22 71.98 0.59 -5.39 16 18 C -0.53 -31.21 8.98 25.60 0.23 -30.98 16 19 H 0.04 2.41 7.96 -2.91 -0.02 2.38 16 20 C 0.04 2.31 5.28 84.66 0.45 2.75 16 21 N -0.92 -56.74 13.96 21.45 0.30 -56.44 16 22 Si 0.93 42.72 25.98 68.60 1.78 44.50 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.23 -9.79 5.63 99.48 0.56 -9.23 16 26 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.39 5.37 9.05 -74.06 -0.67 4.70 16 32 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 33 H 0.08 1.08 7.95 -2.39 -0.02 1.06 16 34 H 0.40 12.80 6.90 -92.71 -0.64 12.16 16 35 H 0.15 2.52 6.74 -2.91 -0.02 2.50 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.11 4.09 5.06 -2.91 -0.01 4.07 16 39 H 0.05 2.20 6.38 -2.39 -0.02 2.18 16 40 H 0.05 2.31 5.21 -2.39 -0.01 2.30 16 41 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -69.80 344.48 0.68 -69.12 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.42 Total: 29.54 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.91 Total: -41.95 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.59 Total: -78.67 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.88 Total: -13.78 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.78 Total: 44.50 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.12 Total: -8.76 kcal Total: -69.80 0.68 -69.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591773964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.242 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds