Wall clock time and date at job start Tue Mar 31 2020 08:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 S 1.81400 * 109.47145 * 240.00595 * 2 1 3 6 6 O 1.42108 * 109.46832 * 303.60746 * 5 2 1 7 7 C 1.81401 * 103.00225 * 59.99551 * 5 2 1 8 8 C 1.50701 * 109.46853 * 180.02562 * 7 5 2 9 9 C 1.38309 * 119.96213 * 269.72354 * 8 7 5 10 10 C 1.38266 * 120.14792 * 179.72907 * 9 8 7 11 11 C 1.38123 * 120.07486 * 0.54952 * 10 9 8 12 12 C 1.38896 * 119.92448 * 359.72715 * 11 10 9 13 13 N 1.39670 * 120.07520 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47237 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99503 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00155 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00109 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47252 * 89.99663 * 19 17 15 21 21 H 1.48497 * 109.47494 * 209.99903 * 19 17 15 22 22 H 1.48507 * 109.47166 * 329.99934 * 19 17 15 23 23 C 1.38082 * 119.96012 * 90.00483 * 8 7 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.08997 * 109.47110 * 300.00260 * 7 5 2 34 34 H 1.08998 * 109.47157 * 60.00076 * 7 5 2 35 35 H 1.07995 * 119.92389 * 359.97438 * 9 8 7 36 36 H 1.07994 * 119.95995 * 180.28175 * 10 9 8 37 37 H 1.08001 * 120.03860 * 179.75122 * 11 10 9 38 38 H 0.96993 * 120.00281 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.47125 * 300.00021 * 14 13 12 40 40 H 1.09002 * 109.47349 * 59.99875 * 14 13 12 41 41 H 0.96995 * 120.00484 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.03985 * 359.96954 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 2.1347 -0.8550 -1.4812 6 8 1.5934 -2.1682 -1.5242 7 6 1.4375 0.1310 -2.8348 8 6 1.8561 -0.4620 -4.1555 9 6 3.0236 -0.0381 -4.7640 10 6 3.4142 -0.5836 -5.9730 11 6 2.6332 -1.5459 -6.5827 12 6 1.4573 -1.9698 -5.9771 13 7 0.6655 -2.9431 -6.5906 14 6 1.0747 -3.5179 -7.8746 15 6 0.0562 -4.5370 -8.3163 16 1 -0.8092 -4.7368 -7.7018 17 6 0.2296 -5.2149 -9.5042 18 7 1.2837 -4.9719 -10.2522 19 14 -1.0325 -6.4786 -10.0514 20 1 -2.0765 -5.8127 -10.8710 21 1 -0.3632 -7.5287 -10.8603 22 1 -1.6614 -7.0991 -8.8577 23 6 1.0706 -1.4237 -4.7595 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 0.3498 0.1277 -2.7638 34 1 1.8030 1.1554 -2.7639 35 1 3.6335 0.7178 -4.2918 36 1 4.3287 -0.2536 -6.4431 37 1 2.9369 -1.9687 -7.5290 38 1 -0.1553 -3.2386 -6.1667 39 1 1.1449 -2.7267 -8.6209 40 1 2.0461 -4.0000 -7.7638 41 1 1.4059 -5.4491 -11.0878 42 1 0.1571 -1.7512 -4.2859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591775810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:35 Heat of formation + Delta-G solvation = -31.588978 kcal Electronic energy + Delta-G solvation = -21013.222682 eV Core-core repulsion = 17890.993740 eV Total energy + Delta-G solvation = -3122.228942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.93216 -36.47638 -35.69162 -35.24040 -32.77960 -31.93966 -29.42429 -27.92243 -27.62550 -26.39751 -26.24350 -22.75775 -21.86597 -21.12713 -19.87717 -17.33023 -17.14336 -16.23663 -15.93758 -15.39556 -15.18425 -14.81781 -14.70471 -14.48120 -14.17931 -13.70823 -13.34211 -13.19920 -13.00736 -12.78818 -12.59465 -12.53131 -12.29252 -12.12179 -12.02371 -11.81709 -11.60579 -11.32837 -11.23749 -11.12580 -10.94757 -10.79252 -10.57108 -10.18586 -10.02533 -9.38945 -9.35679 -8.55054 -8.49279 -7.96447 -6.55133 -6.20552 -4.25507 1.23363 2.05145 2.21605 2.58645 3.23379 3.29552 3.33120 3.74706 4.25789 4.41690 4.44438 4.49034 4.55080 4.81437 4.92294 5.00296 5.16669 5.23919 5.26594 5.40411 5.44902 5.47765 5.50517 5.56581 5.63801 5.70140 5.77999 5.86520 5.90799 5.94912 6.12182 6.36174 6.48066 6.96146 6.97701 7.08896 7.14654 7.43215 7.45358 7.66935 7.95315 8.30928 8.67906 8.90887 9.40795 10.90143 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.003010 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.457767 B = 9298.682227 C = 9971.284144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.396 4.396 3 C -0.122 4.122 4 C -0.123 4.123 5 S 1.253 4.747 6 O -0.830 6.830 7 C -0.397 4.397 8 C -0.029 4.029 9 C -0.200 4.200 10 C -0.068 4.068 11 C -0.201 4.201 12 C 0.236 3.764 13 N -0.729 5.729 14 C 0.251 3.749 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.204 4.204 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.391 0.609 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 15.033 19.794 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.493 4.493 3 C -0.180 4.180 4 C -0.182 4.182 5 S 1.451 4.549 6 O -0.825 6.825 7 C -0.533 4.533 8 C -0.031 4.031 9 C -0.222 4.222 10 C -0.087 4.087 11 C -0.225 4.225 12 C 0.127 3.873 13 N -0.351 5.351 14 C 0.130 3.870 15 C -0.578 4.578 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.229 4.229 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.224 0.776 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.259 14.028 19.386 24.734 hybrid contribution -3.385 -0.762 -0.188 3.475 sum 2.874 13.266 19.198 23.512 Atomic orbital electron populations 1.21915 0.93084 1.02539 1.02591 1.27288 1.02198 1.05681 1.14143 1.21573 1.01583 0.92173 1.02660 1.21515 1.01243 1.00054 0.95347 1.70834 1.15505 0.83754 0.84813 1.93145 1.78825 1.27144 1.83375 1.26645 1.08633 1.10310 1.07706 1.18579 0.95196 0.96136 0.93162 1.20513 0.98440 1.05049 0.98176 1.20783 0.98233 0.95109 0.94580 1.20800 0.96212 1.02827 1.02631 1.18019 0.90569 0.88040 0.90719 1.45547 1.24849 1.40337 1.24332 1.19118 0.96119 0.92910 0.78885 1.21210 1.08096 1.22297 1.06156 0.92029 1.24922 0.95843 0.97083 0.96105 1.69939 1.27456 1.41937 1.13368 0.86408 0.81002 0.80771 0.78737 1.20450 1.20920 1.19749 1.20368 1.02547 1.03047 0.96937 0.92370 0.92174 0.92096 0.92100 0.91066 0.91970 0.92246 0.91472 0.91836 0.88921 0.85851 0.86610 0.86517 0.85708 0.77579 0.96107 0.96078 0.92454 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.29 37.16 0.31 -1.05 16 2 C -0.40 -3.19 0.94 -90.62 -0.08 -3.28 16 3 C -0.12 -0.64 8.32 37.16 0.31 -0.33 16 4 C -0.12 -0.94 8.48 37.16 0.32 -0.62 16 5 S 1.25 13.17 12.08 -107.50 -1.30 11.87 16 6 O -0.83 -14.40 18.10 -35.23 -0.64 -15.04 16 7 C -0.40 -4.36 5.16 36.01 0.19 -4.17 16 8 C -0.03 -0.43 5.14 -104.65 -0.54 -0.97 16 9 C -0.20 -2.74 9.70 -39.54 -0.38 -3.12 16 10 C -0.07 -1.05 10.04 -39.61 -0.40 -1.45 16 11 C -0.20 -3.86 9.31 -39.38 -0.37 -4.23 16 12 C 0.24 4.86 6.65 -83.79 -0.56 4.31 16 13 N -0.73 -16.53 5.73 -59.80 -0.34 -16.87 16 14 C 0.25 6.57 4.67 -5.19 -0.02 6.55 16 15 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 16 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.20 -3.77 9.55 -39.38 -0.38 -4.15 16 24 H 0.06 0.52 6.68 -51.93 -0.35 0.18 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.29 6.68 -51.93 -0.35 -0.06 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.08 6.94 -51.93 -0.36 0.72 16 34 H 0.12 0.91 6.94 -51.93 -0.36 0.55 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.12 2.54 6.73 -52.49 -0.35 2.18 16 38 H 0.39 8.47 8.33 -40.82 -0.34 8.13 16 39 H 0.02 0.58 7.95 -51.93 -0.41 0.17 16 40 H 0.02 0.59 7.95 -51.93 -0.41 0.18 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 42 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -34.36 356.28 -9.91 -44.28 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.69 Total: 5.45 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -2.03 Total: -26.20 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.39 Total: -42.05 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.64 Total: -15.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 13.17 SS G_CDS: -1.30 Total: 11.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.36 -9.91 -44.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591775810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.686 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds