Wall clock time and date at job start Tue Mar 31 2020 08:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 S 1.81400 * 109.47145 * 240.00595 * 2 1 3 6 6 O 1.42108 * 109.46832 * 303.60746 * 5 2 1 7 7 C 1.81401 * 103.00225 * 59.99551 * 5 2 1 8 8 C 1.50701 * 109.46853 * 180.02562 * 7 5 2 9 9 C 1.38309 * 119.96213 * 269.72354 * 8 7 5 10 10 C 1.38266 * 120.14792 * 179.72907 * 9 8 7 11 11 C 1.38123 * 120.07486 * 0.54952 * 10 9 8 12 12 C 1.38896 * 119.92448 * 359.72715 * 11 10 9 13 13 N 1.39670 * 120.07520 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47237 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99503 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00155 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00109 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47252 * 89.99663 * 19 17 15 21 21 H 1.48497 * 109.47494 * 209.99903 * 19 17 15 22 22 H 1.48507 * 109.47166 * 329.99934 * 19 17 15 23 23 C 1.38082 * 119.96012 * 90.00483 * 8 7 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.08997 * 109.47110 * 300.00260 * 7 5 2 34 34 H 1.08998 * 109.47157 * 60.00076 * 7 5 2 35 35 H 1.07995 * 119.92389 * 359.97438 * 9 8 7 36 36 H 1.07994 * 119.95995 * 180.28175 * 10 9 8 37 37 H 1.08001 * 120.03860 * 179.75122 * 11 10 9 38 38 H 0.96993 * 120.00281 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.47125 * 300.00021 * 14 13 12 40 40 H 1.09002 * 109.47349 * 59.99875 * 14 13 12 41 41 H 0.96995 * 120.00484 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.03985 * 359.96954 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 2.1347 -0.8550 -1.4812 6 8 1.5934 -2.1682 -1.5242 7 6 1.4375 0.1310 -2.8348 8 6 1.8561 -0.4620 -4.1555 9 6 3.0236 -0.0381 -4.7640 10 6 3.4142 -0.5836 -5.9730 11 6 2.6332 -1.5459 -6.5827 12 6 1.4573 -1.9698 -5.9771 13 7 0.6655 -2.9431 -6.5906 14 6 1.0747 -3.5179 -7.8746 15 6 0.0562 -4.5370 -8.3163 16 1 -0.8092 -4.7368 -7.7018 17 6 0.2296 -5.2149 -9.5042 18 7 1.2837 -4.9719 -10.2522 19 14 -1.0325 -6.4786 -10.0514 20 1 -2.0765 -5.8127 -10.8710 21 1 -0.3632 -7.5287 -10.8603 22 1 -1.6614 -7.0991 -8.8577 23 6 1.0706 -1.4237 -4.7595 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 0.3498 0.1277 -2.7638 34 1 1.8030 1.1554 -2.7639 35 1 3.6335 0.7178 -4.2918 36 1 4.3287 -0.2536 -6.4431 37 1 2.9369 -1.9687 -7.5290 38 1 -0.1553 -3.2386 -6.1667 39 1 1.1449 -2.7267 -8.6209 40 1 2.0461 -4.0000 -7.7638 41 1 1.4059 -5.4491 -11.0878 42 1 0.1571 -1.7512 -4.2859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591775810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:34 Heat of formation + Delta-G solvation = -55.168535 kcal Electronic energy + Delta-G solvation = -21014.245169 eV Core-core repulsion = 17890.993740 eV Total energy + Delta-G solvation = -3123.251428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32725 -37.12086 -36.92808 -36.80012 -34.76433 -33.23354 -31.08966 -28.75843 -28.22060 -28.07913 -27.38338 -24.69302 -23.24731 -21.94869 -21.22002 -19.13762 -18.13950 -17.54838 -17.12324 -16.92016 -16.64878 -16.16608 -15.80943 -15.36797 -15.12296 -14.95649 -14.87034 -14.63132 -14.26986 -14.11885 -13.91468 -13.57532 -13.44191 -13.17547 -12.94435 -12.89200 -12.82885 -12.69342 -12.47111 -12.39675 -12.03405 -11.92630 -11.87456 -11.79992 -11.49125 -11.27462 -10.87148 -10.53304 -9.64204 -9.03058 -8.36554 -8.17955 -6.50987 0.20141 0.79394 0.98512 1.35167 1.37159 1.48501 1.74500 2.29133 2.84229 2.87917 2.97452 3.09466 3.74972 3.78414 3.83911 4.05589 4.21611 4.25480 4.41759 4.57119 4.64246 4.66503 4.74375 4.76820 4.84335 4.84733 4.88354 5.00827 5.06451 5.08243 5.17740 5.22552 5.23337 5.29545 5.47754 5.52860 5.53854 5.71007 5.77895 5.82369 6.18476 6.43318 6.71223 7.06082 7.22296 8.75445 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.003010 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.457767 B = 9298.682227 C = 9971.284144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.380 4.380 3 C -0.126 4.126 4 C -0.130 4.130 5 S 1.282 4.718 6 O -0.910 6.910 7 C -0.395 4.395 8 C -0.027 4.027 9 C -0.174 4.174 10 C -0.064 4.064 11 C -0.228 4.228 12 C 0.199 3.801 13 N -0.743 5.743 14 C 0.276 3.724 15 C -0.564 4.564 16 H 0.064 0.936 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.979 3.021 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.222 4.222 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.153 0.847 37 H 0.098 0.902 38 H 0.390 0.610 39 H -0.006 1.006 40 H -0.010 1.010 41 H 0.271 0.729 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 18.122 21.858 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.479 4.479 3 C -0.184 4.184 4 C -0.188 4.188 5 S 1.484 4.516 6 O -0.906 6.906 7 C -0.531 4.531 8 C -0.029 4.029 9 C -0.195 4.195 10 C -0.082 4.082 11 C -0.252 4.252 12 C 0.094 3.906 13 N -0.369 5.369 14 C 0.153 3.847 15 C -0.602 4.602 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.802 3.198 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.191 1.191 23 C -0.246 4.246 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.224 0.776 39 H 0.011 0.989 40 H 0.008 0.992 41 H 0.080 0.920 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.424 17.142 21.464 28.455 hybrid contribution -3.657 -1.509 -0.623 4.005 sum 3.767 15.633 20.842 26.324 Atomic orbital electron populations 1.21995 0.94413 1.00688 1.03684 1.27155 1.01108 1.07572 1.12105 1.21716 1.03619 0.89167 1.03855 1.21624 1.03024 0.98459 0.95720 1.69759 1.14804 0.81731 0.85311 1.93046 1.80460 1.31996 1.85104 1.26726 1.08464 1.12684 1.05242 1.19051 0.94919 0.94469 0.94504 1.21197 0.97478 1.04258 0.96587 1.21241 0.98580 0.93303 0.95117 1.20875 0.97007 1.04901 1.02440 1.18345 0.91424 0.88789 0.92078 1.45229 1.25750 1.42183 1.23722 1.18536 0.94512 0.91625 0.80022 1.21572 1.08608 1.23130 1.06883 0.91777 1.25918 0.97982 0.99091 0.95919 1.70061 1.29232 1.43012 1.13840 0.85248 0.78241 0.77910 0.78391 1.19370 1.19986 1.19148 1.20496 1.03133 1.04493 0.96522 0.91881 0.95553 0.90465 0.91172 0.88077 0.90647 0.95199 0.88850 0.90235 0.89756 0.80591 0.80461 0.82959 0.88399 0.77646 0.98862 0.99179 0.91988 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.29 71.98 0.60 -2.02 16 2 C -0.38 -5.00 0.94 -10.79 -0.01 -5.01 16 3 C -0.13 -0.61 8.32 71.98 0.60 -0.01 16 4 C -0.13 -1.68 8.48 71.98 0.61 -1.07 16 5 S 1.28 24.45 12.08 -56.49 -0.68 23.77 16 6 O -0.91 -32.69 18.10 -148.98 -2.70 -35.38 16 7 C -0.40 -7.35 5.16 71.24 0.37 -6.99 16 8 C -0.03 -0.77 5.14 -19.88 -0.10 -0.87 16 9 C -0.17 -4.02 9.70 22.29 0.22 -3.81 16 10 C -0.06 -1.85 10.04 22.25 0.22 -1.62 16 11 C -0.23 -9.21 9.31 22.40 0.21 -9.00 16 12 C 0.20 8.75 6.65 38.22 0.25 9.01 16 13 N -0.74 -36.77 5.73 -343.12 -1.96 -38.74 16 14 C 0.28 15.70 4.67 85.63 0.40 16.10 16 15 C -0.56 -33.19 9.28 25.60 0.24 -32.95 16 16 H 0.06 3.64 7.60 -2.91 -0.02 3.61 16 17 C 0.01 0.64 5.46 84.65 0.46 1.10 16 18 N -0.92 -55.81 13.29 21.45 0.28 -55.53 16 19 Si 0.98 44.69 29.54 68.60 2.03 46.71 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.22 -8.49 9.55 22.40 0.21 -8.27 16 24 H 0.06 1.02 6.68 -2.39 -0.02 1.00 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.07 0.21 6.68 -2.39 -0.02 0.19 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.80 6.94 -2.39 -0.02 1.78 16 34 H 0.18 1.39 6.94 -2.39 -0.02 1.38 16 35 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.10 4.37 6.73 -2.91 -0.02 4.35 16 38 H 0.39 18.55 8.33 -92.71 -0.77 17.78 16 39 H -0.01 -0.39 7.95 -2.39 -0.02 -0.41 16 40 H -0.01 -0.59 7.95 -2.39 -0.02 -0.61 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.09 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -83.22 356.28 1.47 -81.74 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.23 Total: 22.82 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 4.28 Total: -45.40 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -1.68 Total: -94.26 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.70 Total: -35.38 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 24.45 SS G_CDS: -0.68 Total: 23.77 kcal Total: -83.22 1.47 -81.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591775810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.575 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds