Wall clock time and date at job start Tue Mar 31 2020 07:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47060 * 2 1 4 4 C 1.53007 * 109.46679 * 119.99613 * 2 1 3 5 5 C 1.53001 * 109.46838 * 175.00346 * 4 2 1 6 6 O 1.42901 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.35946 * 116.99920 * 179.97438 * 6 5 4 8 8 C 1.38807 * 119.98270 * 359.72900 * 7 6 5 9 9 C 1.37987 * 120.05337 * 179.72530 * 8 7 6 10 10 C 1.39146 * 120.01005 * 0.54314 * 9 8 7 11 11 N 1.39482 * 120.02067 * 179.74936 * 10 9 8 12 12 C 1.34776 * 120.00098 * 324.85447 * 11 10 9 13 13 O 1.21785 * 120.00105 * 4.59240 * 12 11 10 14 14 C 1.41737 * 120.00023 * 184.59971 * 12 11 10 15 15 H 1.08001 * 120.00006 * 359.97438 * 14 12 11 16 16 C 1.40137 * 120.00153 * 179.97438 * 14 12 11 17 17 N 1.30628 * 119.99793 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00040 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47335 * 89.99962 * 18 16 14 20 20 H 1.48501 * 109.46915 * 209.99869 * 18 16 14 21 21 H 1.48499 * 109.47322 * 329.99610 * 18 16 14 22 22 C 1.39089 * 119.95738 * 359.72878 * 10 9 8 23 23 C 1.38144 * 119.94952 * 0.02562 * 22 10 9 24 24 F 1.35096 * 120.00166 * 179.97438 * 23 22 10 25 25 H 1.08994 * 109.47408 * 300.00563 * 1 2 3 26 26 H 1.09002 * 109.46702 * 60.00196 * 1 2 3 27 27 H 1.08995 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47408 * 239.99437 * 2 1 3 29 29 H 1.08997 * 109.46757 * 299.99368 * 3 2 1 30 30 H 1.09002 * 109.47341 * 59.99771 * 3 2 1 31 31 H 1.09004 * 109.47092 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47110 * 55.00235 * 4 2 1 33 33 H 1.08999 * 109.47100 * 294.99849 * 4 2 1 34 34 H 1.08999 * 109.46869 * 299.99645 * 5 4 2 35 35 H 1.09003 * 109.47664 * 59.99483 * 5 4 2 36 36 H 1.08001 * 119.97199 * 359.97373 * 8 7 6 37 37 H 1.07998 * 119.99713 * 180.25370 * 9 8 7 38 38 H 0.96993 * 119.99512 * 144.85373 * 11 10 9 39 39 H 0.97001 * 119.99887 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.02405 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8310 1.1882 6 8 4.0410 -1.5051 2.3547 7 6 5.3844 -1.6868 2.4573 8 6 6.2250 -1.2299 1.4517 9 6 7.5892 -1.4086 1.5570 10 6 8.1225 -2.0572 2.6665 11 7 9.5010 -2.2426 2.7707 12 6 10.2344 -2.4809 1.6653 13 8 9.7082 -2.4516 0.5674 14 6 11.6180 -2.7658 1.7806 15 1 12.0848 -2.7915 2.7542 16 6 12.3805 -3.0141 0.6313 17 7 11.8158 -2.9835 -0.5462 18 14 14.2042 -3.3889 0.7833 19 1 14.3982 -4.8541 0.9268 20 1 14.9103 -2.9128 -0.4333 21 1 14.7539 -2.6975 1.9770 22 6 7.2801 -2.5202 3.6718 23 6 5.9151 -2.3360 3.5670 24 9 5.0959 -2.7857 4.5426 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.8532 -1.3940 0.3005 35 1 3.9995 0.1676 1.1422 36 1 5.8113 -0.7306 0.5880 37 1 8.2427 -1.0491 0.7759 38 1 9.9318 -2.1999 3.6386 39 1 12.3435 -3.1557 -1.3418 40 1 7.6930 -3.0235 4.5335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594417326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:38 Heat of formation + Delta-G solvation = -133.795490 kcal Electronic energy + Delta-G solvation = -22947.520107 eV Core-core repulsion = 19254.645982 eV Total energy + Delta-G solvation = -3692.874125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83061 -41.23676 -40.10421 -38.24588 -37.18034 -35.06758 -34.38764 -31.71000 -31.12158 -29.78678 -28.09755 -27.98030 -25.19695 -24.00010 -23.02636 -21.76529 -20.94020 -19.57763 -19.23840 -18.40903 -17.80510 -17.41692 -17.18005 -16.51726 -16.44063 -15.95331 -15.79723 -15.63755 -15.13757 -14.89745 -14.76795 -14.63679 -14.11623 -13.81088 -13.59356 -13.38259 -13.19068 -13.02995 -12.96357 -12.73206 -12.67099 -12.58837 -12.18623 -12.02245 -11.98802 -11.77710 -11.53015 -11.43250 -10.99846 -10.51724 -9.98619 -9.75379 -8.56313 -8.38456 -7.01247 0.14443 0.29114 1.40852 1.41547 1.57739 2.07875 2.21224 2.31921 2.63284 2.83893 3.30368 3.61405 3.73259 3.85379 3.90821 3.99603 4.06947 4.20372 4.24374 4.36230 4.45702 4.48017 4.65152 4.75220 4.81007 4.89315 4.94726 4.99634 5.05032 5.09435 5.22378 5.25141 5.30900 5.39877 5.43358 5.46992 5.54634 5.88675 6.14378 6.22007 6.41456 6.74471 7.37791 8.37296 8.55888 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.002986 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.514542 B = 9374.285714 C =10335.033215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.107 4.107 5 C 0.049 3.951 6 O -0.323 6.323 7 C 0.060 3.940 8 C -0.153 4.153 9 C -0.115 4.115 10 C 0.160 3.840 11 N -0.692 5.692 12 C 0.530 3.470 13 O -0.611 6.611 14 C -0.563 4.563 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.799 5.799 18 Si 1.000 3.000 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.248 1.248 22 C -0.160 4.160 23 C 0.077 3.923 24 F -0.138 7.138 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.155 0.845 37 H 0.121 0.879 38 H 0.408 0.592 39 H 0.279 0.721 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 5.860 3.716 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.212 4.212 4 C -0.145 4.145 5 C -0.026 4.026 6 O -0.238 6.238 7 C 0.014 3.986 8 C -0.172 4.172 9 C -0.137 4.137 10 C 0.062 3.938 11 N -0.337 5.337 12 C 0.340 3.660 13 O -0.498 6.498 14 C -0.598 4.598 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.427 5.427 18 Si 0.819 3.181 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.171 1.171 22 C -0.182 4.182 23 C 0.057 3.943 24 F -0.116 7.116 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.172 0.828 37 H 0.139 0.861 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.513 5.775 2.903 16.806 hybrid contribution 0.984 -0.248 0.226 1.039 sum -14.530 5.527 3.130 15.857 Atomic orbital electron populations 1.21805 0.93722 1.02192 1.02443 1.21047 0.96853 0.96345 0.96795 1.21961 1.01030 0.95666 1.02513 1.21600 0.91115 1.02030 0.99747 1.23185 0.96607 0.96770 0.86010 1.86029 1.17736 1.75166 1.44858 1.18851 0.83849 1.00947 0.94994 1.21103 0.92589 1.04111 0.99372 1.21274 0.95159 0.98521 0.98715 1.17750 0.85240 0.95612 0.95210 1.43655 1.04064 1.74195 1.11765 1.17399 0.88177 0.77978 0.82430 1.90598 1.73509 1.58481 1.27252 1.20564 0.93277 1.50104 0.95812 0.89012 1.26993 1.06088 0.91729 0.93765 1.70149 1.39426 1.33403 0.99738 0.84976 0.74430 0.79421 0.79281 1.18661 1.19657 1.17080 1.20778 0.90101 1.04674 1.02638 1.16646 0.87465 1.03327 0.86906 1.91442 1.72055 1.87498 1.60648 0.92313 0.91654 0.92431 0.90767 0.91666 0.92261 0.92905 0.91014 0.90774 0.91794 0.90898 0.82794 0.86142 0.75580 0.91059 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 2 C -0.09 -1.32 2.92 -10.79 -0.03 -1.35 16 3 C -0.15 -2.13 8.95 71.98 0.64 -1.49 16 4 C -0.11 -1.93 5.05 30.60 0.15 -1.77 16 5 C 0.05 1.11 4.49 71.98 0.32 1.43 16 6 O -0.32 -9.90 10.00 -92.94 -0.93 -10.83 16 7 C 0.06 2.07 6.70 22.61 0.15 2.22 16 8 C -0.15 -5.34 9.03 22.35 0.20 -5.13 16 9 C -0.12 -4.91 8.69 22.43 0.19 -4.72 16 10 C 0.16 6.67 6.30 38.35 0.24 6.91 16 11 N -0.69 -30.73 5.31 -311.35 -1.65 -32.38 16 12 C 0.53 29.38 7.41 85.11 0.63 30.01 16 13 O -0.61 -38.49 12.30 -4.62 -0.06 -38.54 16 14 C -0.56 -30.08 9.31 23.60 0.22 -29.86 16 15 H 0.09 4.34 7.85 -2.91 -0.02 4.31 16 16 C 0.03 1.72 5.50 85.33 0.47 2.19 16 17 N -0.80 -46.21 11.73 21.85 0.26 -45.95 16 18 Si 1.00 38.47 29.56 68.60 2.03 40.50 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 21 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 22 C -0.16 -5.64 9.94 22.45 0.22 -5.42 16 23 C 0.08 2.70 7.31 22.45 0.16 2.87 16 24 F -0.14 -4.70 17.11 44.97 0.77 -3.93 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.79 6.56 -2.38 -0.02 0.77 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.43 7.64 -2.39 -0.02 1.41 16 35 H 0.07 1.52 6.09 -2.39 -0.01 1.51 16 36 H 0.15 4.49 6.29 -2.91 -0.02 4.47 16 37 H 0.12 5.95 6.21 -2.91 -0.02 5.93 16 38 H 0.41 15.12 8.78 -92.71 -0.81 14.30 16 39 H 0.28 14.55 8.29 -92.71 -0.77 13.78 16 40 H 0.16 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -69.38 339.03 4.92 -64.47 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.25 Total: 31.85 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 4.25 Total: -5.19 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.40 Total: -78.33 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.99 Total: -49.37 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.77 Total: -3.93 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -69.38 4.92 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594417326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.327 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds