Wall clock time and date at job start Tue Mar 31 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 C 1.53003 * 109.47289 * 119.99930 * 2 1 3 5 5 C 1.52996 * 109.46767 * 65.00092 * 4 2 1 6 6 O 1.42904 * 109.47234 * 180.02562 * 5 4 2 7 7 C 1.35885 * 117.00454 * 180.02562 * 6 5 4 8 8 C 1.38935 * 119.95707 * 0.02562 * 7 6 5 9 9 C 1.37959 * 120.07157 * 179.70431 * 8 7 6 10 10 C 1.39080 * 119.99507 * 0.54765 * 9 8 7 11 11 N 1.39545 * 120.03972 * 179.72198 * 10 9 8 12 12 C 1.34768 * 120.00043 * 335.14864 * 11 10 9 13 13 O 1.21800 * 120.00322 * 354.46907 * 12 11 10 14 14 C 1.41712 * 120.00231 * 174.47162 * 12 11 10 15 15 H 1.08000 * 119.99491 * 0.02562 * 14 12 11 16 16 C 1.40147 * 120.00092 * 179.72153 * 14 12 11 17 17 N 1.30622 * 119.99963 * 0.27297 * 16 14 12 18 18 Si 1.86801 * 119.99729 * 180.27599 * 16 14 12 19 19 H 1.48501 * 109.47082 * 60.00153 * 18 16 14 20 20 H 1.48500 * 109.46929 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47083 * 299.99944 * 18 16 14 22 22 C 1.39366 * 119.91833 * 359.44981 * 10 9 8 23 23 F 1.35093 * 120.03884 * 180.29480 * 22 10 9 24 24 C 1.38158 * 119.92118 * 0.27992 * 22 10 9 25 25 H 1.09004 * 109.46894 * 299.99875 * 1 2 3 26 26 H 1.09000 * 109.47128 * 59.99613 * 1 2 3 27 27 H 1.08993 * 109.46960 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47205 * 240.00408 * 2 1 3 29 29 H 1.09002 * 109.46899 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46995 * 300.00056 * 3 2 1 31 31 H 1.09004 * 109.47210 * 60.00318 * 3 2 1 32 32 H 1.08997 * 109.47177 * 305.00169 * 4 2 1 33 33 H 1.08996 * 109.46866 * 184.99935 * 4 2 1 34 34 H 1.09003 * 109.47613 * 59.99927 * 5 4 2 35 35 H 1.08996 * 109.47299 * 299.99577 * 5 4 2 36 36 H 1.07993 * 119.95926 * 359.97438 * 8 7 6 37 37 H 1.08009 * 119.99813 * 180.27308 * 9 8 7 38 38 H 0.97001 * 119.99721 * 155.14396 * 11 10 9 39 39 H 0.97001 * 119.99855 * 179.97438 * 17 16 14 40 40 H 1.07997 * 119.99473 * 179.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 8 2.1111 -2.8690 2.3550 7 6 1.8348 -4.1955 2.4575 8 6 1.1195 -4.8349 1.4526 9 6 0.8429 -6.1828 1.5513 10 6 1.2703 -6.9007 2.6632 11 7 0.9860 -8.2629 2.7669 12 6 -0.0725 -8.7819 2.1139 13 8 -0.8389 -8.0481 1.5159 14 6 -0.2940 -10.1816 2.1230 15 1 0.3852 -10.8323 2.6536 16 6 -1.3981 -10.7208 1.4489 17 7 -2.2200 -9.9336 0.8076 18 14 -1.6943 -12.5650 1.4674 19 1 -1.8704 -13.0240 2.8687 20 1 -2.9179 -12.8777 0.6861 21 1 -0.5299 -13.2595 0.8617 22 6 1.9878 -6.2591 3.6711 23 9 2.4093 -6.9553 4.7494 24 6 2.2678 -4.9102 3.5661 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1263 -0.6443 1.2951 34 1 2.0699 -2.6550 0.3002 35 1 0.5490 -2.2724 1.1421 36 1 0.7836 -4.2770 0.5911 37 1 0.2906 -6.6796 0.7673 38 1 1.5504 -8.8363 3.3088 39 1 -2.9839 -10.3068 0.3407 40 1 2.8234 -4.4118 4.3466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594417441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:40 Heat of formation + Delta-G solvation = -133.097107 kcal Electronic energy + Delta-G solvation = -22972.444419 eV Core-core repulsion = 19279.600578 eV Total energy + Delta-G solvation = -3692.843841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90552 -41.25328 -40.11734 -38.19881 -37.09917 -35.16748 -34.44528 -31.90889 -30.85258 -29.87585 -28.09168 -27.97102 -25.02154 -24.29876 -22.84785 -21.79460 -20.91837 -19.73940 -19.32270 -18.00597 -17.83990 -17.23993 -17.19151 -16.89644 -16.58999 -15.94868 -15.84589 -15.52953 -15.14726 -14.85396 -14.76961 -14.54324 -14.21713 -13.76890 -13.59429 -13.45956 -13.15489 -13.07853 -12.87943 -12.78295 -12.68351 -12.63536 -12.24034 -12.06492 -11.86272 -11.75026 -11.50545 -11.45040 -11.01119 -10.62567 -10.00909 -9.74575 -8.49407 -8.41502 -7.05122 0.12402 0.35351 1.39372 1.41197 1.54368 2.08510 2.19499 2.29213 2.65600 2.83081 3.31199 3.58993 3.76685 3.88809 3.92433 3.95770 4.01339 4.23198 4.26908 4.38882 4.43536 4.51880 4.71372 4.77438 4.82379 4.92636 5.00206 5.02282 5.07982 5.12001 5.18172 5.29367 5.30783 5.36733 5.44906 5.49139 5.55723 5.83697 6.06743 6.18945 6.43810 6.70147 7.28529 8.31486 8.51034 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021989 B = 0.003083 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.083034 B = 9079.003845 C =10223.015648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.107 4.107 5 C 0.048 3.952 6 O -0.318 6.318 7 C 0.118 3.882 8 C -0.182 4.182 9 C -0.097 4.097 10 C 0.103 3.897 11 N -0.691 5.691 12 C 0.530 3.470 13 O -0.607 6.607 14 C -0.564 4.564 15 H 0.089 0.911 16 C 0.034 3.966 17 N -0.796 5.796 18 Si 1.001 2.999 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.253 1.253 22 C 0.069 3.931 23 F -0.138 7.138 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.404 0.596 39 H 0.281 0.719 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 15.740 -0.566 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.026 4.026 6 O -0.232 6.232 7 C 0.072 3.928 8 C -0.201 4.201 9 C -0.119 4.119 10 C 0.004 3.996 11 N -0.334 5.334 12 C 0.340 3.660 13 O -0.495 6.495 14 C -0.599 4.599 15 H 0.107 0.893 16 C -0.185 4.185 17 N -0.424 5.424 18 Si 0.820 3.180 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.177 1.177 22 C 0.046 3.954 23 F -0.117 7.117 24 C -0.177 4.177 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.712 16.304 -0.949 18.061 hybrid contribution -0.167 -1.367 0.266 1.403 sum 7.544 14.936 -0.682 16.748 Atomic orbital electron populations 1.21974 0.95170 1.01812 1.02402 1.21045 0.95961 0.96942 0.97077 1.21807 1.01299 0.94720 1.02331 1.21594 1.02335 0.90954 0.99542 1.23170 0.99542 0.93657 0.86261 1.85971 1.74806 1.17846 1.44591 1.18436 0.96504 0.83736 0.94140 1.21331 1.03275 0.94577 1.00935 1.21180 0.99317 0.94465 0.96895 1.18207 1.00204 0.86668 0.94511 1.43659 1.31432 1.05639 1.52690 1.17364 0.79165 0.90119 0.79329 1.90556 1.47920 1.62082 1.48905 1.20542 1.12599 0.91740 1.34990 0.89311 1.26998 0.93709 1.05935 0.91864 1.70126 1.10554 1.39373 1.22336 0.85007 0.78761 0.74433 0.79791 1.17885 1.19450 1.17719 1.17038 1.03994 0.90023 0.84316 1.91425 1.88543 1.79076 1.52608 1.20078 1.06691 0.90816 1.00161 0.92414 0.91793 0.93124 0.90582 0.92146 0.91842 0.92432 0.90887 0.90419 0.91329 0.91671 0.83245 0.85288 0.76126 0.90872 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.95 71.98 0.64 -1.56 16 2 C -0.09 -1.22 2.92 -10.79 -0.03 -1.25 16 3 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 4 C -0.11 -1.71 5.05 30.59 0.15 -1.55 16 5 C 0.05 1.01 4.49 71.98 0.32 1.33 16 6 O -0.32 -8.63 10.13 -92.26 -0.93 -9.56 16 7 C 0.12 3.78 6.69 22.58 0.15 3.93 16 8 C -0.18 -6.34 9.03 22.37 0.20 -6.14 16 9 C -0.10 -4.29 8.71 22.41 0.20 -4.09 16 10 C 0.10 4.59 6.44 38.39 0.25 4.84 16 11 N -0.69 -33.30 5.28 -311.16 -1.64 -34.95 16 12 C 0.53 30.49 7.37 85.10 0.63 31.12 16 13 O -0.61 -38.88 12.03 -4.67 -0.06 -38.94 16 14 C -0.56 -31.21 9.31 23.59 0.22 -30.99 16 15 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 16 C 0.03 1.81 5.50 85.34 0.47 2.28 16 17 N -0.80 -46.42 11.73 21.85 0.26 -46.16 16 18 Si 1.00 39.16 29.56 68.60 2.03 41.19 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 22 C 0.07 2.62 7.31 22.52 0.16 2.78 16 23 F -0.14 -5.00 16.81 44.97 0.76 -4.24 16 24 C -0.16 -5.11 9.96 22.39 0.22 -4.89 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.34 7.65 -2.39 -0.02 1.33 16 35 H 0.07 1.37 6.08 -2.39 -0.01 1.36 16 36 H 0.15 4.38 6.29 -2.91 -0.02 4.36 16 37 H 0.13 6.66 5.78 -2.91 -0.02 6.65 16 38 H 0.40 17.23 8.40 -92.71 -0.78 16.45 16 39 H 0.28 14.73 8.29 -92.71 -0.77 13.97 16 40 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -69.29 337.88 4.94 -64.35 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.29 Total: 33.44 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.25 Total: -5.13 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.39 Total: -81.11 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.99 Total: -48.50 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.76 Total: -4.24 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -69.29 4.94 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594417441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.748 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds