Wall clock time and date at job start Tue Mar 31 2020 08:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 H 1.08988 * 109.47429 * 181.77830 * 3 2 1 5 5 C 1.50702 * 109.47055 * 61.77834 * 3 2 1 6 6 H 1.08004 * 120.00336 * 244.98000 * 5 3 2 7 7 C 1.37882 * 119.99674 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00018 * 9.71169 * 7 5 3 9 9 Si 1.86804 * 119.99766 * 189.70989 * 7 5 3 10 10 H 1.48494 * 109.47291 * 270.00321 * 9 7 5 11 11 H 1.48502 * 109.47147 * 30.00385 * 9 7 5 12 12 H 1.48500 * 109.46898 * 149.99865 * 9 7 5 13 13 N 1.46906 * 109.47337 * 301.78283 * 3 2 1 14 14 C 1.46901 * 110.99613 * 274.08049 * 13 3 2 15 15 C 1.53001 * 109.46884 * 184.34783 * 14 13 3 16 16 S 1.81403 * 109.47046 * 179.97438 * 15 14 13 17 17 C 1.76192 * 103.00014 * 180.02562 * 16 15 14 18 18 C 1.39034 * 120.05463 * 359.72330 * 17 16 15 19 19 C 1.38095 * 120.02978 * 179.69867 * 18 17 16 20 20 C 1.38227 * 120.13450 * 0.60590 * 19 18 17 21 21 C 1.38783 * 120.10492 * 359.67239 * 20 19 18 22 22 O 1.35902 * 120.01847 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99694 * 0.02562 * 22 21 20 24 24 C 1.38593 * 119.97142 * 0.02613 * 21 20 19 25 25 H 1.08996 * 109.47119 * 64.50888 * 1 2 3 26 26 H 1.08993 * 109.47211 * 184.51361 * 1 2 3 27 27 H 1.08996 * 109.46458 * 304.51538 * 1 2 3 28 28 H 1.08999 * 109.46793 * 240.00164 * 2 1 3 29 29 H 1.08994 * 109.47276 * 120.00449 * 2 1 3 30 30 H 0.96993 * 120.00036 * 357.02048 * 8 7 5 31 31 H 1.00900 * 111.00292 * 150.12824 * 13 3 2 32 32 H 1.08997 * 109.47187 * 304.35257 * 14 13 3 33 33 H 1.09005 * 109.47207 * 64.34915 * 14 13 3 34 34 H 1.08997 * 109.47595 * 300.00223 * 15 14 13 35 35 H 1.09001 * 109.46611 * 60.00190 * 15 14 13 36 36 H 1.08008 * 119.98317 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.92723 * 180.30217 * 19 18 17 38 38 H 1.08003 * 119.94874 * 179.70046 * 20 19 18 39 39 H 1.08994 * 109.47337 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47631 * 300.00346 * 23 22 21 41 41 H 1.09007 * 109.46701 * 60.00303 * 23 22 21 42 42 H 1.07996 * 120.07139 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0319 5 6 1.5741 2.1400 1.2519 6 1 0.8862 2.9698 1.1836 7 6 2.0261 1.7189 2.4846 8 7 3.0029 0.8418 2.5623 9 14 1.2508 2.3942 4.0443 10 1 1.9800 3.6153 4.4709 11 1 -0.1715 2.7326 3.7836 12 1 1.3273 1.3713 5.1180 13 7 1.5156 2.1474 -1.1773 14 6 2.3772 1.9312 -2.3474 15 6 1.8610 2.7651 -3.5217 16 16 2.9254 2.4988 -4.9664 17 6 2.1880 3.5227 -6.1961 18 6 1.0523 4.2656 -5.8942 19 6 0.4783 5.0727 -6.8565 20 6 1.0233 5.1347 -8.1253 21 6 2.1536 4.3910 -8.4345 22 8 2.6883 4.4537 -9.6824 23 6 2.0357 5.3060 -10.6257 24 6 2.7368 3.5844 -7.4702 25 1 -0.3633 0.4423 -0.9276 26 1 -0.3633 -1.0244 0.0809 27 1 -0.3632 0.5823 0.8468 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3762 0.4587 1.7532 31 1 1.4025 3.1321 -0.9886 32 1 3.3970 2.2325 -2.1082 33 1 2.3644 0.8754 -2.6180 34 1 0.8412 2.4638 -3.7609 35 1 1.8740 3.8209 -3.2510 36 1 0.6213 4.2149 -4.9051 37 1 -0.4011 5.6529 -6.6187 38 1 0.5692 5.7632 -8.8771 39 1 2.5623 5.2633 -11.5790 40 1 1.0067 4.9741 -10.7643 41 1 2.0400 6.3305 -10.2534 42 1 3.6166 3.0053 -7.7090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595528259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:00 Heat of formation + Delta-G solvation = -25.051109 kcal Electronic energy + Delta-G solvation = -20494.526536 eV Core-core repulsion = 17372.581097 eV Total energy + Delta-G solvation = -3121.945439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28661 -37.60025 -36.82228 -33.61239 -31.39737 -31.23209 -30.52037 -29.02034 -27.60440 -25.40842 -23.49176 -23.28933 -22.43705 -21.78025 -19.38106 -18.77587 -17.10020 -16.60697 -16.26409 -16.06080 -16.02002 -15.28410 -14.91808 -14.17973 -13.92516 -13.89557 -13.70856 -13.52716 -13.28965 -13.06754 -12.60512 -12.47515 -12.00093 -11.77708 -11.58177 -11.44175 -11.33575 -11.21364 -11.05536 -10.80871 -10.23837 -10.14680 -10.11616 -9.96708 -9.86805 -9.75437 -8.62767 -8.57461 -8.27784 -7.55181 -7.46181 -6.40257 -4.10806 0.95473 1.18167 1.37890 2.37382 3.00208 3.40274 3.44489 3.45117 3.60163 4.48074 4.49966 4.73062 4.75014 4.78195 4.94436 4.95627 5.00671 5.08509 5.13991 5.27222 5.32479 5.41549 5.61151 5.63644 5.96772 6.05150 6.06496 6.14819 6.16992 6.29094 6.33509 6.39337 6.57679 6.93071 7.01039 7.08568 7.19755 7.43533 7.49874 7.80012 8.00870 8.43039 8.51440 8.82206 9.59984 10.97309 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.002482 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.402251 B =11279.987314 C =11507.342041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.205 3.795 4 H -0.005 1.005 5 C -0.597 4.597 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.075 3.925 15 C -0.102 4.102 16 S -0.103 6.103 17 C -0.041 4.041 18 C -0.170 4.170 19 C -0.060 4.060 20 C -0.219 4.219 21 C 0.143 3.857 22 O -0.317 6.317 23 C 0.028 3.972 24 C -0.138 4.138 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.271 0.729 31 H 0.335 0.665 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 8.198 -22.565 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.012 0.988 5 C -0.636 4.636 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.544 5.544 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.306 5.306 14 C -0.056 4.056 15 C -0.250 4.250 16 S 0.142 5.858 17 C -0.154 4.154 18 C -0.194 4.194 19 C -0.080 4.080 20 C -0.240 4.240 21 C 0.096 3.904 22 O -0.230 6.230 23 C -0.067 4.067 24 C -0.162 4.162 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.786 6.751 -21.083 22.312 hybrid contribution -0.660 1.635 -1.532 2.336 sum -3.446 8.385 -22.615 24.364 Atomic orbital electron populations 1.21428 0.96459 0.97936 1.01919 1.21505 0.96326 0.98204 0.98520 1.19272 0.92382 0.91350 0.87341 0.98777 1.21942 1.31340 1.18647 0.91662 0.92771 1.25725 0.94756 0.96021 1.01641 1.70768 1.21978 1.28767 1.32882 0.83553 0.75554 0.75916 0.75280 1.21620 1.21351 1.20973 1.60685 1.49083 1.16116 1.04742 1.21615 0.94989 0.99129 0.89898 1.23791 1.01777 1.04294 0.95164 1.85578 1.39837 1.55388 1.05020 1.21585 0.97720 0.99392 0.96723 1.21193 0.97105 1.00274 1.00824 1.20841 0.98522 0.96498 0.92094 1.21209 0.98899 1.05076 0.98853 1.18795 0.92312 0.94864 0.84465 1.86073 1.53613 1.64283 1.19075 1.23064 0.98279 0.93613 0.91783 1.19886 1.02812 1.03001 0.90544 0.93450 0.96279 0.92114 0.96200 0.92204 0.91754 0.84784 0.95108 0.90859 0.88555 0.89563 0.85287 0.85403 0.85400 0.88199 0.92586 0.92583 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.52 37.16 0.35 -2.23 16 2 C -0.11 -2.49 5.49 -26.73 -0.15 -2.64 16 3 C 0.20 4.95 1.93 -68.86 -0.13 4.82 16 4 H -0.01 -0.14 7.08 -51.94 -0.37 -0.51 16 5 C -0.60 -15.88 7.24 -34.44 -0.25 -16.13 16 6 H 0.05 1.44 7.67 -52.48 -0.40 1.04 16 7 C 0.02 0.65 5.18 -17.82 -0.09 0.56 16 8 N -0.91 -26.58 13.04 55.43 0.72 -25.85 16 9 Si 1.07 24.62 29.92 -169.99 -5.09 19.53 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.56 5.58 -107.95 -0.60 -14.16 16 14 C 0.07 1.29 5.54 -3.82 -0.02 1.27 16 15 C -0.10 -1.42 4.55 37.16 0.17 -1.25 16 16 S -0.10 -1.41 21.92 -107.50 -2.36 -3.77 16 17 C -0.04 -0.52 6.11 -39.05 -0.24 -0.76 16 18 C -0.17 -1.99 9.36 -39.34 -0.37 -2.36 16 19 C -0.06 -0.60 10.03 -39.64 -0.40 -0.99 16 20 C -0.22 -2.12 9.04 -39.38 -0.36 -2.48 16 21 C 0.14 1.60 6.68 -39.25 -0.26 1.34 16 22 O -0.32 -3.25 10.49 -19.43 -0.20 -3.45 16 23 C 0.03 0.16 9.81 101.05 0.99 1.15 16 24 C -0.14 -1.70 9.73 -39.22 -0.38 -2.08 16 25 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 28 H 0.02 0.42 7.64 -51.93 -0.40 0.03 16 29 H 0.06 1.53 6.37 -51.93 -0.33 1.20 16 30 H 0.27 7.93 6.03 -40.82 -0.25 7.69 16 31 H 0.33 6.61 8.18 -39.29 -0.32 6.29 16 32 H 0.03 0.56 7.95 -51.93 -0.41 0.15 16 33 H 0.07 1.30 7.64 -51.93 -0.40 0.91 16 34 H 0.10 1.31 7.73 -51.93 -0.40 0.91 16 35 H 0.09 1.14 7.76 -51.92 -0.40 0.74 16 36 H 0.13 1.43 5.87 -52.48 -0.31 1.12 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 0.90 6.29 -52.48 -0.33 0.57 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 41 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -29.55 351.24 -9.73 -39.28 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.37 Total: 4.91 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.13 Total: -21.79 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.12 Total: -40.01 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.20 Total: -3.45 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.53 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.36 Total: -3.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.55 -9.73 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595528259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.232 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds