Wall clock time and date at job start Tue Mar 31 2020 08:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 H 1.08988 * 109.47429 * 181.77830 * 3 2 1 5 5 C 1.50702 * 109.47055 * 61.77834 * 3 2 1 6 6 H 1.08004 * 120.00336 * 244.98000 * 5 3 2 7 7 C 1.37882 * 119.99674 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00018 * 9.71169 * 7 5 3 9 9 Si 1.86804 * 119.99766 * 189.70989 * 7 5 3 10 10 H 1.48494 * 109.47291 * 270.00321 * 9 7 5 11 11 H 1.48502 * 109.47147 * 30.00385 * 9 7 5 12 12 H 1.48500 * 109.46898 * 149.99865 * 9 7 5 13 13 N 1.46906 * 109.47337 * 301.78283 * 3 2 1 14 14 C 1.46901 * 110.99613 * 274.08049 * 13 3 2 15 15 C 1.53001 * 109.46884 * 184.34783 * 14 13 3 16 16 S 1.81403 * 109.47046 * 179.97438 * 15 14 13 17 17 C 1.76192 * 103.00014 * 180.02562 * 16 15 14 18 18 C 1.39034 * 120.05463 * 359.72330 * 17 16 15 19 19 C 1.38095 * 120.02978 * 179.69867 * 18 17 16 20 20 C 1.38227 * 120.13450 * 0.60590 * 19 18 17 21 21 C 1.38783 * 120.10492 * 359.67239 * 20 19 18 22 22 O 1.35902 * 120.01847 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99694 * 0.02562 * 22 21 20 24 24 C 1.38593 * 119.97142 * 0.02613 * 21 20 19 25 25 H 1.08996 * 109.47119 * 64.50888 * 1 2 3 26 26 H 1.08993 * 109.47211 * 184.51361 * 1 2 3 27 27 H 1.08996 * 109.46458 * 304.51538 * 1 2 3 28 28 H 1.08999 * 109.46793 * 240.00164 * 2 1 3 29 29 H 1.08994 * 109.47276 * 120.00449 * 2 1 3 30 30 H 0.96993 * 120.00036 * 357.02048 * 8 7 5 31 31 H 1.00900 * 111.00292 * 150.12824 * 13 3 2 32 32 H 1.08997 * 109.47187 * 304.35257 * 14 13 3 33 33 H 1.09005 * 109.47207 * 64.34915 * 14 13 3 34 34 H 1.08997 * 109.47595 * 300.00223 * 15 14 13 35 35 H 1.09001 * 109.46611 * 60.00190 * 15 14 13 36 36 H 1.08008 * 119.98317 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.92723 * 180.30217 * 19 18 17 38 38 H 1.08003 * 119.94874 * 179.70046 * 20 19 18 39 39 H 1.08994 * 109.47337 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47631 * 300.00346 * 23 22 21 41 41 H 1.09007 * 109.46701 * 60.00303 * 23 22 21 42 42 H 1.07996 * 120.07139 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0319 5 6 1.5741 2.1400 1.2519 6 1 0.8862 2.9698 1.1836 7 6 2.0261 1.7189 2.4846 8 7 3.0029 0.8418 2.5623 9 14 1.2508 2.3942 4.0443 10 1 1.9800 3.6153 4.4709 11 1 -0.1715 2.7326 3.7836 12 1 1.3273 1.3713 5.1180 13 7 1.5156 2.1474 -1.1773 14 6 2.3772 1.9312 -2.3474 15 6 1.8610 2.7651 -3.5217 16 16 2.9254 2.4988 -4.9664 17 6 2.1880 3.5227 -6.1961 18 6 1.0523 4.2656 -5.8942 19 6 0.4783 5.0727 -6.8565 20 6 1.0233 5.1347 -8.1253 21 6 2.1536 4.3910 -8.4345 22 8 2.6883 4.4537 -9.6824 23 6 2.0357 5.3060 -10.6257 24 6 2.7368 3.5844 -7.4702 25 1 -0.3633 0.4423 -0.9276 26 1 -0.3633 -1.0244 0.0809 27 1 -0.3632 0.5823 0.8468 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3762 0.4587 1.7532 31 1 1.4025 3.1321 -0.9886 32 1 3.3970 2.2325 -2.1082 33 1 2.3644 0.8754 -2.6180 34 1 0.8412 2.4638 -3.7609 35 1 1.8740 3.8209 -3.2510 36 1 0.6213 4.2149 -4.9051 37 1 -0.4011 5.6529 -6.6187 38 1 0.5692 5.7632 -8.8771 39 1 2.5623 5.2633 -11.5790 40 1 1.0067 4.9741 -10.7643 41 1 2.0400 6.3305 -10.2534 42 1 3.6166 3.0053 -7.7090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595528259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:00 Heat of formation + Delta-G solvation = -41.628555 kcal Electronic energy + Delta-G solvation = -20495.245388 eV Core-core repulsion = 17372.581097 eV Total energy + Delta-G solvation = -3122.664291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04174 -38.60722 -38.35829 -35.35473 -33.10702 -32.19727 -31.47052 -30.47116 -28.16146 -27.29324 -25.39244 -24.35383 -23.25679 -23.02275 -21.26517 -19.58279 -18.99315 -17.47415 -17.09982 -16.99345 -16.77095 -16.66801 -16.36045 -15.71887 -15.41053 -15.21534 -14.92742 -14.82826 -14.42576 -14.27144 -13.95308 -13.60606 -13.22360 -13.18175 -12.90444 -12.72864 -12.62330 -12.54448 -12.18253 -12.06678 -11.93771 -11.92234 -11.79933 -11.59509 -11.23812 -10.72508 -10.65512 -10.34388 -9.39243 -9.24722 -8.58591 -8.52354 -6.29224 0.10874 0.32599 0.34887 1.32745 1.55016 1.63335 1.80445 2.35568 2.57872 2.61671 3.22017 3.48953 3.76152 3.78002 3.94156 4.04543 4.09778 4.20886 4.34569 4.40215 4.42451 4.43595 4.49341 4.54504 4.66654 4.72164 4.74587 4.78417 4.82646 5.03813 5.13187 5.20267 5.24093 5.36267 5.36862 5.51759 5.58143 5.69265 5.86570 6.06204 6.37655 6.45177 6.56099 6.76772 7.50102 8.79086 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.002482 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.402251 B =11279.987314 C =11507.342041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C 0.208 3.792 4 H -0.040 1.040 5 C -0.599 4.599 6 H 0.054 0.946 7 C -0.026 4.026 8 N -0.935 5.935 9 Si 1.113 2.887 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.287 1.287 13 N -0.666 5.666 14 C 0.080 3.920 15 C -0.086 4.086 16 S -0.125 6.125 17 C -0.053 4.053 18 C -0.182 4.182 19 C -0.058 4.058 20 C -0.212 4.212 21 C 0.137 3.863 22 O -0.336 6.336 23 C 0.017 3.983 24 C -0.157 4.157 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.258 0.742 31 H 0.338 0.662 32 H 0.018 0.982 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 9.876 -24.111 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C 0.098 3.902 4 H -0.023 1.023 5 C -0.637 4.637 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.573 5.573 9 Si 0.935 3.065 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.213 1.213 13 N -0.298 5.298 14 C -0.051 4.051 15 C -0.234 4.234 16 S 0.119 5.881 17 C -0.166 4.166 18 C -0.206 4.206 19 C -0.078 4.078 20 C -0.233 4.233 21 C 0.089 3.911 22 O -0.250 6.250 23 C -0.077 4.077 24 C -0.182 4.182 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.155 0.845 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.855 8.449 -22.674 24.679 hybrid contribution -0.004 1.169 -1.258 1.718 sum -4.859 9.618 -23.932 26.246 Atomic orbital electron populations 1.21317 0.94670 0.99078 1.01615 1.21409 0.97776 0.97288 0.97720 1.19103 0.90357 0.92329 0.88362 1.02261 1.22226 1.30509 1.18346 0.92622 0.92759 1.27058 0.94536 0.95795 1.05094 1.70883 1.23675 1.30497 1.32212 0.82981 0.75860 0.75634 0.71978 1.20344 1.19382 1.21336 1.60591 1.49146 1.15984 1.04055 1.21530 0.94006 0.99515 0.90008 1.23538 1.01893 1.04035 0.93941 1.85604 1.40394 1.56545 1.05568 1.21546 0.98608 1.00097 0.96393 1.21373 0.96914 1.00650 1.01634 1.21210 0.99045 0.95834 0.91673 1.21572 0.97925 1.04357 0.99453 1.18915 0.92691 0.94704 0.84767 1.86057 1.54518 1.65297 1.19103 1.23398 0.99092 0.93607 0.91608 1.19970 1.03213 1.03959 0.91070 0.92239 0.94181 0.94013 0.94970 0.95015 0.93156 0.84469 0.96423 0.91407 0.87734 0.88613 0.84896 0.82487 0.82379 0.86330 0.91346 0.91381 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.52 71.98 0.69 -3.90 16 2 C -0.10 -4.85 5.49 30.60 0.17 -4.68 16 3 C 0.21 10.20 1.93 44.17 0.09 10.29 16 4 H -0.04 -2.22 7.08 -2.39 -0.02 -2.24 16 5 C -0.60 -32.00 7.24 25.60 0.19 -31.81 16 6 H 0.05 2.85 7.67 -2.91 -0.02 2.83 16 7 C -0.03 -1.43 5.18 84.66 0.44 -0.99 16 8 N -0.94 -56.08 13.04 21.45 0.28 -55.80 16 9 Si 1.11 49.27 29.92 68.60 2.05 51.32 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.67 -26.61 5.58 -495.45 -2.76 -29.38 16 14 C 0.08 2.77 5.54 86.30 0.48 3.25 16 15 C -0.09 -2.33 4.55 71.98 0.33 -2.00 16 16 S -0.13 -3.44 21.92 -56.49 -1.24 -4.67 16 17 C -0.05 -1.34 6.11 22.61 0.14 -1.20 16 18 C -0.18 -3.95 9.36 22.43 0.21 -3.74 16 19 C -0.06 -0.99 10.03 22.23 0.22 -0.77 16 20 C -0.21 -3.49 9.04 22.40 0.20 -3.29 16 21 C 0.14 2.86 6.68 22.49 0.15 3.02 16 22 O -0.34 -6.37 10.49 -92.44 -0.97 -7.34 16 23 C 0.02 0.15 9.81 113.37 1.11 1.27 16 24 C -0.16 -3.86 9.73 22.50 0.22 -3.65 16 25 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.89 7.12 -2.39 -0.02 1.87 16 28 H 0.03 1.39 7.64 -2.39 -0.02 1.38 16 29 H 0.03 1.65 6.37 -2.39 -0.02 1.64 16 30 H 0.26 15.74 6.03 -92.71 -0.56 15.18 16 31 H 0.34 13.14 8.18 -89.69 -0.73 12.41 16 32 H 0.02 0.66 7.95 -2.39 -0.02 0.64 16 33 H 0.07 2.42 7.64 -2.38 -0.02 2.40 16 34 H 0.10 2.69 7.73 -2.39 -0.02 2.67 16 35 H 0.10 2.42 7.76 -2.39 -0.02 2.40 16 36 H 0.13 2.70 5.87 -2.91 -0.02 2.68 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.16 1.57 6.29 -2.91 -0.02 1.55 16 39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 41 H 0.07 0.46 7.66 -2.38 -0.02 0.44 16 42 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -64.47 351.24 2.47 -62.00 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.49 Total: 22.07 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 4.62 Total: -38.21 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.49 Total: -85.17 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.97 Total: -7.34 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.24 Total: -4.67 kcal Total: -64.47 2.47 -62.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595528259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.373 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds